Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon

BioNLP 2009 - Biomedical Natural Language Processing Workshop, BioNLP 2009 - held in conjunction with 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, NAACL-HLT 2009 - Proceedings

Volumn , Issue , 2009, Pages 63-70

  Xu, Rong ^a   Morgan, Alex ^a   Das, Amar K ^a   Garber, Alan ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ITERATIVE METHODS; MEDICAL INFORMATION SYSTEMS; SEARCH ENGINES;

AUTOMATED DISCOVERY; BACKGROUND KNOWLEDGE; BIOMEDICAL INFORMATION RETRIEVAL; BIOMEDICAL RESEARCH; F MEASURE; LEARNING TECHNIQUES; MEDICAL TREATMENT; PATTERN LEARNING; RANDOMIZED CLINICAL TRIALS; UNSUPERVISED PATTERNS;

ABSTRACTING;

EID: 83455188192     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (23)

1. E. Agichtein, L Gravano. 2000. Snowball: Extracting relations from large plaintext collections, In Proc of the 5th ACM conference on Digital libraries . A.R. Aronson 2001. Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program. Proc AMIA Symp:17-21.
2. B. Baldwin 2001. Text and knowledge mining for coreference resolution. Second meeting of the North American Chapter of the Association for Computational Linguistics on Language technologies:1-8.
3. C. Blaschke, A. Valencia. 2002. The frame-based module of the SUISEKI information extraction system, Intelligent Systems, IEEE, 17; 2:14 - 20.
4. O. Bodenreider, T.C. Rindflesch, A. Burgun, 2002. Unsupervised, corpus-based method for extending a biomedical terminology. Proc of the ACL-02 workshop on Natural language processing in the biomedical domain: 53-60.
5. S. Brin 1998. Extracting patterns and relations from the world wide web. WebDB Workshop at 6th International Conference on Extending Database Technology
6. E. Buyko, S. Piao, Y. Tsuruoka, K. Tomanek , J.D. Kim, J. McNaught, U. Hahn, J. Su, and S. Ananiadou. 2007, Bootstrep annotation scheme: Encoding information for text mining, Proc of the 4th Corpus Linguistics Conference, Birmingham, July 27-30.
7. J. G. Caprosaso, W.A. Baumgartner, D.A. Randolph, K.B. Cohen, L. Hunter 2007. Rapid pattern development for concept recognition systems: Application to point mutations., Journal of Bioinformatics and Computational Biology, Vol. 5, No. 6, 12331259.
8. A. Cohen 2005. Unsupervised gene/protein named entity normalization using automatically extracted dictionaries. Proc of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: 17-24.
9. M. Collins, Y. Singer 1999. Unsupervised Models for Named Entity Classification. EMNLP J.R. Curran, T Murphy, B Scholz 2007. Minimizing Semantic Drift With Mutual Exclusion Bootstrapping, Proc of the 10th Conference of PACL:172-180.
10. D. Day, J. Aberdeen, L. Hirschman, R. Kozierok, P. Robinson, M. Vilain 1997, Mixed-initiative development of language processing systems. Proc of the 5th ACL Conference on Applied Natural Language Processing H. Fang, K. Murphy, Y. Jin, J.S. Kim, P.S. White 2006.
11. Human Gene Name Normalization using Text Matching with Automatically Extracted Synonym Dictionaries. Proc of the BioNLP Workshop on Linking Natural Language Processing and Biology at HLT-NAACL 06: 4148.
12. C. Friedman, P. Kra, H. Yu, M. Krauthammer, A. Rzhetsky. 2001. GENIES: A natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics, ; 17 Suppl 1:S74-82.
13. M.A. Hearst 1992. Automatic acquisition of hyponyms from large text corpora, Proc of the 14th conference on computational linguistics.
14. D. Klein D, CD. Manning 2003. Accurate Unlexicalized Parsing, Proc of the 41st Meeting of the Association for Computational Linguistics, 2003; 423-30.
15. M. Krauthammer G. Nenadic 2004. Term identification in the biomedical literature., J Biomed Inform, Dec; 37(6):512-26.
16. S. Mukherjea, L.V. Subramaniam, G. Chanda, S. Sankararaman, R. Kothari, V.S. Batra, D.N. Bhardwaj, B.Srivastava 2004. Enhancing a biomedical information extraction system with dictionary mining and context disambiguation, IBM Journal of Research and Development, 48(5-6): 693-702
17. W. Pratt, M. Yetisgen-Yildiz 2003 A Study of Biomedical Concept Identification: MetaMap vs. People, Proc AMIA Symp, 529-533.
18. R. Snow, D. Jurafsky, A. Ng 2005. Learning syntactic patterns for automatic hypernym discovery, Proc of the 17th Conference on Advances in Neural Information Processing Systems MIT Press.
19. M. Thelen, E. Riloff 2002. A Bootstrapping Method for Learning Semantic Lexicons Using Extraction Pattern Contexts, Proc of EMNLP.
20. K. Tomanek, J Wermter, U Hahn. 2007. An Approach to Text Corpus Construction which Cuts Annotation Costs and Maintains Reusability of Annotated Data, Proc of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning:486-495.
21. Y. Tsuruoka, J. Tsujii 2003, Boosting Precision and Recall of Dictionary-Based Protein Name Recognition, Proc of the ACL 2003 Workshop on NLP in Biomedicine:41-8.
22. Y. Tsuruoka, J. Tsujii 2004, Improving the performance of dictionary-based approaches in protein name recognition, J of Biomed Inf 37, 6; December: 461-470.
23. R. Xu, K. Supekar, A. Morgan, A.Das, A. Garber 2008. Unsupervised Method for Automatic Construction of a Disease Dictionary from a Large Free Text Collection, Proc AMIA Symp.