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Volumn 77, Issue 21, 2011, Pages 7469-7478

Niche partitioning of marine group I Crenarchaeota in the euphotic and upper mesopelagic zones of the East China Sea

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA GENE; BIOTIN CARBOXYLASE; CARBON CYCLING; CLONE LIBRARY; COMMUNITY STRUCTURES; CONTROLLING MECHANISM; COPY NUMBER; CRENARCHAEOTA; DENATURING GRADIENT GEL; EAST CHINA SEA; ECOLOGICAL FUNCTIONS; ELEMENT CYCLING; EUPHOTIC ZONE; LIGHT GRADIENTS; MARINE ENVIRONMENT; MESOPELAGIC; MESOPELAGIC ZONE; MICROBIAL POPULATIONS; MONOOXYGENASES; QUANTITATIVE PCR; RELATIVE ABUNDANCE; SIMULATION ANALYSIS; SPATIAL DYNAMICS; UPPER OCEAN; WATER COLUMNS;

EID: 83155185462     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00294-11     Document Type: Article
Times cited : (50)

References (66)
  • 1
    • 57649114800 scopus 로고    scopus 로고
    • Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
    • Agogué, H., M. Brink, J. Dinasquet, and G. J. Herndl. 2008. Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456:788-791.
    • (2008) Nature , vol.456 , pp. 788-791
    • Agogué, H.1    Brink, M.2    Dinasquet, J.3    Herndl, G.J.4
  • 2
    • 78651277082 scopus 로고    scopus 로고
    • Water mass specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing
    • Agogué, H., D. Lamy, P. R. Neal, M. L. Sogin, and G. J. Herndl. 2011. Water mass specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol. Ecol. 20:258-274.
    • (2011) Mol. Ecol. , vol.20 , pp. 258-274
    • Agogué, H.1    Lamy, D.2    Neal, P.R.3    Sogin, M.L.4    Herndl, G.J.5
  • 3
    • 2342565752 scopus 로고    scopus 로고
    • Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages
    • Bano, N., S. Ruffin, B. Ransom, and J. T. Hollibaugh. 2004. Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages. Appl. Environ. Microbiol. 70:781-789.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 781-789
    • Bano, N.1    Ruffin, S.2    Ransom, B.3    Hollibaugh, J.T.4
  • 4
    • 33845520639 scopus 로고    scopus 로고
    • Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari
    • Beman, J. M., and C. A. Francis. 2006. Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari, Mexico. Appl. Environ. Microbiol. 72:7767-7777.
    • (2006) Mexico. Appl. Environ. Microbiol. , vol.72 , pp. 7767-7777
    • Beman, J.M.1    Francis, C.A.2
  • 5
    • 42049122119 scopus 로고    scopus 로고
    • Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
    • Beman, J. M., B. N. Popp, and C. A. Francis. 2008. Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2:429-441.
    • (2008) ISME J , vol.2 , pp. 429-441
    • Beman, J.M.1    Popp, B.N.2    Francis, C.A.3
  • 6
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
    • Brochier-Armanet, C., B. Boussau, S. Gribaldo, and P. Forterre. 2008. Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat. Rev. Microbiol. 6:245-252.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 245-252
    • Brochier-Armanet, C.1    Boussau, B.2    Gribaldo, S.3    Forterre, P.4
  • 7
    • 60749109199 scopus 로고    scopus 로고
    • Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
    • Carlson, C. A., et al. 2009. Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. ISME J. 3:283-295.
    • (2009) ISME J , vol.3 , pp. 283-295
    • Carlson, C.A.1
  • 8
    • 0042784633 scopus 로고    scopus 로고
    • Physicalbiological sources for dense algal blooms near the Changjiang River
    • Chen, C., J. Zhu, R. C. Beardsley, and P. J. S. Franks. 2003. Physicalbiological sources for dense algal blooms near the Changjiang River. Geophys. Res. Lett. 30:22-1-22-4.
    • (2003) Geophys. Res. Lett. , vol.30 , pp. 221-224
    • Chen, C.1    Zhu, J.2    Beardsley, R.C.3    Franks, P.J.S.4
  • 9
    • 77953940648 scopus 로고    scopus 로고
    • Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean
    • Church, M. J., B. Wai, D. M. Karl, and E. F. DeLong. 2010. Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environ. Microbiol. 12:679-688.
    • (2010) Environ. Microbiol. , vol.12 , pp. 679-688
    • Church, M.J.1    Wai, B.2    Karl, D.M.3    DeLong, E.F.4
  • 11
    • 58549113144 scopus 로고    scopus 로고
    • Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranean Sea
    • De Corte, D., T. Yokokawa, M. M. Varela, H. Agogue, and G. J. Herndl. 2009. Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranean Sea. ISME J. 3:147-158.
    • (2009) ISME J , vol.3 , pp. 147-158
    • De Corte, D.1    Yokokawa, T.2    Varela, M.M.3    Agogue, H.4    Herndl, G.J.5
  • 12
    • 0026755238 scopus 로고
    • Archaea in coastal marine environment
    • DeLong, E. F. 1992. Archaea in coastal marine environment. Proc. Natl. Acad. Sci. U. S. A. 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. U. S. A. , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 13
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • DeLong, E. F., et al. 2006. Community genomics among stratified microbial assemblages in the ocean's interior. Science 311:496-503.
    • (2006) Science , vol.311 , pp. 496-503
    • DeLong, E.F.1
  • 14
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
    • Francis, C. A., K. J. Roberts, J. M. Beman, A. E. Santoro, and B. B. Oakley. 2005. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. U. S. A. 102:14683-14688.
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 15
    • 66149150877 scopus 로고    scopus 로고
    • Microbial community structure and its functional implications
    • Fuhrman, J. A. 2009. Microbial community structure and its functional implications. Nature 459:193-199.
    • (2009) Nature , vol.459 , pp. 193-199
    • Fuhrman, J.A.1
  • 16
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature 356:148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 17
    • 63849288893 scopus 로고    scopus 로고
    • Archaeal diversity and a gene for ammonia oxidation are coupled to oceanic circulation
    • Galand, P. E., et al. 2009. Archaeal diversity and a gene for ammonia oxidation are coupled to oceanic circulation. Environ. Microbiol. 11:971-980.
    • (2009) Environ. Microbiol. , vol.11 , pp. 971-980
    • Galand, P.E.1
  • 18
    • 77950027652 scopus 로고    scopus 로고
    • Hydrography shapes bacterial biogeography of the deep Arctic Ocean
    • Galand, P. E., M. Potvin, E. O. Casamayor, and C. Lovejoy. 2009. Hydrography shapes bacterial biogeography of the deep Arctic Ocean. ISME J. 4:564-576.
    • (2009) ISME J , vol.4 , pp. 564-576
    • Galand, P.E.1    Potvin, M.2    Casamayor, E.O.3    Lovejoy, C.4
  • 19
    • 0033929777 scopus 로고    scopus 로고
    • Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of group I
    • Garcia-Martinez, J., and F. Rodriguez-Valera. 2000. Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of group I. Mol. Ecol. 9:935-948.
    • (2000) Mol. Ecol. , vol.9 , pp. 935-948
    • Garcia-Martinez, J.1    Rodriguez-Valera, F.2
  • 20
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I. J. 1953. The population frequencies of species and the estimation of population parameters. Biometrika 40:237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 21
    • 33845286513 scopus 로고    scopus 로고
    • Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
    • Hallam, S. J., et al. 2006. Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc. Natl. Acad. Sci. U. S. A. 103:18296-18301.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 18296-18301
    • Hallam, S.J.1
  • 22
    • 33646260901 scopus 로고    scopus 로고
    • Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota
    • Hallam, S. J., et al. 2006. Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol. 4:e95.
    • (2006) PLoS Biol , vol.4
    • Hallam, S.J.1
  • 23
    • 44949223320 scopus 로고    scopus 로고
    • Water masses and biogeography of picoeukaryote assemblages in a cold hydrographically complex system
    • Hamilton, A. K., C. Lovejoy, P. E. Galand, and R. G. Ingram. 2008. Water masses and biogeography of picoeukaryote assemblages in a cold hydrographically complex system. Limnol. Oceanogr. 53:922-935.
    • (2008) Limnol. Oceanogr. , vol.53 , pp. 922-935
    • Hamilton, A.K.1    Lovejoy, C.2    Galand, P.E.3    Ingram, R.G.4
  • 24
    • 34748886657 scopus 로고    scopus 로고
    • PAST: paleontological statistics software package for education and data analysis
    • Hammer, Ø., D. A. T. Harper, and P. D. Ryan. 2001. PAST: paleontological statistics software package for education and data analysis. Palaeontol. Electron. 4:9.
    • (2001) Palaeontol. Electron. , vol.4 , pp. 9
    • Hammer, Ø.1    Harper, D.A.T.2    Ryan, P.D.3
  • 25
    • 66149128102 scopus 로고    scopus 로고
    • The radiocarbon signature of microorganisms in the mesopelagic ocean
    • Hansman, R. L., et al. 2009. The radiocarbon signature of microorganisms in the mesopelagic ocean. Proc. Natl. Acad. Sci. U. S. A. 106:6513-6518.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 6513-6518
    • Hansman, R.L.1
  • 26
    • 80052888507 scopus 로고    scopus 로고
    • Community structure and function of planktonic Crenarchaeota: changes with depth in the South China Sea
    • Hu, A., N. Jiao, and C. L. Zhang. 2011. Community structure and function of planktonic Crenarchaeota: changes with depth in the South China Sea. Microb. Ecol. 61:549-563.
    • (2011) Microb. Ecol. , vol.61 , pp. 549-563
    • Hu, A.1    Jiao, N.2    Zhang, C.L.3
  • 27
    • 78649484001 scopus 로고    scopus 로고
    • Community structures of ammonia-oxidising archaea and bacteria in high-altitude lakes on the Tibetan Plateau
    • Hu, A., et al. 2010. Community structures of ammonia-oxidising archaea and bacteria in high-altitude lakes on the Tibetan Plateau. Freshw. Biol. 55:2375-2390.
    • (2010) Freshw. Biol. , vol.55 , pp. 2375-2390
    • Hu, A.1
  • 28
    • 44449178480 scopus 로고    scopus 로고
    • Resource partitioning and sympatric differentiation among closely related bacterioplankton
    • Hunt, D. E., et al. 2008. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320:1081-1085.
    • (2008) Science , vol.320 , pp. 1081-1085
    • Hunt, D.E.1
  • 29
    • 77954758453 scopus 로고    scopus 로고
    • Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean
    • Jiao, N., et al. 2010. Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nat. Rev. Microbiol. 8:593-599.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 593-599
    • Jiao, N.1
  • 30
    • 0037184542 scopus 로고    scopus 로고
    • Influence of hydrographic conditions on picoplankton distribution in the East China Sea
    • Jiao, N., Y. Yang, H. Koshikawa, and M. Watanabe. 2002. Influence of hydrographic conditions on picoplankton distribution in the East China Sea. Aquat. Microb. Ecol. 30:37-48.
    • (2002) Aquat. Microb. Ecol. , vol.30 , pp. 37-48
    • Jiao, N.1    Yang, Y.2    Koshikawa, H.3    Watanabe, M.4
  • 31
    • 69949094273 scopus 로고    scopus 로고
    • Ammonia-oxidizing Archaea in the Arctic Ocean and Antarctic coastal waters
    • Kalanetra, K. M., N. Bano, and J. T. Hollibaugh. 2009. Ammonia-oxidizing Archaea in the Arctic Ocean and Antarctic coastal waters. Environ. Microbiol. 11:2434-2445.
    • (2009) Environ. Microbiol. , vol.11 , pp. 2434-2445
    • Kalanetra, K.M.1    Bano, N.2    Hollibaugh, J.T.3
  • 32
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner, M. B., E. F. DeLong, and D. M. Karl. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409:507-510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 33
    • 25644435673 scopus 로고    scopus 로고
    • Isolation of an autotrophic ammonia-oxidizing marine archaeon
    • Könneke, M., et al. 2005. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437:543-546.
    • (2005) Nature , vol.437 , pp. 543-546
    • Könneke, M.1
  • 34
    • 68549085316 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific Subtropical Gyre
    • Konstantinidis, K. T., J. Braff, D. M. Karl, and E. F. DeLong. 2009. Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific Subtropical Gyre. Appl. Environ. Microbiol. 75:5345-5355.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5345-5355
    • Konstantinidis, K.T.1    Braff, J.2    Karl, D.M.3    DeLong, E.F.4
  • 35
    • 0034775280 scopus 로고    scopus 로고
    • Ammonia-oxidizing bacteria: a model for molecular microbial ecology
    • Kowalchuk, G. A., and J. R. Stephen. 2001. Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu. Rev. Microbiol. 55:485-529.
    • (2001) Annu. Rev. Microbiol. , vol.55 , pp. 485-529
    • Kowalchuk, G.A.1    Stephen, J.R.2
  • 36
    • 34249784850 scopus 로고    scopus 로고
    • Euphotic zone depth: its derivation and implication to ocean-color remote sensing
    • Lee, Z. P., et al. 2007. Euphotic zone depth: its derivation and implication to ocean-color remote sensing. J. Geophys. Res. 112:C03009.
    • (2007) J. Geophys. Res. , vol.112
    • Lee, Z.P.1
  • 37
    • 70349816752 scopus 로고    scopus 로고
    • Community structure of Archaea in the water column above gas hydrates in the Gulf of Mexico
    • Liu, B., et al. 2009. Community structure of Archaea in the water column above gas hydrates in the Gulf of Mexico. Geomicrobiol. J. 26:363-369.
    • (2009) Geomicrobiol. J. , vol.26 , pp. 363-369
    • Liu, B.1
  • 38
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone, C., M. Hamady, and R. Knight. 2006. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7:371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 39
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig, W., et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 40
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
    • Martens-Habbena, W., P. M. Berube, H. Urakawa, J. R. de la Torre, and D. A. Stahl. 2009. Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461:976-979.
    • (2009) Nature , vol.461 , pp. 976-979
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    de la Torre, J.R.4    Stahl, D.A.5
  • 41
    • 31544448331 scopus 로고    scopus 로고
    • Microbial biogeography: putting microorganisms on the map
    • Martiny, J. B. H., et al. 2006. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4:102-112.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 102-112
    • Martiny, J.B.H.1
  • 42
    • 0034114417 scopus 로고    scopus 로고
    • A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
    • Massana, R., E. F. DeLong, and C. Pedros-Alio. 2000. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl. Environ. Microbiol. 66:1777-1787.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1777-1787
    • Massana, R.1    DeLong, E.F.2    Pedros-Alio, C.3
  • 43
    • 0001588448 scopus 로고
    • A new high pressure equation of state for seawater
    • Millero, F. J., C. Chen, A. Bradshaw, and K. Schleicher. 1980. A new high pressure equation of state for seawater. Deep Sea Res. 27A:255-264.
    • (1980) Deep Sea Res , vol.27 A , pp. 255-264
    • Millero, F.J.1    Chen, C.2    Bradshaw, A.3    Schleicher, K.4
  • 44
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • Mincer, T. J., et al. 2007. Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ. Microbiol. 9:1162-1175.
    • (2007) Environ. Microbiol. , vol.9 , pp. 1162-1175
    • Mincer, T.J.1
  • 45
    • 77956256740 scopus 로고    scopus 로고
    • High diversity of ammoniaoxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific
    • doi: 10.1111/j.14622920.2010.02218.x
    • Molina, V., L. Belmar, and O. Ulloa. 2010. High diversity of ammoniaoxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific. Environ. Microbiol. 12:2450-2465. doi:10.1111/j.14622920.2010.02218.x.
    • (2010) Environ. Microbiol. , vol.12 , pp. 2450-2465
    • Molina, V.1    Belmar, L.2    Ulloa, O.3
  • 46
    • 52949137846 scopus 로고    scopus 로고
    • The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
    • Nicol, G. W., S. Leininger, C. Schleper, and J. I. Prosser. 2008. The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ. Microbiol. 10:2966-2978.
    • (2008) Environ. Microbiol , vol.10 , pp. 2966-2978
    • Nicol, G.W.1    Leininger, S.2    Schleper, C.3    Prosser, J.I.4
  • 47
    • 77950023784 scopus 로고    scopus 로고
    • Evolutionary divergence and biogeography of sympatric nichedifferentiated bacterial populations
    • Oakley, B. B., F. Carbonero, C. J. van der Gast, R. J. Hawkins, and K. J. Purdy. 2010. Evolutionary divergence and biogeography of sympatric nichedifferentiated bacterial populations. ISME J. 4:488-497.
    • (2010) ISME J , vol.4 , pp. 488-497
    • Oakley, B.B.1    Carbonero, F.2    van der Gast, C.J.3    Hawkins, R.J.4    Purdy, K.J.5
  • 48
    • 0042853314 scopus 로고    scopus 로고
    • Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
    • Ochsenreiter, T., D. Selezi, A. Quaiser, L. Bonch-Osmolovskaya, and C. Schleper. 2003. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ. Microbiol. 5:787-797.
    • (2003) Environ. Microbiol. , vol.5 , pp. 787-797
    • Ochsenreiter, T.1    Selezi, D.2    Quaiser, A.3    Bonch-Osmolovskaya, L.4    Schleper, C.5
  • 49
    • 77954212697 scopus 로고    scopus 로고
    • Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic's interior
    • Reinthaler, T., H. M. van Aken, and G. J. Herndl. 2010. Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic's interior. Deep Sea Res. II 57:1572-1580.
    • (2010) Deep Sea Res. II , vol.57 , pp. 1572-1580
    • Reinthaler, T.1    van Aken, H.M.2    Herndl, G.J.3
  • 50
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 51
    • 78049432317 scopus 로고    scopus 로고
    • Activity, abundance and diversity of nitrifying archaea and bacteria in the central California current
    • Santoro, A. E., K. L. Casciotti, and C. A. Francis. 2010. Activity, abundance and diversity of nitrifying archaea and bacteria in the central California current. Environ. Microbiol. 12:1989-2006.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1989-2006
    • Santoro, A.E.1    Casciotti, K.L.2    Francis, C.A.3
  • 52
    • 68249130811 scopus 로고    scopus 로고
    • Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean
    • Schattenhofer, M., et al. 2009. Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. Environ. Microbiol. 11:2078-2093.
    • (2009) Environ. Microbiol. , vol.11 , pp. 2078-2093
    • Schattenhofer, M.1
  • 53
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P. D., and J. Handelsman. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71:1501-1506.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 54
    • 77955273494 scopus 로고    scopus 로고
    • Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota
    • Spang, A., et al. 2010. Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol. 18:331-340.
    • (2010) Trends Microbiol , vol.18 , pp. 331-340
    • Spang, A.1
  • 55
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis, A., T. Ludwig, and H. Meier. 2005. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21:456-463.
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 57
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch, A. H., et al. 2005. Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol. 7:1985-1995.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1985-1995
    • Treusch, A.H.1
  • 58
    • 70349472694 scopus 로고    scopus 로고
    • Seasonality and vertical structure of microbial communities in an ocean gyre
    • Treusch, A. H., et al. 2009. Seasonality and vertical structure of microbial communities in an ocean gyre. ISME J. 3:1148-1163.
    • (2009) ISME J , vol.3 , pp. 1148-1163
    • Treusch, A.H.1
  • 59
    • 11144354360 scopus 로고    scopus 로고
    • Environmental genome shotgun sequencing of the Sargasso Sea
    • Venter, J. C., et al. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
    • (2004) Science , vol.304 , pp. 66-74
    • Venter, J.C.1
  • 60
    • 77952739182 scopus 로고    scopus 로고
    • Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
    • Walker, C. B., et al. 2010. Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc. Natl. Acad. Sci. U. S. A. 107:8818-8823.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 8818-8823
    • Walker, C.B.1
  • 61
    • 33747596691 scopus 로고    scopus 로고
    • Archaeal nitrification in the ocean
    • Wuchter, C., et al. 2006. Archaeal nitrification in the ocean. Proc. Natl. Acad. Sci. U. S. A. 103:12317-12322.
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 12317-12322
    • Wuchter, C.1
  • 62
    • 67349250384 scopus 로고    scopus 로고
    • A first insight into the occurrence and expression of functional amoA and accA genes of au-totrophic and ammonia-oxidizing bathypelagic Crenarchaeota of Tyrrhenian Sea
    • Yakimov, M. M., V. L. Conoa, and R. Denaroa. 2009. A first insight into the occurrence and expression of functional amoA and accA genes of au-totrophic and ammonia-oxidizing bathypelagic Crenarchaeota of Tyrrhenian Sea. Deep Sea Res. II 56:748-754.
    • (2009) Deep Sea Res. II , vol.56 , pp. 748-754
    • Yakimov, M.M.1    Conoa, V.L.2    Denaroa, R.3
  • 63
    • 79956280960 scopus 로고    scopus 로고
    • Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea)
    • Yakimov, M. M., et al. 2011. Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea). ISME J. 5:945-961.
    • (2011) ISME J , vol.5 , pp. 945-961
    • Yakimov, M.M.1
  • 64
    • 33846053229 scopus 로고    scopus 로고
    • Phylogenetic diversity of planktonic archaea in the estuarine region of East China Sea
    • Zeng, Y. H., H. Y. Li, and N. Z. Jiao. 2007. Phylogenetic diversity of planktonic archaea in the estuarine region of East China Sea. Microbiol. Res. 162:26-36.
    • (2007) Microbiol. Res. , vol.162 , pp. 26-36
    • Zeng, Y.H.1    Li, H.Y.2    Jiao, N.Z.3
  • 65
    • 45149092660 scopus 로고    scopus 로고
    • Evaluation of terminalrestriction fragment length polymorphism analysis in contrasting marine environments
    • Zhang, R., V. Thiyagarajan, and P. Y. Qian. 2008. Evaluation of terminalrestriction fragment length polymorphism analysis in contrasting marine environments. FEMS Microbiol. Ecol. 65:169-178.
    • (2008) FEMS Microbiol. Ecol. , vol.65 , pp. 169-178
    • Zhang, R.1    Thiyagarajan, V.2    Qian, P.Y.3
  • 66
    • 34547852254 scopus 로고    scopus 로고
    • Dynamics of aerobic anoxygenic phototrophic bacteria in the East China Sea
    • Zhang, Y., and N. Jiao. 2007. Dynamics of aerobic anoxygenic phototrophic bacteria in the East China Sea. FEMS Microbiol. Ecol. 61:459-469
    • (2007) FEMS Microbiol. Ecol. , vol.61 , pp. 459-469
    • Zhang, Y.1    Jiao, N.2


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