-
1
-
-
57649114800
-
Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
-
Agogué, H., M. Brink, J. Dinasquet, and G. J. Herndl. 2008. Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456:788-791.
-
(2008)
Nature
, vol.456
, pp. 788-791
-
-
Agogué, H.1
Brink, M.2
Dinasquet, J.3
Herndl, G.J.4
-
2
-
-
78651277082
-
Water mass specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing
-
Agogué, H., D. Lamy, P. R. Neal, M. L. Sogin, and G. J. Herndl. 2011. Water mass specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol. Ecol. 20:258-274.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 258-274
-
-
Agogué, H.1
Lamy, D.2
Neal, P.R.3
Sogin, M.L.4
Herndl, G.J.5
-
3
-
-
2342565752
-
Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages
-
Bano, N., S. Ruffin, B. Ransom, and J. T. Hollibaugh. 2004. Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages. Appl. Environ. Microbiol. 70:781-789.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 781-789
-
-
Bano, N.1
Ruffin, S.2
Ransom, B.3
Hollibaugh, J.T.4
-
4
-
-
33845520639
-
Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari
-
Beman, J. M., and C. A. Francis. 2006. Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari, Mexico. Appl. Environ. Microbiol. 72:7767-7777.
-
(2006)
Mexico. Appl. Environ. Microbiol.
, vol.72
, pp. 7767-7777
-
-
Beman, J.M.1
Francis, C.A.2
-
5
-
-
42049122119
-
Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
-
Beman, J. M., B. N. Popp, and C. A. Francis. 2008. Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2:429-441.
-
(2008)
ISME J
, vol.2
, pp. 429-441
-
-
Beman, J.M.1
Popp, B.N.2
Francis, C.A.3
-
6
-
-
39149118031
-
Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
-
Brochier-Armanet, C., B. Boussau, S. Gribaldo, and P. Forterre. 2008. Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat. Rev. Microbiol. 6:245-252.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 245-252
-
-
Brochier-Armanet, C.1
Boussau, B.2
Gribaldo, S.3
Forterre, P.4
-
7
-
-
60749109199
-
Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
-
Carlson, C. A., et al. 2009. Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. ISME J. 3:283-295.
-
(2009)
ISME J
, vol.3
, pp. 283-295
-
-
Carlson, C.A.1
-
8
-
-
0042784633
-
Physicalbiological sources for dense algal blooms near the Changjiang River
-
Chen, C., J. Zhu, R. C. Beardsley, and P. J. S. Franks. 2003. Physicalbiological sources for dense algal blooms near the Changjiang River. Geophys. Res. Lett. 30:22-1-22-4.
-
(2003)
Geophys. Res. Lett.
, vol.30
, pp. 221-224
-
-
Chen, C.1
Zhu, J.2
Beardsley, R.C.3
Franks, P.J.S.4
-
9
-
-
77953940648
-
Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean
-
Church, M. J., B. Wai, D. M. Karl, and E. F. DeLong. 2010. Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environ. Microbiol. 12:679-688.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 679-688
-
-
Church, M.J.1
Wai, B.2
Karl, D.M.3
DeLong, E.F.4
-
10
-
-
67649610667
-
T-REX: software for the processing and analysis of T-RFLP data
-
Culman, S., R. Bukowski, H. Gauch, H. Cadillo-Quiroz, and D. Buckley. 2009. T-REX: software for the processing and analysis of T-RFLP data. BMC Bioinformatics 10:171.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 171
-
-
Culman, S.1
Bukowski, R.2
Gauch, H.3
Cadillo-Quiroz, H.4
Buckley, D.5
-
11
-
-
58549113144
-
Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranean Sea
-
De Corte, D., T. Yokokawa, M. M. Varela, H. Agogue, and G. J. Herndl. 2009. Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranean Sea. ISME J. 3:147-158.
-
(2009)
ISME J
, vol.3
, pp. 147-158
-
-
De Corte, D.1
Yokokawa, T.2
Varela, M.M.3
Agogue, H.4
Herndl, G.J.5
-
12
-
-
0026755238
-
Archaea in coastal marine environment
-
DeLong, E. F. 1992. Archaea in coastal marine environment. Proc. Natl. Acad. Sci. U. S. A. 89:5685-5689.
-
(1992)
Proc. Natl. Acad. Sci. U. S. A.
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
13
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong, E. F., et al. 2006. Community genomics among stratified microbial assemblages in the ocean's interior. Science 311:496-503.
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
-
14
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis, C. A., K. J. Roberts, J. M. Beman, A. E. Santoro, and B. B. Oakley. 2005. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. U. S. A. 102:14683-14688.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
15
-
-
66149150877
-
Microbial community structure and its functional implications
-
Fuhrman, J. A. 2009. Microbial community structure and its functional implications. Nature 459:193-199.
-
(2009)
Nature
, vol.459
, pp. 193-199
-
-
Fuhrman, J.A.1
-
16
-
-
0026525546
-
Novel major archaebacterial group from marine plankton
-
Fuhrman, J. A., K. McCallum, and A. A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature 356:148-149.
-
(1992)
Nature
, vol.356
, pp. 148-149
-
-
Fuhrman, J.A.1
McCallum, K.2
Davis, A.A.3
-
17
-
-
63849288893
-
Archaeal diversity and a gene for ammonia oxidation are coupled to oceanic circulation
-
Galand, P. E., et al. 2009. Archaeal diversity and a gene for ammonia oxidation are coupled to oceanic circulation. Environ. Microbiol. 11:971-980.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 971-980
-
-
Galand, P.E.1
-
18
-
-
77950027652
-
Hydrography shapes bacterial biogeography of the deep Arctic Ocean
-
Galand, P. E., M. Potvin, E. O. Casamayor, and C. Lovejoy. 2009. Hydrography shapes bacterial biogeography of the deep Arctic Ocean. ISME J. 4:564-576.
-
(2009)
ISME J
, vol.4
, pp. 564-576
-
-
Galand, P.E.1
Potvin, M.2
Casamayor, E.O.3
Lovejoy, C.4
-
19
-
-
0033929777
-
Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of group I
-
Garcia-Martinez, J., and F. Rodriguez-Valera. 2000. Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of group I. Mol. Ecol. 9:935-948.
-
(2000)
Mol. Ecol.
, vol.9
, pp. 935-948
-
-
Garcia-Martinez, J.1
Rodriguez-Valera, F.2
-
20
-
-
0000803388
-
The population frequencies of species and the estimation of population parameters
-
Good, I. J. 1953. The population frequencies of species and the estimation of population parameters. Biometrika 40:237-264.
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.J.1
-
21
-
-
33845286513
-
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
-
Hallam, S. J., et al. 2006. Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc. Natl. Acad. Sci. U. S. A. 103:18296-18301.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 18296-18301
-
-
Hallam, S.J.1
-
22
-
-
33646260901
-
Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota
-
Hallam, S. J., et al. 2006. Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol. 4:e95.
-
(2006)
PLoS Biol
, vol.4
-
-
Hallam, S.J.1
-
23
-
-
44949223320
-
Water masses and biogeography of picoeukaryote assemblages in a cold hydrographically complex system
-
Hamilton, A. K., C. Lovejoy, P. E. Galand, and R. G. Ingram. 2008. Water masses and biogeography of picoeukaryote assemblages in a cold hydrographically complex system. Limnol. Oceanogr. 53:922-935.
-
(2008)
Limnol. Oceanogr.
, vol.53
, pp. 922-935
-
-
Hamilton, A.K.1
Lovejoy, C.2
Galand, P.E.3
Ingram, R.G.4
-
24
-
-
34748886657
-
PAST: paleontological statistics software package for education and data analysis
-
Hammer, Ø., D. A. T. Harper, and P. D. Ryan. 2001. PAST: paleontological statistics software package for education and data analysis. Palaeontol. Electron. 4:9.
-
(2001)
Palaeontol. Electron.
, vol.4
, pp. 9
-
-
Hammer, Ø.1
Harper, D.A.T.2
Ryan, P.D.3
-
25
-
-
66149128102
-
The radiocarbon signature of microorganisms in the mesopelagic ocean
-
Hansman, R. L., et al. 2009. The radiocarbon signature of microorganisms in the mesopelagic ocean. Proc. Natl. Acad. Sci. U. S. A. 106:6513-6518.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 6513-6518
-
-
Hansman, R.L.1
-
26
-
-
80052888507
-
Community structure and function of planktonic Crenarchaeota: changes with depth in the South China Sea
-
Hu, A., N. Jiao, and C. L. Zhang. 2011. Community structure and function of planktonic Crenarchaeota: changes with depth in the South China Sea. Microb. Ecol. 61:549-563.
-
(2011)
Microb. Ecol.
, vol.61
, pp. 549-563
-
-
Hu, A.1
Jiao, N.2
Zhang, C.L.3
-
27
-
-
78649484001
-
Community structures of ammonia-oxidising archaea and bacteria in high-altitude lakes on the Tibetan Plateau
-
Hu, A., et al. 2010. Community structures of ammonia-oxidising archaea and bacteria in high-altitude lakes on the Tibetan Plateau. Freshw. Biol. 55:2375-2390.
-
(2010)
Freshw. Biol.
, vol.55
, pp. 2375-2390
-
-
Hu, A.1
-
28
-
-
44449178480
-
Resource partitioning and sympatric differentiation among closely related bacterioplankton
-
Hunt, D. E., et al. 2008. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320:1081-1085.
-
(2008)
Science
, vol.320
, pp. 1081-1085
-
-
Hunt, D.E.1
-
29
-
-
77954758453
-
Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean
-
Jiao, N., et al. 2010. Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nat. Rev. Microbiol. 8:593-599.
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 593-599
-
-
Jiao, N.1
-
30
-
-
0037184542
-
Influence of hydrographic conditions on picoplankton distribution in the East China Sea
-
Jiao, N., Y. Yang, H. Koshikawa, and M. Watanabe. 2002. Influence of hydrographic conditions on picoplankton distribution in the East China Sea. Aquat. Microb. Ecol. 30:37-48.
-
(2002)
Aquat. Microb. Ecol.
, vol.30
, pp. 37-48
-
-
Jiao, N.1
Yang, Y.2
Koshikawa, H.3
Watanabe, M.4
-
31
-
-
69949094273
-
Ammonia-oxidizing Archaea in the Arctic Ocean and Antarctic coastal waters
-
Kalanetra, K. M., N. Bano, and J. T. Hollibaugh. 2009. Ammonia-oxidizing Archaea in the Arctic Ocean and Antarctic coastal waters. Environ. Microbiol. 11:2434-2445.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2434-2445
-
-
Kalanetra, K.M.1
Bano, N.2
Hollibaugh, J.T.3
-
32
-
-
0035945618
-
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner, M. B., E. F. DeLong, and D. M. Karl. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409:507-510.
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.B.1
DeLong, E.F.2
Karl, D.M.3
-
33
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Könneke, M., et al. 2005. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437:543-546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Könneke, M.1
-
34
-
-
68549085316
-
Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific Subtropical Gyre
-
Konstantinidis, K. T., J. Braff, D. M. Karl, and E. F. DeLong. 2009. Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific Subtropical Gyre. Appl. Environ. Microbiol. 75:5345-5355.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 5345-5355
-
-
Konstantinidis, K.T.1
Braff, J.2
Karl, D.M.3
DeLong, E.F.4
-
35
-
-
0034775280
-
Ammonia-oxidizing bacteria: a model for molecular microbial ecology
-
Kowalchuk, G. A., and J. R. Stephen. 2001. Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu. Rev. Microbiol. 55:485-529.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
36
-
-
34249784850
-
Euphotic zone depth: its derivation and implication to ocean-color remote sensing
-
Lee, Z. P., et al. 2007. Euphotic zone depth: its derivation and implication to ocean-color remote sensing. J. Geophys. Res. 112:C03009.
-
(2007)
J. Geophys. Res.
, vol.112
-
-
Lee, Z.P.1
-
37
-
-
70349816752
-
Community structure of Archaea in the water column above gas hydrates in the Gulf of Mexico
-
Liu, B., et al. 2009. Community structure of Archaea in the water column above gas hydrates in the Gulf of Mexico. Geomicrobiol. J. 26:363-369.
-
(2009)
Geomicrobiol. J.
, vol.26
, pp. 363-369
-
-
Liu, B.1
-
38
-
-
33748713890
-
UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone, C., M. Hamady, and R. Knight. 2006. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7:371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
39
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig, W., et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
40
-
-
70350052417
-
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
-
Martens-Habbena, W., P. M. Berube, H. Urakawa, J. R. de la Torre, and D. A. Stahl. 2009. Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461:976-979.
-
(2009)
Nature
, vol.461
, pp. 976-979
-
-
Martens-Habbena, W.1
Berube, P.M.2
Urakawa, H.3
de la Torre, J.R.4
Stahl, D.A.5
-
41
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny, J. B. H., et al. 2006. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4:102-112.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
-
42
-
-
0034114417
-
A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
-
Massana, R., E. F. DeLong, and C. Pedros-Alio. 2000. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl. Environ. Microbiol. 66:1777-1787.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1777-1787
-
-
Massana, R.1
DeLong, E.F.2
Pedros-Alio, C.3
-
43
-
-
0001588448
-
A new high pressure equation of state for seawater
-
Millero, F. J., C. Chen, A. Bradshaw, and K. Schleicher. 1980. A new high pressure equation of state for seawater. Deep Sea Res. 27A:255-264.
-
(1980)
Deep Sea Res
, vol.27 A
, pp. 255-264
-
-
Millero, F.J.1
Chen, C.2
Bradshaw, A.3
Schleicher, K.4
-
44
-
-
34247847886
-
Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
-
Mincer, T. J., et al. 2007. Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ. Microbiol. 9:1162-1175.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1162-1175
-
-
Mincer, T.J.1
-
45
-
-
77956256740
-
High diversity of ammoniaoxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific
-
doi: 10.1111/j.14622920.2010.02218.x
-
Molina, V., L. Belmar, and O. Ulloa. 2010. High diversity of ammoniaoxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific. Environ. Microbiol. 12:2450-2465. doi:10.1111/j.14622920.2010.02218.x.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 2450-2465
-
-
Molina, V.1
Belmar, L.2
Ulloa, O.3
-
46
-
-
52949137846
-
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
-
Nicol, G. W., S. Leininger, C. Schleper, and J. I. Prosser. 2008. The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ. Microbiol. 10:2966-2978.
-
(2008)
Environ. Microbiol
, vol.10
, pp. 2966-2978
-
-
Nicol, G.W.1
Leininger, S.2
Schleper, C.3
Prosser, J.I.4
-
47
-
-
77950023784
-
Evolutionary divergence and biogeography of sympatric nichedifferentiated bacterial populations
-
Oakley, B. B., F. Carbonero, C. J. van der Gast, R. J. Hawkins, and K. J. Purdy. 2010. Evolutionary divergence and biogeography of sympatric nichedifferentiated bacterial populations. ISME J. 4:488-497.
-
(2010)
ISME J
, vol.4
, pp. 488-497
-
-
Oakley, B.B.1
Carbonero, F.2
van der Gast, C.J.3
Hawkins, R.J.4
Purdy, K.J.5
-
48
-
-
0042853314
-
Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
-
Ochsenreiter, T., D. Selezi, A. Quaiser, L. Bonch-Osmolovskaya, and C. Schleper. 2003. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ. Microbiol. 5:787-797.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 787-797
-
-
Ochsenreiter, T.1
Selezi, D.2
Quaiser, A.3
Bonch-Osmolovskaya, L.4
Schleper, C.5
-
49
-
-
77954212697
-
Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic's interior
-
Reinthaler, T., H. M. van Aken, and G. J. Herndl. 2010. Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic's interior. Deep Sea Res. II 57:1572-1580.
-
(2010)
Deep Sea Res. II
, vol.57
, pp. 1572-1580
-
-
Reinthaler, T.1
van Aken, H.M.2
Herndl, G.J.3
-
50
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
51
-
-
78049432317
-
Activity, abundance and diversity of nitrifying archaea and bacteria in the central California current
-
Santoro, A. E., K. L. Casciotti, and C. A. Francis. 2010. Activity, abundance and diversity of nitrifying archaea and bacteria in the central California current. Environ. Microbiol. 12:1989-2006.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1989-2006
-
-
Santoro, A.E.1
Casciotti, K.L.2
Francis, C.A.3
-
52
-
-
68249130811
-
Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean
-
Schattenhofer, M., et al. 2009. Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. Environ. Microbiol. 11:2078-2093.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2078-2093
-
-
Schattenhofer, M.1
-
53
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss, P. D., and J. Handelsman. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71:1501-1506.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
54
-
-
77955273494
-
Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota
-
Spang, A., et al. 2010. Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol. 18:331-340.
-
(2010)
Trends Microbiol
, vol.18
, pp. 331-340
-
-
Spang, A.1
-
55
-
-
14644397888
-
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis, A., T. Ludwig, and H. Meier. 2005. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21:456-463.
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
56
-
-
0004248459
-
-
(*and other methods), version 4. Sinauer Associates, Sunderland, MA
-
Swofford, D. L. 2003. PAUP*, phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer Associates, Sunderland, MA.
-
(2003)
PAUP*, phylogenetic analysis using parsimony
-
-
Swofford, D.L.1
-
57
-
-
28644435323
-
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
Treusch, A. H., et al. 2005. Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol. 7:1985-1995.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1985-1995
-
-
Treusch, A.H.1
-
58
-
-
70349472694
-
Seasonality and vertical structure of microbial communities in an ocean gyre
-
Treusch, A. H., et al. 2009. Seasonality and vertical structure of microbial communities in an ocean gyre. ISME J. 3:1148-1163.
-
(2009)
ISME J
, vol.3
, pp. 1148-1163
-
-
Treusch, A.H.1
-
59
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter, J. C., et al. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
-
60
-
-
77952739182
-
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
-
Walker, C. B., et al. 2010. Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc. Natl. Acad. Sci. U. S. A. 107:8818-8823.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 8818-8823
-
-
Walker, C.B.1
-
61
-
-
33747596691
-
Archaeal nitrification in the ocean
-
Wuchter, C., et al. 2006. Archaeal nitrification in the ocean. Proc. Natl. Acad. Sci. U. S. A. 103:12317-12322.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 12317-12322
-
-
Wuchter, C.1
-
62
-
-
67349250384
-
A first insight into the occurrence and expression of functional amoA and accA genes of au-totrophic and ammonia-oxidizing bathypelagic Crenarchaeota of Tyrrhenian Sea
-
Yakimov, M. M., V. L. Conoa, and R. Denaroa. 2009. A first insight into the occurrence and expression of functional amoA and accA genes of au-totrophic and ammonia-oxidizing bathypelagic Crenarchaeota of Tyrrhenian Sea. Deep Sea Res. II 56:748-754.
-
(2009)
Deep Sea Res. II
, vol.56
, pp. 748-754
-
-
Yakimov, M.M.1
Conoa, V.L.2
Denaroa, R.3
-
63
-
-
79956280960
-
Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea)
-
Yakimov, M. M., et al. 2011. Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea). ISME J. 5:945-961.
-
(2011)
ISME J
, vol.5
, pp. 945-961
-
-
Yakimov, M.M.1
-
64
-
-
33846053229
-
Phylogenetic diversity of planktonic archaea in the estuarine region of East China Sea
-
Zeng, Y. H., H. Y. Li, and N. Z. Jiao. 2007. Phylogenetic diversity of planktonic archaea in the estuarine region of East China Sea. Microbiol. Res. 162:26-36.
-
(2007)
Microbiol. Res.
, vol.162
, pp. 26-36
-
-
Zeng, Y.H.1
Li, H.Y.2
Jiao, N.Z.3
-
65
-
-
45149092660
-
Evaluation of terminalrestriction fragment length polymorphism analysis in contrasting marine environments
-
Zhang, R., V. Thiyagarajan, and P. Y. Qian. 2008. Evaluation of terminalrestriction fragment length polymorphism analysis in contrasting marine environments. FEMS Microbiol. Ecol. 65:169-178.
-
(2008)
FEMS Microbiol. Ecol.
, vol.65
, pp. 169-178
-
-
Zhang, R.1
Thiyagarajan, V.2
Qian, P.Y.3
-
66
-
-
34547852254
-
Dynamics of aerobic anoxygenic phototrophic bacteria in the East China Sea
-
Zhang, Y., and N. Jiao. 2007. Dynamics of aerobic anoxygenic phototrophic bacteria in the East China Sea. FEMS Microbiol. Ecol. 61:459-469
-
(2007)
FEMS Microbiol. Ecol.
, vol.61
, pp. 459-469
-
-
Zhang, Y.1
Jiao, N.2
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