Interoperability driven integration of biomedical data sources

Studies in Health Technology and Informatics

Volumn 169, Issue , 2011, Pages 185-189

  Teodoro, Douglas ^a   Choquet, Rémy ^c   Schober, Daniel ^d   Mels, Giovanni ^e   Pasche, Emilie ^a   Ruch, Patrick ^b   Lovis, Christian ^a  

^a GENEVA UNIVERSITY HOSPITALS   (Switzerland)

^b University of Applied Sciences   (Switzerland)

^c INSERM   (France)

^d UNIVERSITY OF FREIBURG   (Germany)

^e Agfa HealthCare   (Belgium)

Author keywords

Data Integration; Interoperability; Ontology; Semantic Integration

Indexed keywords

HEALTH CARE; INTEROPERABILITY; NATURAL LANGUAGE PROCESSING SYSTEMS; ONTOLOGY; SYNTACTICS;

HEALTHCARE INSTITUTIONS; OPERATIONAL DATABASE; SEMANTIC INTEGRATION; SEMANTIC INTEROPERABILITY; SEMANTIC WEB TECHNOLOGY; SYSTEM'S PERFORMANCE; TECHNICAL LEVELS; UBIQUITOUS ACCESS;

DATA INTEGRATION;

EID: 83055191981     PISSN: 09269630     EISSN: 18798365     Source Type: Book Series    
DOI: 10.3233/978-1-60750-806-9-185     Document Type: Conference Paper

References (14)

1. Shah SP, et al. Atlas-a data warehouse for integrative bioinformatics. BMC Bioinformatics. 2005;6: 34.
2. Davidson SB, Overton GC, Tannen V, Wong L. BioKleisli: A Digital Library for Biomedical Researchers. International Journal on Digital Libraries. 1997;1:36-53. (Pubitemid 127078346)
3. Stevens R, Baker P, Bechhofer S, et al. TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. Bioinformatics. 2000;16(2):184-186.
4. Shironoshita EP, Jean-Mary YR, Bradley RM, Kabuka MR. semCDI: a query formulation for semantic data integration in caBIG. J Am Med Inform Assoc. 2008;15:559-568. (Pubitemid 351885157)
5. Cruz I, Xiao H. Ontology driven data integration in heterogeneous networks. Complex Systems in Knowledgebased Environments: Theory, Models and Applications. 2009:75-98.
6. Lovis C, Colaert D, Stroetmann VN. DebugIT for patient safety-improving the treatment with antibiotics through multimedia data mining of heterogeneous clinical data. Stud Health Tech Inform. 2008;136:641
7. Schober D, Boeker M, Bullenkamp J, et al. The DebugIT Core Ontology: semantic integration of antibiotics resistance patterns. Proceedings of MEDINFO 2010; Cape Town; 2010.
8. Tolk A. What Comes After the Semantic Web-PADS Implications for the Dynamic Web. Proceedings of the 20th Workshop on Principles of Advanced and Distributed Simulation (PADS'06); 2006.
9. Broekstra J, Kampman A, Van Harmelen F. Sesame: A generic architecture for storing and querying RDF and RDF schema. Proceedings of The Semantic Web-ISWC 2002; 2002. p. 54-68.
10. Erling O, Mikhailov I. Virtuoso: RDF Support in a Native RDBMS. Semantic Web Information Management; 2010. p. 501-519.
11. Bizer C, Cyganiak R. D2RQ Lessons Learned. W3C Workshop on RDF Access to Relational Databases; 2007.
12. Ruch P, Gobeill J, Tbahriti I, et al. Automatic Assignment of SNOMED Categories: Preliminary and Qualitative Evaluations. First Semantic-Mining Conference on SNOMED CT-SMCS; 2006.
13. Daumke P, Enders F, Simon K, et al. Semantic Annotation of Clinical Text-the Averbis Annotation Editor. Proceedings of the GMDS 2010; Mannheim, Germany.
14. Teodoro D, Choquet R, Pasche E, et al. Biomedical Data Management: a Proposal Framework. Stud Health Technol Inform. 2009;150:175-9.