-
1
-
-
33847032960
-
The Mammalian Epigenome
-
DOI 10.1016/j.cell.2007.01.033, PII S0092867407001286
-
B.E. Bernstein, A. Meissner, and E.S. Lander The mammalian epigenome Cell 128 2007 669 681 (Pubitemid 46273573)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 669-681
-
-
Bernstein, B.E.1
Meissner, A.2
Lander, E.S.3
-
2
-
-
33747154772
-
Anatomical Profiling of Nuclear Receptor Expression Revealsa Hierarchical Transcriptional Network
-
DOI 10.1016/j.cell.2006.06.049, PII S0092867406009779
-
A.L. Bookout, Y. Jeong, M. Downes, R.T. Yu, R.M. Evans, and D.J. Mangelsdorf Anatomical profiling of nuclear receptor expression reveals a hierarchical transcriptional network Cell 126 2006 789 799 (Pubitemid 44233630)
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 789-799
-
-
Bookout, A.L.1
Jeong, Y.2
Downes, M.3
Yu, R.T.4
Evans, R.M.5
Mangelsdorf, D.J.6
-
3
-
-
78650472007
-
C/EBPβ controls exercise-induced cardiac growth and protects against pathological cardiac remodeling
-
P. Bostrom, N. Mann, J. Wu, P.A. Quintero, E.R. Plovie, D. Panakova, R.K. Gupta, C. Xiao, C.A. MacRae, and A. Rosenzweig C/EBPβ controls exercise-induced cardiac growth and protects against pathological cardiac remodeling Cell 143 2010 1072 1083
-
(2010)
Cell
, vol.143
, pp. 1072-1083
-
-
Bostrom, P.1
Mann, N.2
Wu, J.3
Quintero, P.A.4
Plovie, E.R.5
Panakova, D.6
Gupta, R.K.7
Xiao, C.8
MacRae, C.A.9
Rosenzweig, A.10
-
4
-
-
38649099445
-
High-Resolution Mapping and Characterization of Open Chromatin across the Genome
-
DOI 10.1016/j.cell.2007.12.014, PII S0092867407016133
-
A.P. Boyle, S. Davis, H.P. Shulha, P. Meltzer, E.H. Margulies, Z. Weng, T.S. Furey, and G.E. Crawford High-resolution mapping and characterization of open chromatin across the genome Cell 132 2008 311 322 (Pubitemid 351172431)
-
(2008)
Cell
, vol.132
, Issue.2
, pp. 311-322
-
-
Boyle, A.P.1
Davis, S.2
Shulha, H.P.3
Meltzer, P.4
Margulies, E.H.5
Weng, Z.6
Furey, T.S.7
Crawford, G.E.8
-
5
-
-
79952267284
-
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
-
A.P. Boyle, L. Song, B.K. Lee, D. London, D. Keefe, E. Birney, V.R. Iyer, G.E. Crawford, and T.S. Furey High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells Genome Res. 21 2011 456 464
-
(2011)
Genome Res.
, vol.21
, pp. 456-464
-
-
Boyle, A.P.1
Song, L.2
Lee, B.K.3
London, D.4
Keefe, D.5
Birney, E.6
Iyer, V.R.7
Crawford, G.E.8
Furey, T.S.9
-
6
-
-
65549170303
-
Hyperglycemia induces a dynamic cooperativity of histone methylase and demethylase enzymes associated with gene-activating epigenetic marks that coexist on the lysine tail
-
D. Brasacchio, J. Okabe, C. Tikellis, A. Balcerczyk, P. George, E.K. Baker, A.C. Calkin, M. Brownlee, M.E. Cooper, and A. El-Osta Hyperglycemia induces a dynamic cooperativity of histone methylase and demethylase enzymes associated with gene-activating epigenetic marks that coexist on the lysine tail Diabetes 58 2009 1229 1236
-
(2009)
Diabetes
, vol.58
, pp. 1229-1236
-
-
Brasacchio, D.1
Okabe, J.2
Tikellis, C.3
Balcerczyk, A.4
George, P.5
Baker, E.K.6
Calkin, A.C.7
Brownlee, M.8
Cooper, M.E.9
El-Osta, A.10
-
7
-
-
24344507734
-
Krox20 stimulates adipogenesis via C/EBPβ-dependent and -independent mechanisms
-
DOI 10.1016/j.cmet.2004.12.009, PII S1550413105000276
-
Z. Chen, J.I. Torrens, A. Anand, B.M. Spiegelman, and J.M. Friedman Krox20 stimulates adipogenesis via C/EBPbeta-dependent and -independent mechanisms Cell Metab. 1 2005 93 106 (Pubitemid 43960592)
-
(2005)
Cell Metabolism
, vol.1
, Issue.2
, pp. 93-106
-
-
Chen, Z.1
Torrens, J.I.2
Anand, A.3
Spiegelman, B.M.4
Friedman, J.M.5
-
8
-
-
33751038416
-
A dynamic expression survey identifies transcription factors relevant in mouse digestive tract development
-
DOI 10.1242/dev.02537
-
M.Y. Choi, A.I. Romer, M. Hu, M. Lepourcelet, A. Mechoor, A. Yesilaltay, M. Krieger, P.A. Gray, and R.A. Shivdasani A dynamic expression survey identifies transcription factors relevant in mouse digestive tract development Development 133 2006 4119 4129 (Pubitemid 44756204)
-
(2006)
Development
, vol.133
, Issue.20
, pp. 4119-4129
-
-
Choi, M.Y.1
Romer, A.I.2
Hu, M.3
Lepourcelet, M.4
Mechoor, A.5
Yesilaltay, A.6
Krieger, M.7
Gray, P.A.8
Shivdasani, R.A.9
-
9
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
M.P. Creyghton, A.W. Cheng, G.G. Welstead, T. Kooistra, B.W. Carey, E.J. Steine, J. Hanna, M.A. Lodato, G.M. Frampton, and P.A. Sharp Histone H3K27ac separates active from poised enhancers and predicts developmental state Proc. Natl. Acad. Sci. USA 107 2010 21931 21936
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
10
-
-
38549144819
-
A survey of DNA motif finding algorithms
-
DOI 10.1186/1471-2105-8-S7-S21
-
M.K. Das, and H.K. Dai A survey of DNA motif finding algorithms BMC Bioinformatics 8 Suppl 7 2007 S21 10.1186/1471-2105-8-S7-S21 (Pubitemid 352015084)
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Das, M.K.1
Dai, H.-K.2
-
11
-
-
0023663888
-
Expression of a single transfected cDNA converts fibroblasts to myoblasts
-
R.L. Davis, H. Weintraub, and A.B. Lassar Expression of a single transfected cDNA converts fibroblasts to myoblasts Cell 51 1987 987 1000
-
(1987)
Cell
, vol.51
, pp. 987-1000
-
-
Davis, R.L.1
Weintraub, H.2
Lassar, A.B.3
-
12
-
-
37449021303
-
Interferon regulatory factors are transcriptional regulators of adipogenesis
-
J. Eguchi, Q.W. Yan, D.E. Schones, M. Kamal, C.H. Hsu, M.Q. Zhang, G.E. Crawford, and E.D. Rosen Interferon regulatory factors are transcriptional regulators of adipogenesis Cell Metab. 7 2008 86 94
-
(2008)
Cell Metab.
, vol.7
, pp. 86-94
-
-
Eguchi, J.1
Yan, Q.W.2
Schones, D.E.3
Kamal, M.4
Hsu, C.H.5
Zhang, M.Q.6
Crawford, G.E.7
Rosen, E.D.8
-
13
-
-
33845341455
-
Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques
-
DOI 10.1101/gr.4140006
-
L. Elnitski, V.X. Jin, P.J. Farnham, and S.J. Jones Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques Genome Res. 16 2006 1455 1464 (Pubitemid 44878485)
-
(2006)
Genome Research
, vol.16
, Issue.12
, pp. 1455-1464
-
-
Elnitski, L.1
Jin, V.X.2
Farnham, P.J.3
Jones, S.J.M.4
-
14
-
-
53349101264
-
Transient high glucose causes persistent epigenetic changes and altered gene expression during subsequent normoglycemia
-
A. El-Osta, D. Brasacchio, D. Yao, A. Pocai, P.L. Jones, R.G. Roeder, M.E. Cooper, and M. Brownlee Transient high glucose causes persistent epigenetic changes and altered gene expression during subsequent normoglycemia J. Exp. Med. 205 2008 2409 2417
-
(2008)
J. Exp. Med.
, vol.205
, pp. 2409-2417
-
-
El-Osta, A.1
Brasacchio, D.2
Yao, D.3
Pocai, A.4
Jones, P.L.5
Roeder, R.G.6
Cooper, M.E.7
Brownlee, M.8
-
15
-
-
78650747491
-
Discovery and characterization of chromatin states for systematic annotation of the human genome
-
J. Ernst, and M. Kellis Discovery and characterization of chromatin states for systematic annotation of the human genome Nat. Biotechnol. 28 2010 817 825
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 817-825
-
-
Ernst, J.1
Kellis, M.2
-
16
-
-
68949213578
-
Insights from genomic profiling of transcription factors
-
P.J. Farnham Insights from genomic profiling of transcription factors Nat. Rev. Genet. 10 2009 605 616
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 605-616
-
-
Farnham, P.J.1
-
17
-
-
70349114302
-
A genome-wide screen for spatially restricted expression patterns identifies transcription factors that regulate glial development
-
H. Fu, J. Cai, H. Clevers, E. Fast, S. Gray, R. Greenberg, M.K. Jain, Q. Ma, M. Qiu, and D.H. Rowitch A genome-wide screen for spatially restricted expression patterns identifies transcription factors that regulate glial development J. Neurosci. 29 2009 11399 11408
-
(2009)
J. Neurosci.
, vol.29
, pp. 11399-11408
-
-
Fu, H.1
Cai, J.2
Clevers, H.3
Fast, E.4
Gray, S.5
Greenberg, R.6
Jain, M.K.7
Ma, Q.8
Qiu, M.9
Rowitch, D.H.10
-
18
-
-
77649086970
-
A map of open chromatin in human pancreatic islets
-
K.J. Gaulton, T. Nammo, L. Pasquali, J.M. Simon, P.G. Giresi, M.P. Fogarty, T.M. Panhuis, P. Mieczkowski, A. Secchi, and D. Bosco A map of open chromatin in human pancreatic islets Nat. Genet. 42 2010 255 259
-
(2010)
Nat. Genet.
, vol.42
, pp. 255-259
-
-
Gaulton, K.J.1
Nammo, T.2
Pasquali, L.3
Simon, J.M.4
Giresi, P.G.5
Fogarty, M.P.6
Panhuis, T.M.7
Mieczkowski, P.8
Secchi, A.9
Bosco, D.10
-
19
-
-
40449100030
-
Direct multiplexed measurement of gene expression with color-coded probe pairs
-
DOI 10.1038/nbt1385, PII NBT1385
-
G.K. Geiss, R.E. Bumgarner, B. Birditt, T. Dahl, N. Dowidar, D.L. Dunaway, H.P. Fell, S. Ferree, R.D. George, and T. Grogan Direct multiplexed measurement of gene expression with color-coded probe pairs Nat. Biotechnol. 26 2008 317 325 (Pubitemid 351355126)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.3
, pp. 317-325
-
-
Geiss, G.K.1
Bumgarner, R.E.2
Birditt, B.3
Dahl, T.4
Dowidar, N.5
Dunaway, D.L.6
Fell, H.P.7
Ferree, S.8
George, R.D.9
Grogan, T.10
James, J.J.11
Maysuria, M.12
Mitton, J.D.13
Oliveri, P.14
Osborn, J.L.15
Peng, T.16
Ratcliffe, A.L.17
Webster, P.J.18
Davidson, E.H.19
Hood, L.20
more..
-
20
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
DOI 10.1101/gr.5533506
-
P.G. Giresi, J. Kim, R.M. McDaniell, V.R. Iyer, and J.D. Lieb FAIRE (formaldehyde-assisted isolation of regulatory elements) isolates active regulatory elements from human chromatin Genome Res. 17 2007 877 885 (Pubitemid 46919722)
-
(2007)
Genome Research
, vol.17
, Issue.6
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
21
-
-
35348908406
-
Systematic Gene Expression Mapping Clusters Nuclear Receptors According to Their Function in the Brain
-
DOI 10.1016/j.cell.2007.09.012, PII S0092867407011968
-
F. Gofflot, N. Chartoire, L. Vasseur, S. Heikkinen, D. Dembele, J. Le Merrer, and J. Auwerx Systematic gene expression mapping clusters nuclear receptors according to their function in the brain Cell 131 2007 405 418 (Pubitemid 47576140)
-
(2007)
Cell
, vol.131
, Issue.2
, pp. 405-418
-
-
Gofflot, F.1
Chartoire, N.2
Vasseur, L.3
Heikkinen, S.4
Dembele, D.5
Le Merrer, J.6
Auwerx, J.7
-
23
-
-
0026693222
-
Identification of a fat cell enhancer: Analysis of requirements for adipose tissue-specific gene expression
-
R.A. Graves, P. Tontonoz, K.A. Platt, S.R. Ross, and B.M. Spiegelman Identification of a fat cell enhancer: analysis of requirements for adipose tissue-specific gene expression J. Cell. Biochem. 49 1992 219 224
-
(1992)
J. Cell. Biochem.
, vol.49
, pp. 219-224
-
-
Graves, R.A.1
Tontonoz, P.2
Platt, K.A.3
Ross, S.R.4
Spiegelman, B.M.5
-
24
-
-
19944401504
-
Mouse brain organization revealed through direct genome-scale TF expression analysis
-
DOI 10.1126/science.1104935
-
P.A. Gray, H. Fu, P. Luo, Q. Zhao, J. Yu, A. Ferrari, T. Tenzen, D.I. Yuk, E.F. Tsung, and Z. Cai Mouse brain organization revealed through direct genome-scale TF expression analysis Science 306 2004 2255 2257 (Pubitemid 40024462)
-
(2004)
Science
, vol.306
, Issue.5705
, pp. 2255-2257
-
-
Gray, P.A.1
Fu, H.2
Luo, P.3
Zhao, Q.4
Yu, J.5
Ferrari, A.6
Tenzen, T.7
Yuk, D.-I.8
Tsung, E.F.9
Cai, Z.10
Alberta, J.A.11
Cheng, L.-P.12
Liu, Y.13
Stenman, J.M.14
Valerius, M.T.15
Billings, N.16
Kim, H.A.17
Greenberg, M.E.18
McMahon, A.P.19
Rowitch, D.H.20
Stiles, C.D.21
Ma, Q.22
more..
-
25
-
-
23744439083
-
Loss of ARNT/HIF1β mediates altered gene expression and pancreatic-islet dysfunction in human type 2 diabetes
-
DOI 10.1016/j.cell.2005.05.027, PII S0092867405005416
-
J.E. Gunton, R.N. Kulkarni, S. Yim, T. Okada, W.J. Hawthorne, Y.H. Tseng, R.S. Roberson, C. Ricordi, P.J. O'Connell, and F.J. Gonzalez Loss of ARNT/HIF1beta mediates altered gene expression and pancreatic-islet dysfunction in human type 2 diabetes Cell 122 2005 337 349 (Pubitemid 41127137)
-
(2005)
Cell
, vol.122
, Issue.3
, pp. 337-349
-
-
Gunton, J.E.1
Kulkarni, R.N.2
Yim, S.3
Okada, T.4
Hawthorne, W.J.5
Tseng, Y.-H.6
Roberson, R.S.7
Ricordi, C.8
O'Connell, P.J.9
Gonzalez, F.J.10
Kahn, C.R.11
-
26
-
-
77950081353
-
Transcriptional control of preadipocyte determination by Zfp423
-
R.K. Gupta, Z. Arany, P. Seale, R.J. Mepani, L. Ye, H.M. Conroe, Y.A. Roby, H. Kulaga, R.R. Reed, and B.M. Spiegelman Transcriptional control of preadipocyte determination by Zfp423 Nature 464 2010 619 623
-
(2010)
Nature
, vol.464
, pp. 619-623
-
-
Gupta, R.K.1
Arany, Z.2
Seale, P.3
Mepani, R.J.4
Ye, L.5
Conroe, H.M.6
Roby, Y.A.7
Kulaga, H.8
Reed, R.R.9
Spiegelman, B.M.10
-
27
-
-
63849308888
-
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
-
J.R. Hesselberth, X. Chen, Z. Zhang, P.J. Sabo, R. Sandstrom, A.P. Reynolds, R.E. Thurman, S. Neph, M.S. Kuehn, and W.S. Noble Global mapping of protein-DNA interactions in vivo by digital genomic footprinting Nat. Methods 6 2009 283 289
-
(2009)
Nat. Methods
, vol.6
, pp. 283-289
-
-
Hesselberth, J.R.1
Chen, X.2
Zhang, Z.3
Sabo, P.J.4
Sandstrom, R.5
Reynolds, A.P.6
Thurman, R.E.7
Neph, S.8
Kuehn, M.S.9
Noble, W.S.10
-
28
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
P.V. Kharchenko, A.A. Alekseyenko, Y.B. Schwartz, A. Minoda, N.C. Riddle, J. Ernst, P.J. Sabo, E. Larschan, A.A. Gorchakov, and T. Gu Comprehensive analysis of the chromatin landscape in Drosophila melanogaster Nature 471 2011 480 485
-
(2011)
Nature
, vol.471
, pp. 480-485
-
-
Kharchenko, P.V.1
Alekseyenko, A.A.2
Schwartz, Y.B.3
Minoda, A.4
Riddle, N.C.5
Ernst, J.6
Sabo, P.J.7
Larschan, E.8
Gorchakov, A.A.9
Gu, T.10
-
29
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
T.K. Kim, M. Hemberg, J.M. Gray, A.M. Costa, D.M. Bear, J. Wu, D.A. Harmin, M. Laptewicz, K. Barbara-Haley, and S. Kuersten Widespread transcription at neuronal activity-regulated enhancers Nature 465 2010 182 187
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
-
30
-
-
0034020814
-
Understanding 'active' chromatin: A historical perspective of chromatin remodeling
-
J.E. Krebs, and C.L. Peterson Understanding "active" chromatin: a historical perspective of chromatin remodeling Crit. Rev. Eukaryot. Gene Expr. 10 2000 1 12 (Pubitemid 30266170)
-
(2000)
Critical Reviews in Eukaryotic Gene Expression
, vol.10
, Issue.1
, pp. 1-12
-
-
Krebs, J.E.1
Peterson, C.L.2
-
31
-
-
55749095056
-
PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale
-
M.I. Lefterova, Y. Zhang, D.J. Steger, M. Schupp, J. Schug, A. Cristancho, D. Feng, D. Zhuo, C.J. Stoeckert Jr., and X.S. Liu PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale Genes Dev. 22 2008 2941 2952
-
(2008)
Genes Dev.
, vol.22
, pp. 2941-2952
-
-
Lefterova, M.I.1
Zhang, Y.2
Steger, D.J.3
Schupp, M.4
Schug, J.5
Cristancho, A.6
Feng, D.7
Zhuo, D.8
Stoeckert Jr., C.J.9
Liu, X.S.10
-
32
-
-
77950634721
-
Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages
-
M.I. Lefterova, D.J. Steger, D. Zhuo, M. Qatanani, S.E. Mullican, G. Tuteja, E. Manduchi, G.R. Grant, and M.A. Lazar Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages Mol. Cell. Biol. 30 2010 2078 2089
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 2078-2089
-
-
Lefterova, M.I.1
Steger, D.J.2
Zhuo, D.3
Qatanani, M.4
Mullican, S.E.5
Tuteja, G.6
Manduchi, E.7
Grant, G.R.8
Lazar, M.A.9
-
33
-
-
77957220857
-
Comparative epigenomic analysis of murine and human adipogenesis
-
T.S. Mikkelsen, Z. Xu, X. Zhang, L. Wang, J.M. Gimble, E.S. Lander, and E.D. Rosen Comparative epigenomic analysis of murine and human adipogenesis Cell 143 2010 156 169
-
(2010)
Cell
, vol.143
, pp. 156-169
-
-
Mikkelsen, T.S.1
Xu, Z.2
Zhang, X.3
Wang, L.4
Gimble, J.M.5
Lander, E.S.6
Rosen, E.D.7
-
34
-
-
79955550445
-
A user's guide to the encyclopedia of DNA elements (ENCODE)
-
10.1371/journal.pbio.1001046
-
R.M. Myers, J. Stamatoyannopoulos, M. Snyder, I. Dunham, R.C. Hardison, B.E. Bernstein, T.R. Gingeras, W.J. Kent, E. Birney, and B. Wold A user's guide to the encyclopedia of DNA elements (ENCODE) PLoS Biol. 9 2011 e1001046 10.1371/journal.pbio.1001046
-
(2011)
PLoS Biol.
, vol.9
, pp. 1001046
-
-
Myers, R.M.1
Stamatoyannopoulos, J.2
Snyder, M.3
Dunham, I.4
Hardison, R.C.5
Bernstein, B.E.6
Gingeras, T.R.7
Kent, W.J.8
Birney, E.9
Wold, B.10
-
35
-
-
55749101777
-
Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis
-
R. Nielsen, T.A. Pedersen, D. Hagenbeek, P. Moulos, R. Siersbaek, E. Megens, S. Denissov, M. Borgesen, K.J. Francoijs, and S. Mandrup Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis Genes Dev. 22 2008 2953 2967
-
(2008)
Genes Dev.
, vol.22
, pp. 2953-2967
-
-
Nielsen, R.1
Pedersen, T.A.2
Hagenbeek, D.3
Moulos, P.4
Siersbaek, R.5
Megens, E.6
Denissov, S.7
Borgesen, M.8
Francoijs, K.J.9
Mandrup, S.10
-
36
-
-
33746361200
-
Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
-
DOI 10.1186/1471-2105-7-276
-
M.J. Okoniewski, and C.J. Miller Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations BMC Bioinformatics 7 2006 276 10.1186/1471-2105-7-276 (Pubitemid 44110471)
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 276
-
-
Okoniewski, M.J.1
Miller, C.J.2
-
37
-
-
78751570979
-
RNA sequencing: Advances, challenges and opportunities
-
F. Ozsolak, and P.M. Milos RNA sequencing: advances, challenges and opportunities Nat. Rev. Genet. 12 2011 87 98
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.M.2
-
38
-
-
79952266465
-
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
-
R. Pique-Regi, J.F. Degner, A.A. Pai, D.J. Gaffney, Y. Gilad, and J.K. Pritchard Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data Genome Res. 21 2011 447 455
-
(2011)
Genome Res.
, vol.21
, pp. 447-455
-
-
Pique-Regi, R.1
Degner, J.F.2
Pai, A.A.3
Gaffney, D.J.4
Gilad, Y.5
Pritchard, J.K.6
-
39
-
-
78650750309
-
PGC-1alpha regulates a HIF2alpha-dependent switch in skeletal muscle fiber types
-
K.A. Rasbach, R.K. Gupta, J.L. Ruas, J. Wu, E. Naseri, J.L. Estall, and B.M. Spiegelman PGC-1alpha regulates a HIF2alpha-dependent switch in skeletal muscle fiber types Proc. Natl. Acad. Sci. USA 107 2010 21866 21871
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21866-21871
-
-
Rasbach, K.A.1
Gupta, R.K.2
Ruas, J.L.3
Wu, J.4
Naseri, E.5
Estall, J.L.6
Spiegelman, B.M.7
-
40
-
-
77953062527
-
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
-
D. Schmidt, M.D. Wilson, B. Ballester, P.C. Schwalie, G.D. Brown, A. Marshall, C. Kutter, S. Watt, C.P. Martinez-Jimenez, and S. Mackay Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding Science 328 2010 1036 1040
-
(2010)
Science
, vol.328
, pp. 1036-1040
-
-
Schmidt, D.1
Wilson, M.D.2
Ballester, B.3
Schwalie, P.C.4
Brown, G.D.5
Marshall, A.6
Kutter, C.7
Watt, S.8
Martinez-Jimenez, C.P.9
MacKay, S.10
-
41
-
-
79952700353
-
Cross species comparison of C/EBPalpha and PPARgamma profiles in mouse and human adipocytes reveals interdependent retention of binding sites
-
10.1186/1471-2164-12-152
-
S.F. Schmidt, M. Jorgensen, Y. Chen, R. Nielsen, A. Sandelin, and S. Mandrup Cross species comparison of C/EBPalpha and PPARgamma profiles in mouse and human adipocytes reveals interdependent retention of binding sites BMC Genomics 12 2011 152 10.1186/1471-2164-12-152
-
(2011)
BMC Genomics
, vol.12
, pp. 152
-
-
Schmidt, S.F.1
Jorgensen, M.2
Chen, Y.3
Nielsen, R.4
Sandelin, A.5
Mandrup, S.6
-
42
-
-
39449088572
-
Genome-wide approaches to studying chromatin modifications
-
DOI 10.1038/nrg2270, PII NRG2270
-
D.E. Schones, and K. Zhao Genome-wide approaches to studying chromatin modifications Nat. Rev. Genet. 9 2008 179 191 (Pubitemid 351271798)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.3
, pp. 179-191
-
-
Schones, D.E.1
Zhao, K.2
-
43
-
-
0034664770
-
Pax7 is required for the specification of myogenic satellite cells
-
P. Seale, L.A. Sabourin, A. Girgis-Gabardo, A. Mansouri, P. Gruss, and M.A. Rudnicki Pax7 is required for the specification of myogenic satellite cells Cell 102 2000 777 786
-
(2000)
Cell
, vol.102
, pp. 777-786
-
-
Seale, P.1
Sabourin, L.A.2
Girgis-Gabardo, A.3
Mansouri, A.4
Gruss, P.5
Rudnicki, M.A.6
-
44
-
-
34347326271
-
Transcriptional Control of Brown Fat Determination by PRDM16
-
DOI 10.1016/j.cmet.2007.06.001, PII S155041310700157X
-
P. Seale, S. Kajimura, W. Yang, S. Chin, L.M. Rohas, M. Uldry, G. Tavernier, D. Langin, and B.M. Spiegelman Transcriptional control of brown fat determination by PRDM16 Cell Metab. 6 2007 38 54 (Pubitemid 47008902)
-
(2007)
Cell Metabolism
, vol.6
, Issue.1
, pp. 38-54
-
-
Seale, P.1
Kajimura, S.2
Yang, W.3
Chin, S.4
Rohas, L.M.5
Uldry, M.6
Tavernier, G.7
Langin, D.8
Spiegelman, B.M.9
-
45
-
-
79954992662
-
Extensive chromatin remodelling and establishment of transcription factor "hotspots" during early adipogenesis
-
R. Siersbaek, R. Nielsen, S. John, M.H. Sung, S. Baek, A. Loft, G.L. Hager, and S. Mandrup Extensive chromatin remodelling and establishment of transcription factor "hotspots" during early adipogenesis EMBO J. 30 2011 1459 1472
-
(2011)
EMBO J.
, vol.30
, pp. 1459-1472
-
-
Siersbaek, R.1
Nielsen, R.2
John, S.3
Sung, M.H.4
Baek, S.5
Loft, A.6
Hager, G.L.7
Mandrup, S.8
-
46
-
-
76749108047
-
Rfx6 directs islet formation and insulin production in mice and humans
-
S.B. Smith, H.Q. Qu, N. Taleb, N.Y. Kishimoto, D.W. Scheel, Y. Lu, A.M. Patch, R. Grabs, J. Wang, and F.C. Lynn Rfx6 directs islet formation and insulin production in mice and humans Nature 463 2010 775 780
-
(2010)
Nature
, vol.463
, pp. 775-780
-
-
Smith, S.B.1
Qu, H.Q.2
Taleb, N.3
Kishimoto, N.Y.4
Scheel, D.W.5
Lu, Y.6
Patch, A.M.7
Grabs, R.8
Wang, J.9
Lynn, F.C.10
-
47
-
-
79953756730
-
Species-specific strategies underlying conserved functions of metabolic transcription factors
-
R.E. Soccio, G. Tuteja, L.J. Everett, Z. Li, M.A. Lazar, and K.H. Kaestner Species-specific strategies underlying conserved functions of metabolic transcription factors Mol. Endocrinol. 25 2011 694 706
-
(2011)
Mol. Endocrinol.
, vol.25
, pp. 694-706
-
-
Soccio, R.E.1
Tuteja, G.2
Everett, L.J.3
Li, Z.4
Lazar, M.A.5
Kaestner, K.H.6
-
48
-
-
73649093422
-
Rfx6 is an Ngn3-dependent winged helix transcription factor required for pancreatic islet cell development
-
J. Soyer, L. Flasse, W. Raffelsberger, A. Beucher, C. Orvain, B. Peers, P. Ravassard, J. Vermot, M.L. Voz, and G. Mellitzer Rfx6 is an Ngn3-dependent winged helix transcription factor required for pancreatic islet cell development Development 137 2010 203 212
-
(2010)
Development
, vol.137
, pp. 203-212
-
-
Soyer, J.1
Flasse, L.2
Raffelsberger, W.3
Beucher, A.4
Orvain, C.5
Peers, B.6
Ravassard, P.7
Vermot, J.8
Voz, M.L.9
Mellitzer, G.10
-
49
-
-
77952331646
-
Propagation of adipogenic signals through an epigenomic transition state
-
D.J. Steger, G.R. Grant, M. Schupp, T. Tomaru, M.I. Lefterova, J. Schug, E. Manduchi, C.J. Stoeckert Jr., and M.A. Lazar Propagation of adipogenic signals through an epigenomic transition state Genes Dev. 24 2010 1035 1044
-
(2010)
Genes Dev.
, vol.24
, pp. 1035-1044
-
-
Steger, D.J.1
Grant, G.R.2
Schupp, M.3
Tomaru, T.4
Lefterova, M.I.5
Schug, J.6
Manduchi, E.7
Stoeckert Jr., C.J.8
Lazar, M.A.9
-
50
-
-
78049446282
-
Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci
-
M.L. Stitzel, P. Sethupathy, D.S. Pearson, P.S. Chines, L. Song, M.R. Erdos, R. Welch, S.C. Parker, A.P. Boyle, and L.J. Scott Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci Cell Metab. 12 2010 443 455
-
(2010)
Cell Metab.
, vol.12
, pp. 443-455
-
-
Stitzel, M.L.1
Sethupathy, P.2
Pearson, D.S.3
Chines, P.S.4
Song, L.5
Erdos, M.R.6
Welch, R.7
Parker, S.C.8
Boyle, A.P.9
Scott, L.J.10
-
51
-
-
77957666255
-
Histone methyl transferases and demethylases; Can they link metabolism and transcription?
-
R. Teperino, K. Schoonjans, and J. Auwerx Histone methyl transferases and demethylases; can they link metabolism and transcription? Cell Metab. 12 2010 321 327
-
(2010)
Cell Metab.
, vol.12
, pp. 321-327
-
-
Teperino, R.1
Schoonjans, K.2
Auwerx, J.3
-
52
-
-
0028641559
-
Stimulation of adipogenesis in fibroblasts by PPAR gamma 2, a lipid- activated transcription factor
-
P. Tontonoz, E. Hu, and B.M. Spiegelman Stimulation of adipogenesis in fibroblasts by PPAR gamma 2, a lipid- activated transcription factor Cell 79 1994 1147 1156
-
(1994)
Cell
, vol.79
, pp. 1147-1156
-
-
Tontonoz, P.1
Hu, E.2
Spiegelman, B.M.3
-
53
-
-
2942726155
-
The ins and outs of FoxO shuttling: Mechanisms of FoxO translocation and transcriptional regulation
-
DOI 10.1042/BJ20040167
-
L.P. Van Der Heide, M.F. Hoekman, and M.P. Smidt The ins and outs of FoxO shuttling: mechanisms of FoxO translocation and transcriptional regulation Biochem. J. 380 2004 297 309 (Pubitemid 38788101)
-
(2004)
Biochemical Journal
, vol.380
, Issue.2
, pp. 297-309
-
-
Van Der Heide, L.P.1
Hoekman, M.F.M.2
Smidt, M.P.3
-
54
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Z. Wang, M. Gerstein, and M. Snyder RNA-Seq: a revolutionary tool for transcriptomics Nat. Rev. Genet. 10 2009 57 63
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
55
-
-
79959198166
-
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
-
D. Wang, I. Garcia-Bassets, C. Benner, W. Li, X. Su, Y. Zhou, J. Qiu, W. Liu, M.U. Kaikkonen, and K.A. Ohgi Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA Nature 474 2011 390 394
-
(2011)
Nature
, vol.474
, pp. 390-394
-
-
Wang, D.1
Garcia-Bassets, I.2
Benner, C.3
Li, W.4
Su, X.5
Zhou, Y.6
Qiu, J.7
Liu, W.8
Kaikkonen, M.U.9
Ohgi, K.A.10
-
56
-
-
80052861419
-
Fasting of 3-day-old chicks leads to changes in histone H3 methylation status
-
P. Xu, C.J. Denbow, N. Meiri, and D.M. Denbow Fasting of 3-day-old chicks leads to changes in histone H3 methylation status Physiol. Behav. 105 2011 276 282
-
(2011)
Physiol. Behav.
, vol.105
, pp. 276-282
-
-
Xu, P.1
Denbow, C.J.2
Meiri, N.3
Denbow, D.M.4
-
57
-
-
34250893048
-
A Multipotent Progenitor Domain Guides Pancreatic Organogenesis
-
DOI 10.1016/j.devcel.2007.06.001, PII S1534580707002316
-
Q. Zhou, A.C. Law, J. Rajagopal, W.J. Anderson, P.A. Gray, and D.A. Melton A multipotent progenitor domain guides pancreatic organogenesis Dev. Cell 13 2007 103 114 (Pubitemid 46972038)
-
(2007)
Developmental Cell
, vol.13
, Issue.1
, pp. 103-114
-
-
Zhou, Q.1
Law, A.C.2
Rajagopal, J.3
Anderson, W.J.4
Gray, P.A.5
Melton, D.A.6
|