Lytic myophage Abp53 encodes several proteins similar to those encoded by host Acinetobacter baumannii and phage phiKO2

Applied and Environmental Microbiology

Volumn 77, Issue 19, 2011, Pages 6755-6762

  Lee, Chia Ni ^a   Tseng, Tsai Tien ^b   Lin, Juey Wen ^a   Fu, Yung Chieh ^a   Weng, Shu Fen ^a   Tseng, Yi Hsiung ^c  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b CLARK ATLANTA UNIVERSITY   (United States)

^c TZU CHI UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ACINETOBACTERS; BAUMANNII; BURST SIZE; CAPSID PROTEINS; DOUBLE STRANDED DNA; ENCODED PROTEINS; FIBER PROTEIN; HORIZONTAL GENE TRANSFER; HYPOTHETICAL PROTEIN; INFECTED CELLS; KLEBSIELLA; NOSOCOMIAL INFECTION; OPEN READING FRAME; PHAGE THERAPY; SDS-POLYACRYLAMIDE GEL ELECTROPHORESIS; SEQUENCE ANALYSIS; SPUTUM SAMPLES;

ADSORPTION; AMINO ACIDS; ELECTROPHORESIS; GENE TRANSFER; GENES;

PROTEINS;

MAGNESIUM; VIRUS DNA; VIRUS PROTEIN;

BACTERIOPHAGE; BACTERIUM; BIOTECHNOLOGY; DISEASE TREATMENT; DRUG RESISTANCE; ELECTROKINESIS; EVOLUTIONARY BIOLOGY; GENE EXPRESSION; HOST RANGE; LYSIS; PROTEIN;

ACINETOBACTER BAUMANNII; ARTICLE; BACTERIOLYSIS; BACTERIOPHAGE; CHEMISTRY; DNA SEQUENCE; DRUG EFFECT; GENETICS; GROWTH, DEVELOPMENT AND AGING; HUMAN; ISOLATION AND PURIFICATION; KLEBSIELLA; METABOLISM; MOLECULAR GENETICS; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYACRYLAMIDE GEL ELECTROPHORESIS; SEQUENCE HOMOLOGY; SPUTUM; ULTRASTRUCTURE; VIRION; VIROLOGY; VIRUS ATTACHMENT;

ACINETOBACTER BAUMANNII; BACTERIOLYSIS; BACTERIOPHAGES; DNA, VIRAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HUMANS; KLEBSIELLA; MAGNESIUM; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; MYOVIRIDAE; OPEN READING FRAMES; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SPUTUM; VIRAL PROTEINS; VIRION; VIRUS ATTACHMENT;

EID: 82955221741     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05116-11     Document Type: Article

References (61)

1. Ackermann, H. W. 2003. Bacteriophage observations and evolution. Res. Microbiol. 154:245-251.
2. Ackermann, H. W. 2001. Frequency of morphological phage descriptions in the year 2000. Arch. Virol. 146:843-857.
3. Altschul, S. F., et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
4. Anstey, N. M., et al. 2002. Community-acquired bacteremic Acinetobacter pneumonia in tropical Australia is caused by diverse strains of Acinetobacter baumannii, with carriage in the throat in at-risk groups. J. Clin. Microbiol. 40:685-686.
5. Beck-Sague, C. M., and W. R. Jarvis. 1989. Epidemic bloodstream infections associated with pressure transducers: a persistent problem. Infect. Control Hosp. Epidemiol. 10:54-59.
6. Berkane, E., et al. 2006. Interaction of bacteriophage lambda with its cell surface receptor: an in vitro study of binding of the viral tail protein gpJ to LamB (maltoporin). Biochemistry 45:2708-2720.
7. Bou, G., G. Cervero, M. A. Dominguez, C. Quereda, and J. Martinez-Beltran. 2000. Characterization of a nosocomial outbreak caused by a multiresistant Acinetobacter baumannii strain with a carbapenem-hydrolyzing enzyme: high-level carbapenem resistance in A. baumannii is not due solely to the presence of beta-lactamases. J. Clin. Microbiol. 38:3299-3305.
8. Bouvet, P. J., S. Jeanjean, J. F. Vieu, and L. Dijkshoorn. 1990. Species, biotype, and bacteriophage type determinations compared with cell envelope protein profiles for typing Acinetobacter strains. J. Clin. Microbiol. 28:170-176.
9. Casjens, S. R., et al. 2004. The pKO2 linear plasmid prophage of Klebsiella oxytoca. J. Bacteriol. 186:1818-1832.
10. Center for Disease Control. 2008. Annual report of nosocomial infections surveillance system. Center for Disease Control, Taipei, Taiwan.
11. Chang, H. C., et al. 2005. Isolation and characterization of novel giant Stenotrophomonas maltophilia phage phiSMA5. Appl. Environ. Microbiol. 71:1387-1393.
12. Chang, W. H., M. C. Lee, M. T. Yang, and Y. H. Tseng. 2005. Expression of heat-shock genes groESL in Xanthomonas campestris is upregulated by CLP in an indirect manner. FEMS Microbiol. Lett. 243:365-372.
13. Chiou, C. S., et al. 2006. Molecular epidemiology and emergence of worldwide epidemic clones of Neisseria meningitidis in Taiwan. BMC Infect. Dis. 6:25-32.
14. Chow, L. T., L. Boice, and N. Davidson. 1972. Map of the partial sequence homology between DNA molecules of Bacillus subtilis bacteriophages SPO2 and phi105. J. Mol. Biol. 68:391-400.
15. Crothers-Stomps, C., L. Hoj, D. G. Bourne, M. R. Hall, and L. Owens. 2010. Isolation of lytic bacteriophage against Vibrio harveyi. J. Appl. Microbiol. 108:1744-1750.
16. Davis, K. A., K. A. Moran, C. K. McAllister, and P. J. Gray. 2005. Multidrugresistant Acinetobacter extremity infections in soldiers. Emerg. Infect. Dis. 11:1218-1224.
17. Douglas, S. E. 1994. DNA Strider. A Macintosh program for handling protein and nucleic acid sequences. Methods Mol. Biol. 25:181-194.
18. Elston, J. W., C. L. Bannan, D. T. Chih, and C. S. Boutlis. 2008. Acinetobacter spp. in gunshot injuries. Emerg. Infect. Dis. 14:178-180.
19. Fass, R. J., and J. Barnishan. 1979. Minimal inhibitory concentrations of 34 antimicrobial agents for control strains Escherichia coli ATCC 25922 and Pseudomonas aeruginosa ATCC 27853. Antimicrob. Agents Chemother. 16: 622-624.
20. Foschino, R., F. Perrone, and A. Galli. 1995. Characterization of two virulent Lactobacillus fermentum bacteriophage isolated from sour dough. J. Appl. Bacteriol. 79:677-683.
21. Giammanco, A., J. F. Vieu, P. J. Bouvet, A. Sarzana, and A. Sinatra. 1989. A comparative assay of epidemiological markers for Acinetobacter strains isolated in a hospital. Zentralbl. Bakteriol. 272:231-241.
22. Goodridge, L. D. 2010. Designing phage therapeutics. Curr. Pharm. Biotechnol. 11:15-27.
23. Greer, G. G. 2005. Bacteriophage control of foodborne bacteria. J. Food. Prot. 68:1102-1111.
24. He, C., et al. 2011. Increasing imipenem resistance and dissemination of the ISAba1 associated blaOXA-23 gene among Acinetobacter baumannii isolates in an intensive care unit. J. Med. Microbiol. 60:337-341.
25. Hsueh, P. R., et al. 2002. Pandrug-resistant Acinetobacter baumannii causing nosocomial infections in a university hospital, Taiwan. Emerg. Infect. Dis. 8:827-832.
26. Inoue, Y., T. Matsuura, and T. Ohara. 2006. Bacteriophage OP1, lytic for Xanthomonas oryzae pv. oryzae, changes its host range by duplication and deletion of the small in the deduced tail fiber gene. J. Gen. Plant Pathol. 72:111-118.
27. Joly-Guillou, M. L., E. Bergogne-Berezin, and J. F. Vieu. 1990. A study of the relationships between antibiotic resistance phenotypes, phage-typing and biotyping of 117 clinical isolates of Acinetobacter spp. J. Hosp. Infect. 16:49-58.
28. Lee, C. N., J. W. Lin, T. Y. Chow, Y. H. Tseng, and S. F. Weng. 2006. A novel lysozyme from Xanthomonas oryzae phage phiXo411 active against Xanthomonas and Stenotrophomonas. Protein Expr. Purif. 50:229-237.
29. Lee, C. N., J. W. Lin, S. F. Weng, and Y. H. Tseng. 2009. Genomic characterization of the intron-containing T7-like phage phiL7 of Xanthomonas campestris. Appl. Environ. Microbiol. 75:7828-7837.
30. Lin, N. T., P. Y. Chiou, K. C. Chang, L. K. Chen, and M. J. Lai. 2010. Isolation and characterization of φ{symbol}AB2: a novel bacteriophage of Acinetobacter baumannii. Res. Microbiol. 161:308-314.
31. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
32. Murray, C. K., and D. R. Hospenthal. 2008. Acinetobacter infection in the ICU. Crit. Care Clin. 24:237-248, vii.
33. Pajunen, M., S. Kiljunen, and M. Skurnik. 2000. Bacteriophage phiYeO3-12, specific for Yersinia enterocolitica serotype O:3, is related to coliphages T3 and T7. J. Bacteriol. 182:5114-5120.
34. Perez, F., et al. 2007. Global challenge of multidrug-resistant Acinetobacter baumannii. Antimicrob. Agents Chemother. 51:3471-3484.
35. Pirisi, A. 2000. Phage therapy-advantages over antibiotics? Lancet 356: 1418.
36. Qi, C., M. Malczynski, M. Parker, and M. H. Scheetz. 2008. Characterization of genetic diversity of carbapenem-resistant Acinetobacter baumannii clinical strains collected from 2004 to 2007. J. Clin. Microbiol. 46:1106-1109.
37. Reese, J. F., G. Dimitracopoulos, and P. F. Bartell. 1974. Factors influencing the adsorption of bacteriophage 2 to cells of Pseudomonas aeruginosa. J. Virol. 13:22-27.
38. Rountree, P. M. 1955. The role of divalent cations in the multiplication of Staphylococcal bacteriophages. J. Gen. Microbiol. 12:275-287.
39. Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
40. Seifert, H., A. Schulze, R. Baginski, and G. Pulverer. 1994. Comparison of four different methods for epidemiologic typing of Acinetobacter baumannii. J. Clin. Microbiol. 32:1816-1819.
41. Smith, M. G., et al. 2007. New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis. Genes Dev. 21:601-614.
42. Snipes, W., J. Cupp, J. A. Sands, A. Keith, and A. Davis. 1974. Calcium requirement for assembly of the lipid-containing bacteriophage PM2. Biochim. Biophys. Acta 339:311-322.
43. Soothill, J. S. 1994. Bacteriophage prevents destruction of skin grafts by Pseudomonas aeruginosa. Burns 20:209-211.
44. Soothill, J. S. 1992. Treatment of experimental infections of mice with bacteriophages. J. Med. Microbiol. 37:258-261.
45. Steensma, H. Y., and J. Blok. 1979. Effect of calcium ions on the infection of Bacillus subtilis by bacteriophage SF 6. J. Gen. Virol. 42:305-314.
46. Sulakvelidze, A. 2005. Phage therapy: an attractive option for dealing with antibiotic-resistant bacterial infections. Drug Discov. Today 10:807-809.
47. Sulakvelidze, A., Z. Alavidze, and J. G. Morris, Jr. 2001. Bacteriophage therapy. Antimicrob. Agents Chemother. 45:649-659.
48. Taylor, R. G., D. C. Walker, and R. R. McInnes. 1993. E. coli host strains significantly affect the quality of small scale plasmid DNA preparations used for sequencing. Nucleic Acids Res. 21:1677-1678.
49. Tetart, F., et al. 2001. Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages. J. Bacteriol. 183:358-366.
50. Tetart, F., F. Repoila, C. Monod, and H. M. Krisch. 1996. Bacteriophage T4 host range is expanded by duplications of a small domain of the tail fiber adhesin. J. Mol. Biol. 258:726-731.
51. Topley, W. W. C., and G. S. Wilson. 1929. The principles of bacteriology and immunity, p. 224-233. Willian Wood & Company, New York, NY.
52. Towner, K. J. 2009. Acinetobacter: an old friend, but a new enemy. J. Hosp. Infect. 73:355-363.
53. Tseng, Y. H., et al. 1999. Chromosome map of Xanthomonas campestris pv. campestris 17 with locations of genes involved in xanthan gum synthesis and yellow pigmentation. J. Bacteriol. 181:117-125.
54. Tucker, R. G. 1961. The role of magnesium ions in the growth of Salmonella phage anti-R. J. Gen. Microbiol. 26:313-323.
55. Villari, P., L. Iacuzio, E. A. Vozzella, and U. Bosco. 1999. Unusual genetic heterogeneity of Acinetobacter baumannii isolates in a university hospital in Italy. Am. J. Infect. Control 27:247-253.
56. Watanabe, K., and S. Takesue. 1972. The requirement for calcium in infection with Lactobacillus phage. J. Gen. Virol. 17:19-30.
57. Wisplinghoff, H., et al. 2000. Nosocomial bloodstream infections caused by Acinetobacter species in United States hospitals: clinical features, molecular epidemiology, and antimicrobial susceptibility. Clin. Infect. Dis. 31:690-697.
58. Wu, L. T., S. Y. Chang, M. R. Yen, T. C. Yang, and Y. H. Tseng. 2007. Characterization of extended-host-range pseudo-T-even bacteriophage Kpp95 isolated on Klebsiella pneumoniae. Appl. Environ. Microbiol. 73: 2532-2540.
59. Yang, H., L. Liang, S. Lin, and S. Jia. 2010. Isolation and characterization of a virulent bacteriophage AB1 of Acinetobacter baumannii. BMC Microbiol. 10:131-140.
60. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
61. Yuji, K., G. Oiso, T. Matsumura, N. Murashige, and M. Kami. Police investigation into multidrug-resistant Acinetobacter baumannii outbreak in Japan. Clin. Infect. Dis. 52:422.