Functional magnetic resonance imaging of awake monkeys: Some approaches for improving imaging quality

Magnetic Resonance Imaging

Volumn 30, Issue 1, 2012, Pages 36-47

  Chen, Gang ^a,b   Wang, Feng ^a,b   Dillenburger, Barbara C ^a,b,e   Friedman, Robert M ^a   Chen, Li M ^a,b   Gore, John C ^a,b,c,d   Avison, Malcolm J ^a,b   Roe, Anna W ^a,b,c  

^a VANDERBILT UNIVERSITY   (United States)

^b VANDERBILT UNIVERSITY   (United States)

^c VANDERBILT UNIVERSITY   (United States)

^d VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e MAX PLANCK INSTITUTE FOR NEUROLOGICAL RESEARCH   (Germany)

Author keywords

Awake; Data stability; Functional MRI; Macaque monkey; Nonhuman primate; Visual cortex

Indexed keywords

ARTICLE; ARTIFACT; BODY MOVEMENT; BOLD SIGNAL; ECHO PLANAR IMAGING; FUNCTIONAL MAGNETIC RESONANCE IMAGING; GEOMETRY; HAPLORHINI; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE QUALITY; MAGNETIC FIELD; NEUROIMAGING; NONHUMAN; PRIORITY JOURNAL; SIGNAL NOISE RATIO; VISUAL FIELD; VISUAL STIMULATION; WAKEFULNESS;

ALGORITHMS; ANIMALS; ARTIFACTS; BEHAVIOR CONTROL; BRAIN; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MACACA; MAGNETIC RESONANCE IMAGING; MOVEMENT; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

ANIMALIA; PRIMATES;

EID: 82955187568     PISSN: 0730725X     EISSN: 18735894     Source Type: Journal    
DOI: 10.1016/j.mri.2011.09.010     Document Type: Article

References (49)

1. Matsui T., Koyano K.W., Koyama M., Nakahara K., Takeda M., Ohashi Y., et al. MRI-based localization of electrophysiological recording sites within the cerebral cortex at single-voxel accuracy. Nat Methods 2007, 4(2):161-168.
2. Tsao D.Y., Freiwald W.A., Tootell R.B., Livingstone M.S. A cortical region consisting entirely of face-selective cells. Science (New York, NY) 2006, 311(5761):670-674.
3. Ekstrom L.B., Roelfsema P.R., Arsenault J.T., Bonmassar G., Vanduffel W. Bottom-up dependent gating of frontal signals in early visual cortex. Science (New York, NY) 2008, 321(5887):414-417.
4. Moeller S., Freiwald W.A., Tsao D.Y. Patches with links: a unified system for processing faces in the macaque temporal lobe. Science (New York, NY) 2008, 320(5881):1355-1359.
5. Pinsk M.A., Moore T., Richter M.C., Gross C.G., Kastner S. Methods for functional magnetic resonance imaging in normal and lesioned behaving monkeys. J Neurosci Methods 2005, 143(2):179-195.
6. Smirnakis S.M., Brewer A.A., Schmid M.C., Tolias A.S., Schuz A., Augath M., et al. Lack of long-term cortical reorganization after macaque retinal lesions. Nature 2005, 435(7040):300-307.
7. Schmid M.C., Mrowka S.W., Turchi J., Saunders R.C., Wilke M., Peters A.J., et al. Blindsight depends on the lateral geniculate nucleus. Nature 2010, 466(7304):373-377.
8. Felleman D.J., Van Essen D.C. Distributed hierarchical processing in the primate cerebral cortex. Cereb Cortex 1991, 1(1):1-47.
9. Ts'o D.Y., Frostig R.D., Lieke E.E., Grinvald A. Functional organization of primate visual cortex revealed by high resolution optical imaging. Science 1990, 249(4967):417-420.
10. Cheng K., Waggoner R.A., Tanaka K. Human ocular dominance columns as revealed by high-field functional magnetic resonance imaging. Neuron 2001, 32(2):359-374.
11. Yacoub E., Shmuel A., Logothetis N., Ugurbil K. Robust detection of ocular dominance columns in humans using Hahn spin echo BOLD functional MRI at 7 tesla. NeuroImage 2007, 37(4):1161-1177.
12. Dubowitz D.J., Chen D.Y., Atkinson D.J., Grieve K.L., Gillikin B., Bradley W.G., et al. Functional magnetic resonance imaging in macaque cortex. Neuroreport 1998, 9(10):2213-2218.
13. Vanduffel W., Fize D., Mandeville J.B., Nelissen K., Van Hecke P., Rosen B.R., et al. Visual motion processing investigated using contrast agent-enhanced fMRI in awake behaving monkeys. Neuron 2001, 32(4):565-577.
14. Stefanacci L., Reber P., Costanza J., Wong E., Buxton R., Zola S., et al. Albright T. fMRI of monkey visual cortex. Neuron 1998, 20(6):1051-1057.
15. Nakahara K., Hayashi T., Konishi S., Miyashita Y. Functional MRI of macaque monkeys performing a cognitive set-shifting task. Science (New York, NY) 2002, 295(5559):1532-1536.
16. Logothetis N.K., Guggenberger H., Peled S., Pauls J. Functional imaging of the monkey brain. Nat Neurosci 1999, 2(6):555-562.
17. Gamlin P.D., Ward M.K., Bolding M.S., Grossmann J.K., Twieg D.B. Developing functional magnetic resonance imaging techniques for alert macaque monkeys. Methods (San Diego, Calif) 2006, 38(3):210-220.
18. Baumann S., Griffiths T.D., Rees A., Hunter D., Sun L., Thiele A. Characterisation of the BOLD response time course at different levels of the auditory pathway in non-human primates. NeuroImage 2010, 50(3):1099-1108.
19. Keliris G.A., Shmuel A., Ku S.P., Pfeuffer J., Oeltermann A., Steudel T., et al. Robust controlled functional MRI in alert monkeys at high magnetic field: effects of jaw and body movements. NeuroImage 2007, 36(3):550-570.
20. Goense J.B., Whittingstall K., Logothetis N.K. Functional magnetic resonance imaging of awake behaving macaques. Methods (San Diego, Calif) 2010, 50(3):178-188.
21. Kolster H., Mandeville J.B., Arsenault J.T., Ekstrom L.B., Wald L.L., Vanduffel W. Visual field map clusters in macaque extrastriate visual cortex. J Neurosci 2009, 29(21):7031-7039.
22. Ford K.A., Gati J.S., Menon R.S., Everling S. BOLD fMRI activation for anti-saccades in nonhuman primates. NeuroImage 2009, 45(2):470-476.
23. Kagan I., Iyer A., Lindner A., Andersen R.A. Space representation for eye movements is more contralateral in monkeys than in humans. Proc Natl Acad Sci USA 2010, 107(17):7933-7938.
24. Koyama M., Hasegawa I., Osada T., Adachi Y., Nakahara K., Miyashita Y. Functional magnetic resonance imaging of macaque monkeys performing visually guided saccade tasks: comparison of cortical eye fields with humans. Neuron 2004, 41(5):795-807.
25. Baumann S., Griffiths T.D., Sun L., Petkov C.I., Thiele A., Rees A. Orthogonal representation of sound dimensions in the primate midbrain. Nat Neurosci 2011, 14(4):423-425.
26. Kruger G., Glover G.H. Physiological noise in oxygenation-sensitive magnetic resonance imaging. Magn Reson Med 2001, 46(4):631-637.
27. Kruger G., Kastrup A., Glover G.H. Neuroimaging at 1.5 T and 3.0 T: comparison of oxygenation-sensitive magnetic resonance imaging. Magn Reson Med 2001, 45(4):595-604.
28. Triantafyllou C., Hoge R.D., Krueger G., Wiggins C.J., Potthast A., Wiggins G.C., et al. Comparison of physiological noise at 1.5 T, 3 T and 7 T and optimization of fMRI acquisition parameters. NeuroImage 2005, 26(1):243-250.
29. Chen L.M., Turner G.H., Friedman R.M., Zhang N., Gore J.C., Roe A.W., et al. High-resolution maps of real and illusory tactile activation in primary somatosensory cortex in individual monkeys with functional magnetic resonance imaging and optical imaging. J Neurosci 2007, 27(34):9181-9191.
30. Raj D., Anderson A.W., Gore J.C. Respiratory effects in human functional magnetic resonance imaging due to bulk susceptibility changes. Phys Med Biol 2001, 46(12):3331-3340.
31. Raj D., Paley D.P., Anderson A.W., Kennan R.P., Gore J.C. A model for susceptibility artefacts from respiration in functional echo-planar magnetic resonance imaging. Phys Med Biol 2000, 45(12):3809-3820.
32. Srihasam K., Sullivan K., Savage T., Livingstone M.S. Noninvasive functional MRI in alert monkeys. NeuroImage 2010, 51(1):267-273.
33. Vnek N., Ramsden B.M., Hung C.P., Goldman-Rakic P.S., Roe A.W. Optical imaging of functional domains in the cortex of the awake and behaving monkey. Proc Natl Acad Sci USA 1999, 96(7):4057-4060.
34. Tanigawa H., Lu H.D., Roe A.W. Functional organization for color and orientation in macaque V4. Nat Neurosci 2010, 13(12):1542-1548.
35. Chen L.M., Friedman R.M., Roe A.W. Optical imaging of SI topography in anesthetized and awake squirrel monkeys. J Neurosci 2005, 25(33):7648-7659.
36. Lu H.D., Chen G., Tanigawa H., Roe A.W. A motion direction map in macaque V2. Neuron 2010, 68(5):1002-1013.
37. Pfeuffer J., Shmuel A., Keliris G.A., Steudel T., Merkle H., Logothetis N.K. Functional MR imaging in the awake monkey: effects of motion on dynamic off-resonance and processing strategies. Magn Reson Imaging 2007, 25(6):869-882.
38. Rohde G.K., Aldroubi A., Dawant B.M. The adaptive bases algorithm for intensity-based nonrigid image registration. IEEE Trans Med Imaging 2003, 22(11):1470-1479.
39. Vanduffel W., Fize D., Peuskens H., Denys K., Sunaert S., Todd J.T., et al. Extracting 3D from motion: differences in human and monkey intraparietal cortex. Science (New York, NY) 2002, 298(5592):413-415.
40. Saleem K.S., Logothetis N.K. A combined MRI and histology atlas of the rhesus monkey brain in stereotaxic coordinates 2007, Academic Press, London.
41. Toga A.W., Mazziotta J.C. Brain mapping: the methods 2002, Academic Press, New York.
42. Rajimehr R., Tootell R.B. Does retinotopy influence cortical folding in primate visual cortex?. J Neurosci 2009, 29(36):11149-11152.
43. Fize D., Vanduffel W., Nelissen K., Denys K., Chef d'Hotel C., Faugeras O., et al. The retinotopic organization of primate dorsal V4 and surrounding areas: a functional magnetic resonance imaging study in awake monkeys. J Neurosci 2003, 23(19):7395-7406.
44. Gattass R., Gross C.G., Sandell J.H. Visual topography of V2 in the macaque. J Comp Neurol 1981, 201(4):519-539.
45. McKinnon G.C. Ultrafast interleaved gradient-echo-planar imaging on a standard scanner. Magn Reson Med 1993, 30(5):609-616.
46. Logothetis N., Merkle H., Augath M., Trinath T., Ugurbil K. Ultra high-resolution fMRI in monkeys with implanted RF coils. Neuron 2002, 35(2):227-242.
47. Goense J.B., Logothetis N.K. Laminar specificity in monkey V1 using high-resolution SE-fMRI. Magn Reson Imaging 2006, 24(4):381-392.
48. Goense J.B., Ku S.P., Merkle H., Tolias A.S., Logothetis N.K. fMRI of the temporal lobe of the awake monkey at 7 T. NeuroImage 2008, 39(3):1081-1093.
49. Smirnakis S.M., Schmid M.C., Weber B., Tolias A.S., Augath M., Logothetis N.K. Spatial specificity of BOLD versus cerebral blood volume fMRI for mapping cortical organization. J Cereb Blood Flow Metab 2007, 27(6):1248-1261.