Roles of young serine-endopeptidase genes in survival and reproduction revealed rapid evolution of phenotypic effects at adult stages

Fly

Volumn 5, Issue 4, 2011, Pages 345-351

  Chen, Sidi ^a   Yang, Haiwang ^b   Krinsky, Benjamin H ^b   Zhang, Anthony ^b   Long, Manyuan ^b  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF CHICAGO   (United States)

Author keywords

Gene evolution; Natural selection; Phenotype evolution; Viability and reproduction

Indexed keywords

EID: 82855181087     PISSN: 19336934     EISSN: 19336942     Source Type: Journal    
DOI: 10.4161/fly.5.4.17808     Document Type: Article

References (22)

1. Long M, Betran E, Thornton K, Wang W. The origin of new genes: glimpses from the young and old. Nat Rev Genet 2003; 4:865-875.
2. Kaessmann H. Origins, evolution and phenotypic impact of new genes. Genome Res 2010; 20:1313-1326.
3. Yang S, Arguello JR, Li X, Ding Y, Zhou Q, Chen Y, et al. Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet 2008; 4:3.
4. Zhou Q, Zhang G, Zhang Y, Xu S, Zhao R, Zhan Z, et al. On the origin of new genes in Drosophila. Genome Res 2008; 18:1446-1455.
5. Vibranovski MD, Zhang Y, Long M. General gene movement off the X chromosome in the Drosophila genus. Genome Res 2009; 19:897-903.
6. Long M, Langley CH. Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science 1993; 260:91-95.
7. Jones CD, Begun DJ. Parallel evolution of chimeric fusion genes. Proc Natl Acad Sci USA 2005; 102:11373-1138.
8. Llopart A, Comeron JM, Brunet FG, Lachaise D, Long M. Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci USA 2002; 99:8121-8126.
9. Betran E, Thornton K, Long M. Retroposed new genes out of the X in Drosophila. Genome Res 2002; 12:1854-1859.
10. Chen S, Zhang YE, Long M. New genes in Drosophila quickly become essential. Science 2010; 330:1682-1685.
11. Ross J, Jiang H, Kanost MR, Wang Y. Serine proteases and their homologs in the Drosophila melanogaster genome: an initial analysis of sequence conservation and phylogenetic relationships. Gene 2003; 304:117-131.
12. Dietzl G, Chen D, Schnorrer F, Su KC, Barinova Y, Fellner M, et al. A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 2007; 448:151-156.
13. Linnen CR, Kingsley EP, Jensen JD, Hoekstra HE. On the origin and spread of an adaptive allele in deer mice. Science 2009; 325:1095-1098.
14. Manceau M, Domingues VS, Mallarino R, Hoekstra HE. The developmental role of Agouti in color pattern evolution. Science 2011; 331:1062-1065.
15. Emerson JJ, Kaessmann H, Betran E, Long M. Extensive gene traffic on the mammalian X chromosome. Science 2004; 303:537-540.
16. Zhang YE, Vibranovski MD, Krinsky BH, Long M. Age-dependent chromosomal distribution of malebiased genes in Drosophila. Genome Res 2010; 20:1526-1533.
17. Piao S, Song YL, Kim JH, Park SY, Park JW, Lee BL, et al. Crystal structure of a clip-domain serine protease and functional roles of the clip domains. EMBO J 2005; 24:4404-4414.
18. Walsh JB. How often do duplicated genes evolve new functions? Genetics 1995; 139:421-428.
19. Lynch M, O'Hely M, Walsh B, Force A. The probability of preservation of a newly arisen gene duplicate. Genetics 2001; 159:1789-1804.
20. Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999; 151:1531-1545.
21. Ohno S. Evolution by Gene Duplication. New York: Springer-Verlag 1970.
22. Arnold K, Bordoli L, Kopp J, Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 2006; 22:195-201.