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Volumn 18, Issue , 2012, Pages 82-90

Addressing the removal of rare species in multivariate bioassessments: The impact of methodological choices

Author keywords

Bioassessment; Community ecology; Multivariate analysis; Ordination; Procrustes analysis; Rare species; Resemblance measures

Indexed keywords

BIOASSESSMENT; COMMUNITY ECOLOGY; MULTI VARIATE ANALYSIS; ORDINATION; PROCRUSTES ANALYSIS; RARE SPECIES; RESEMBLANCE MEASURES;

EID: 82655183853     PISSN: 1470160X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolind.2011.10.008     Document Type: Article
Times cited : (126)

References (59)
  • 1
    • 33845301185 scopus 로고    scopus 로고
    • Role of rarity and taxonomic resolution in a regional and spatial analysis of stream macroinvertebrates
    • D.B. Arscott, J.K. Jackson, and E.B. Kratzer Role of rarity and taxonomic resolution in a regional and spatial analysis of stream macroinvertebrates Journal of the North American Benthological Society 25 2006 977 997
    • (2006) Journal of the North American Benthological Society , vol.25 , pp. 977-997
    • Arscott, D.B.1    Jackson, J.K.2    Kratzer, E.B.3
  • 5
    • 0001144718 scopus 로고    scopus 로고
    • Rare species are important in bioassessment (Reply to the comment by Marchant)
    • Y. Cao, and D. Williams Rare species are important in bioassessment (Reply to the comment by Marchant) Limnology and Oceanography 44 1999 1841 1842
    • (1999) Limnology and Oceanography , vol.44 , pp. 1841-1842
    • Cao, Y.1    Williams, D.2
  • 6
    • 0031743670 scopus 로고    scopus 로고
    • How important are rare species in aquatic community ecology and bioassessment?
    • Y. Cao, D. Williams, and N.E. Williams How important are rare species in aquatic community ecology and bioassessment? Limnology and Oceanography 43 1998 1403 1409
    • (1998) Limnology and Oceanography , vol.43 , pp. 1403-1409
    • Cao, Y.1    Williams, D.2    Williams, N.E.3
  • 7
    • 0033135669 scopus 로고    scopus 로고
    • Data transformation and standardization in the multivariate analysis of river water quality
    • Y. Cao, D.D. Williams, and N.E. Wiliams Data transformation and standardization in the multivariate analysis of river water quality Ecological Applications 9 1999 669 677
    • (1999) Ecological Applications , vol.9 , pp. 669-677
    • Cao, Y.1    Williams, D.D.2    Wiliams, N.E.3
  • 9
    • 0000179967 scopus 로고
    • Statistical design and analysis for a 'biological effects' study
    • K.R. Clarke, and R.H. Green Statistical design and analysis for a 'biological effects' study Marine Ecology Progress Series 46 1988 213 226
    • (1988) Marine Ecology Progress Series , vol.46 , pp. 213-226
    • Clarke, K.R.1    Green, R.H.2
  • 10
    • 33748749692 scopus 로고    scopus 로고
    • Effects of locally rare taxa on the precision and sensitivity of RIVPACS bioassessment of freshwaters
    • R.T. Clarke, and J.F. Murphy Effects of locally rare taxa on the precision and sensitivity of RIVPACS bioassessment of freshwaters Freshwater Biology 51 2006 1924 1940
    • (2006) Freshwater Biology , vol.51 , pp. 1924-1940
    • Clarke, R.T.1    Murphy, J.F.2
  • 11
    • 43349092920 scopus 로고    scopus 로고
    • Beals smoothing revisted
    • M. DeCáceres, and P. Legendre Beals smoothing revisted Oecologia 156 2008 657 669
    • (2008) Oecologia , vol.156 , pp. 657-669
    • Decáceres, M.1    Legendre, P.2
  • 13
    • 76849101482 scopus 로고    scopus 로고
    • Responses of freshwater biota to human disturbances: Contribution of J-NABS to developments in ecological integrity assessments
    • S. Dolédec, and B. Stazner Responses of freshwater biota to human disturbances: contribution of J-NABS to developments in ecological integrity assessments Journal of the North American Benthological Society 29 2010 286 311
    • (2010) Journal of the North American Benthological Society , vol.29 , pp. 286-311
    • Dolédec, S.1    Stazner, B.2
  • 14
    • 0024884715 scopus 로고
    • Correlation of environmental variables with patterns of distribution and abundance of common and rare freshwater macroinvertebrates
    • D.P. Faith, and R.H. Norris Correlation of environmental variables with patterns of distribution and abundance of common and rare freshwater macroinvertebrates Biological Conservation 50 1989 77 98
    • (1989) Biological Conservation , vol.50 , pp. 77-98
    • Faith, D.P.1    Norris, R.H.2
  • 15
    • 0003603864 scopus 로고
    • Chapman and Hall Press London
    • K.J. Gaston Rarity 1994 Chapman and Hall Press London
    • (1994) Rarity
    • Gaston, K.J.1
  • 18
    • 33747044600 scopus 로고
    • Metric and Euclidean properties of dissimilarity coefficients
    • J.C. Gower, and P. Legendre Metric and Euclidean properties of dissimilarity coefficients Journal of Classification 3 1986 5 48
    • (1986) Journal of Classification , vol.3 , pp. 5-48
    • Gower, J.C.1    Legendre, P.2
  • 20
    • 34250353977 scopus 로고    scopus 로고
    • Reconstructing community relationships: The impact of sampling error, ordination approach, and gradient length
    • C.N. Hirst, and D.A. Jackson Reconstructing community relationships: the impact of sampling error, ordination approach, and gradient length Diversity and Distributions 13 2007 361 371
    • (2007) Diversity and Distributions , vol.13 , pp. 361-371
    • Hirst, C.N.1    Jackson, D.A.2
  • 21
    • 0027800173 scopus 로고
    • Multivariate analysis of benthic invertebrate communities: The implication of choosing particular data standardizations measures of associations, and ordination methods
    • D.A. Jackson Multivariate analysis of benthic invertebrate communities: the implication of choosing particular data standardizations measures of associations, and ordination methods Hydrobiologia 268 1993 9 26
    • (1993) Hydrobiologia , vol.268 , pp. 9-26
    • Jackson, D.A.1
  • 22
    • 0027332773 scopus 로고
    • Stopping rules in principal components analysis: A comparison of heuristical and statistical approaches
    • D.A. Jackson Stopping rules in principal components analysis: a comparison of heuristical and statistical approaches Ecology 74 1993 2204 2214
    • (1993) Ecology , vol.74 , pp. 2204-2214
    • Jackson, D.A.1
  • 23
    • 0028981619 scopus 로고
    • Protest: A procrustean randomization test of community environment concordance
    • D.A. Jackson Protest: a procrustean randomization test of community environment concordance Ecoscience 2 1995 297 303
    • (1995) Ecoscience , vol.2 , pp. 297-303
    • Jackson, D.A.1
  • 24
    • 0030616851 scopus 로고    scopus 로고
    • Compositional data in community ecology: The paradigm or peril of proportions
    • D.A. Jackson Compositional data in community ecology: the paradigm or peril of proportions Ecology 78 1997 1997 929 940
    • (1997) Ecology , vol.78 , Issue.1997 , pp. 929-940
    • Jackson, D.A.1
  • 25
    • 0024880562 scopus 로고
    • Similarity coefficients - Measures of co-occurence and association or simply measures of occurrence
    • D.A. Jackson, K.M. Somers, and H.H. Harvey Similarity coefficients - measures of co-occurence and association or simply measures of occurrence American Naturalist 133 1989 436 453
    • (1989) American Naturalist , vol.133 , pp. 436-453
    • Jackson, D.A.1    Somers, K.M.2    Harvey, H.H.3
  • 26
    • 84879100573 scopus 로고    scopus 로고
    • Cluster analysis of fish community data: "new" tools for determining meaningful groupings of sites and species assemblages
    • K. Gido, D.A. Jackson, American Fisheries Society Bethesda, MD
    • D.A. Jackson, S.C. Walker, and M.S. Poos Cluster analysis of fish community data: "New" tools for determining meaningful groupings of sites and species assemblages K. Gido, D.A. Jackson, Community Ecology of Stream Fishes: Concepts, Approaches and Techniques 2010 American Fisheries Society Bethesda, MD 503 527
    • (2010) Community Ecology of Stream Fishes: Concepts, Approaches and Techniques , pp. 503-527
    • Jackson, D.A.1    Walker, S.C.2    Poos, M.S.3
  • 28
    • 0034782218 scopus 로고    scopus 로고
    • Ecologically meaningful transformations for ordination of species data
    • P. Legendre, and E.D. Gallagher Ecologically meaningful transformations for ordination of species data Oecologia 129 2001 271 280
    • (2001) Oecologia , vol.129 , pp. 271-280
    • Legendre, P.1    Gallagher, E.D.2
  • 29
    • 0004170691 scopus 로고    scopus 로고
    • 2nd ed. Elsevier Science BV Amsterdam, The Netherlands
    • P. Legendre, and L. Legendre Numerical Ecology 2nd ed. 1998 Elsevier Science BV Amsterdam, The Netherlands
    • (1998) Numerical Ecology
    • Legendre, P.1    Legendre, L.2
  • 31
    • 0025628427 scopus 로고
    • Robustness of classification and ordination techniques applied to macroinvertebrate communities from the la Trobe River, Victoria
    • R. Marchant Robustness of classification and ordination techniques applied to macroinvertebrate communities from the La Trobe River, Victoria Australian Journal of Marine and Freshwater Research 41 1990 493 504
    • (1990) Australian Journal of Marine and Freshwater Research , vol.41 , pp. 493-504
    • Marchant, R.1
  • 32
    • 0032698517 scopus 로고    scopus 로고
    • How important are rare species in aquatic community ecology and bioassessment? A comment on the conclusions of Cao et al
    • R. Marchant How important are rare species in aquatic community ecology and bioassessment? A comment on the conclusions of Cao et al. Limnology and Oceanography 44 1999 1840 1841
    • (1999) Limnology and Oceanography , vol.44 , pp. 1840-1841
    • Marchant, R.1
  • 33
    • 0036276113 scopus 로고    scopus 로고
    • Do rare species have any place in multivariate analysis for bioassessment?
    • R. Marchant Do rare species have any place in multivariate analysis for bioassessment? Journal of the North American Benthological Society 21 2002 311 313
    • (2002) Journal of the North American Benthological Society , vol.21 , pp. 311-313
    • Marchant, R.1
  • 35
    • 33749330402 scopus 로고    scopus 로고
    • Evaluation and application of methods for biological assessment of streams: Summary of papers
    • R. Marchant, R.H. Norris, and A. Miligan Evaluation and application of methods for biological assessment of streams: summary of papers Hydrobiologia 572 2006 1 7
    • (2006) Hydrobiologia , vol.572 , pp. 1-7
    • Marchant, R.1    Norris, R.H.2    Miligan, A.3
  • 36
    • 0002959716 scopus 로고
    • Improving community analysis with the Beals smoothing function
    • B. McCune Improving community analysis with the Beals smoothing function Ecoscience 1 1994 82 86
    • (1994) Ecoscience , vol.1 , pp. 82-86
    • McCune, B.1
  • 37
    • 0141966686 scopus 로고    scopus 로고
    • Analysis of ecological communities
    • Gleneden Beach Oregon
    • B. McCune, and J.B. Grace Analysis of ecological communities MjM Software Design 2002 Gleneden Beach Oregon
    • (2002) MjM Software Design
    • McCune, B.1    Grace, J.B.2
  • 41
    • 0035004296 scopus 로고    scopus 로고
    • Spatial isolation and fish communities in drainage lakes
    • J.D. Olden, D.A. Jackson, and P.R. Peres-Neto Spatial isolation and fish communities in drainage lakes Oecologia 127 2001 572 585
    • (2001) Oecologia , vol.127 , pp. 572-585
    • Olden, J.D.1    Jackson, D.A.2    Peres-Neto, P.R.3
  • 42
    • 84856416992 scopus 로고    scopus 로고
    • Omnr Ontario Ministry of Natural Resources Picton, Ontario
    • OMNR Stream Assessment Protocol for Southern Ontario 2007 Ontario Ministry of Natural Resources Picton, Ontario
    • (2007) Stream Assessment Protocol for Southern Ontario
  • 43
    • 33645102061 scopus 로고    scopus 로고
    • Spatial scale affects community concordance among fishes, benthic macroinvertebrates and bryophytes in boreal streams
    • R. Paavola, T. Muotka, R. Virtanen, J. Heino, D. Jackson, and A. Maki-Petays Spatial scale affects community concordance among fishes, benthic macroinvertebrates and bryophytes in boreal streams Ecological Applications 16 2006 368 379
    • (2006) Ecological Applications , vol.16 , pp. 368-379
    • Paavola, R.1    Muotka, T.2    Virtanen, R.3    Heino, J.4    Jackson, D.5    Maki-Petays, A.6
  • 44
    • 0034782527 scopus 로고    scopus 로고
    • How well do multivariate data sets match? Evaluating the association of multivariate biological data sets: Comparing the robustness of Mantel test and a procrustean superimposition approach
    • P.R. Peres-Neto, and D.A. Jackson How well do multivariate data sets match? Evaluating the association of multivariate biological data sets: comparing the robustness of Mantel test and a procrustean superimposition approach Oecologia 129 2001 169 178
    • (2001) Oecologia , vol.129 , pp. 169-178
    • Peres-Neto, P.R.1    Jackson, D.A.2
  • 46
    • 33847242957 scopus 로고    scopus 로고
    • The effectiveness of two common sampling methods for sampling imperiled freshwater fishes
    • M.S Poos, N.E. Mandrak, and R.L. McLaughlin The effectiveness of two common sampling methods for sampling imperiled freshwater fishes Journal of Fish Biology 70 2007 691 708
    • (2007) Journal of Fish Biology , vol.70 , pp. 691-708
    • Poos, M.S.1    Mandrak, N.E.2    McLaughlin, R.L.3
  • 47
    • 58149092277 scopus 로고    scopus 로고
    • A practical framework for selecting among single species, multi-species and ecosystem-based recovery plans
    • M.S. Poos, N.E. Mandrak, and R.L. McLaughlin A practical framework for selecting among single species, multi-species and ecosystem-based recovery plans Canadian Journal of Fisheries and Aquatic Sciences 65 2008 2656 2666
    • (2008) Canadian Journal of Fisheries and Aquatic Sciences , vol.65 , pp. 2656-2666
    • Poos, M.S.1    Mandrak, N.E.2    McLaughlin, R.L.3
  • 48
    • 63849109180 scopus 로고    scopus 로고
    • Functional diversity indices can be driven by methodological choices and species richness
    • M.S. Poos, S.C. Walker, and D.A. Jackson Functional diversity indices can be driven by methodological choices and species richness Ecology 90 2009 341 347
    • (2009) Ecology , vol.90 , pp. 341-347
    • Poos, M.S.1    Walker, S.C.2    Jackson, D.A.3
  • 49
    • 77952289914 scopus 로고    scopus 로고
    • The secondary invasion of the round goy into high diversity Great Lakes tributaries and species at risk hotspots: Potential new concerns for endangered freshwater species
    • M.S. Poos, A.J. Dextrase, A.N. Schwalb, and J. Ackerman The secondary invasion of the round goy into high diversity Great Lakes tributaries and species at risk hotspots: potential new concerns for endangered freshwater species Biological Invasions 12 2010 1269 1284
    • (2010) Biological Invasions , vol.12 , pp. 1269-1284
    • Poos, M.S.1    Dextrase, A.J.2    Schwalb, A.N.3    Ackerman, J.4
  • 50
    • 0001572401 scopus 로고
    • The commonness, and rarity, of species
    • F.W. Preston The commonness, and rarity, of species Ecology 29 1948 254 283
    • (1948) Ecology , vol.29 , pp. 254-283
    • Preston, F.W.1
  • 51
    • 0000367672 scopus 로고    scopus 로고
    • Electrofishing
    • B.R. Murphy, D.W. Willis, American Fisheries Society Bethesda, Maryland
    • J.B. Reynolds Electrofishing B.R. Murphy, D.W. Willis, Fisheries Techniques 1996 American Fisheries Society Bethesda, Maryland 221 253
    • (1996) Fisheries Techniques , pp. 221-253
    • Reynolds, J.B.1
  • 52
    • 0001311747 scopus 로고    scopus 로고
    • The development of the BEAST: A predictive approach for assessing sediment quality in the North American Great Lakes
    • J.F. Wright, D.W. Sutcliffe, M.T. Furse, Freshwater Biological Association Cumbria, UK
    • T.B. Reynoldson, K.E. Day, and T. Pascoe The development of the BEAST: a predictive approach for assessing sediment quality in the North American Great Lakes J.F. Wright, D.W. Sutcliffe, M.T. Furse, Assessing the Biological Quality of Freshwaters: RIVPACS and Similar Techniques 2000 Freshwater Biological Association Cumbria, UK 165 180
    • (2000) Assessing the Biological Quality of Freshwaters: RIVPACS and Similar Techniques , pp. 165-180
    • Reynoldson, T.B.1    Day, K.E.2    Pascoe, T.3
  • 53
    • 0034883866 scopus 로고    scopus 로고
    • Comparison of models predicting invertebrate assemblages for biomonitoring in the Fraser River catchment, British Columbia
    • T.B. Reynoldson, D.M. Rosenberg, and V.H. Resh Comparison of models predicting invertebrate assemblages for biomonitoring in the Fraser River catchment, British Columbia Canadian Journal of Fisheries and Aquatic Sciences 58 2001 1395 1410
    • (2001) Canadian Journal of Fisheries and Aquatic Sciences , vol.58 , pp. 1395-1410
    • Reynoldson, T.B.1    Rosenberg, D.M.2    Resh, V.H.3
  • 56
    • 0002133114 scopus 로고    scopus 로고
    • Biological assessment of river quality: Development of AUSRIVAS models and outputs
    • J.F. Wright, D.W. Sutcliffe, M.T. Furse, Biological Association and Environment Agency Ambleside, Cumbria, UK
    • J.C. Simpson, and R.H. Norris Biological assessment of river quality: development of AUSRIVAS models and outputs J.F. Wright, D.W. Sutcliffe, M.T. Furse, RIVPACS and Similar Techniques for Assessing the Biological Quality of Freshwaters 2000 Biological Association and Environment Agency Ambleside, Cumbria, UK 125 142
    • (2000) RIVPACS and Similar Techniques for Assessing the Biological Quality of Freshwaters , pp. 125-142
    • Simpson, J.C.1    Norris, R.H.2


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