Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments

Biochemistry

Volumn 50, Issue 48, 2011, Pages 10484-10490

  Sato, Keita ^a   Yamashita, Takahiro ^a   Ohuchi, Hideyo ^b   Shichida, Yoshinori ^a  

^a KYOTO UNIVERSITY   (Japan)

^b UNIVERSITY OF TOKUSHIMA   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION MAXIMA; ACTIVATION EFFICIENCY; ACTIVE STATE; BISTABLES; CIS-TO-TRANS ISOMERIZATION; CULTURED CELL; G PROTEIN; LIGHT IRRADIATIONS; MOLECULAR PROPERTIES; PHYLOGENETIC TREES; PROTONATED; REVERSE REACTIONS; SCHIFF-BASE; VISIBLE REGION; VISUAL PIGMENTS; XENOPUS;

CHROMOPHORES; FUNCTIONAL GROUPS; ISOMERIZATION; LIGHT; VISION;

ALDEHYDES;

11 CIS RETINAL; GT PROTEIN; GUANINE NUCLEOTIDE BINDING PROTEIN; INHIBITORY GUANINE NUCLEOTIDE BINDING PROTEIN; OPSIN; PARAPINOPSIN; PINOPSIN; SCHIFF BASE; UNCLASSIFIED DRUG; VERTEBRATE ANCIENT LONG OPSIN; VISUAL PIGMENT; VISUAL PROTEINS AND PIGMENTS;

ABSORPTION; ARTICLE; CELL CULTURE; CHROMATOPHORE; CIS TRANS ISOMERISM; CONTROLLED STUDY; HUMAN; HUMAN CELL; INCUBATION TIME; INVERTEBRATE; IRRADIATION; ISOMERIZATION; LIGHT ABSORPTION; LIGHT INTENSITY; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOREACTIVATION; PHOTOSENSITIZATION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTON TRANSPORT; VERTEBRATE; XENOPUS; XENOPUS TROPICALIS;

ANIMALS; CELLS, CULTURED; GTP-BINDING PROTEINS; HEK293 CELLS; HUMANS; RETINALDEHYDE; ROD OPSINS; XENOPUS; XENOPUS PROTEINS;

EID: 82455219019     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi201212z     Document Type: Article

References (35)

1. Terakita, A. (2005) The opsins Genome Biol. 6, 213
2. Kumbalasiri, T. and Provencio, I. (2005) Melanopsin and other novel mammalian opsins Exp. Eye Res. 81, 368-375 (Pubitemid 41356500)
3. Nakamura, A., Kojima, D., Imai, H., Terakita, A., Okano, T., Shichida, Y., and Fukada, Y. (1999) Chimeric nature of pinopsin between rod and cone visual pigments Biochemistry 38, 14738-14745
4. Koyanagi, M., Kawano, E., Kinugawa, Y., Oishi, T., Shichida, Y., Tamotsu, S., and Terakita, A. (2004) Bistable UV pigment in the lamprey pineal Proc. Natl. Acad. Sci. U.S.A. 101, 6687-6691 (Pubitemid 38586035)
5. Soni, B. G. and Foster, R. G. (1997) A novel and ancient vertebrate opsin FEBS Lett. 406, 279-283 (Pubitemid 27166311)
6. Kojima, D., Mano, H., and Fukada, Y. (2000) Vertebrate ancient-long opsin: A green-sensitive photoreceptive molecule present in zebrafish deep brain and retinal horizontal cells J. Neurosci. 20, 2845-2851 (Pubitemid 30220309)
7. Terakita, A., Koyanagi, M., Tsukamoto, H., Yamashita, T., Miyata, T., and Shichida, Y. (2004) Counterion displacement in the molecular evolution of the rhodopsin family Nat. Struct. Mol. Biol. 11, 284-289 (Pubitemid 38282775)
8. Kojima, D., Oura, T., Hisatomi, O., Tokunaga, F., Fukada, Y., Yoshizawa, T., and Shichida, Y. (1996) Molecular properties of chimerical mutants of gecko blue and bovine rhodopsin Biochemistry 35, 2625-2629
9. Yamashita, T., Ohuchi, H., Tomonari, S., Ikeda, K., Sakai, K., and Shichida, Y. (2010) Opn5 is a UV-sensitive bistable pigment that couples with Gi subtype of G protein Proc. Natl. Acad. Sci. U.S.A. 107, 22084-22089
10. Tachibanaki, S., Imai, H., Mizukami, T., Okada, T., Imamoto, Y., Matsuda, T., Fukada, Y., Terakita, A., and Shichida, Y. (1997) Presence of two rhodopsin intermediates responsible for transducin activation Biochemistry 36, 14173-14180 (Pubitemid 27509853)
11. Lee, E., Linder, M. E., and Gilman, A. G. (1994) Expression of G-protein α subunits in Escherichia coli Methods Enzymol. 237, 146-164 (Pubitemid 124015374)
12. Tsutsui, K., Imai, H., and Shichida, Y. (2007) Photoisomerization efficiency in UV-absorbing visual pigments: Protein-directed isomerization of an unprotonated retinal Schiff base Biochemistry 46, 6437-6445 (Pubitemid 46842887)
13. Trehan, A., Liu, R. S. H., Shichida, Y., Imamoto, Y., Nakamura, K., and Yoshizawa, T. (1990) On retention of chromophore configuration of rhodopsin isomers derived from three dicis retinal isomers Bioorg. Chem. 18, 30-40 (Pubitemid 20249748)
14. Terakita, A., Yamashita, T., Nimbari, N., Kojima, D., and Shichida, Y. (2002) Functional Interaction between Bovine Rhodopsin and G Protein Transducin J. Biol. Chem. 277, 40-46 (Pubitemid 34952025)
15. Wald, G. and Brown, P. K. (1953) The molar extinction of rhodopsin J. Gen. Physiol. 37, 189-200
16. Matthews, R. G., Hubbard, R., Brown, P. K., and Wald, G. (1963) Tautomeric Forms of Metarhodopsin J. Gen. Physiol. 47, 215-240
17. Ritter, E., Zimmermann, K., Heck, M., Hofmann, K. P., and Bartl, F. J. (2004) Transition of rhodopsin into the active metarhodopsin II state opens a new light-induced pathway linked to Schiff base isomerization J. Biol. Chem. 279, 48102-48111 (Pubitemid 39540964)
18. Sarvazyan, N. A., Remmers, A. E., and Neubig, R. R. (1998) Determinants of Gi1α and βγ Binding J. Biol. Chem. 273, 7934-7940
19. Phillips, W. J. and Cerione, R. A. (1992) Rhodopsin/transducin interactions. I. Characterization of the binding of the transducin-βγ subunit complex to rhodopsin using fluorescence spectroscopy J. Biol. Chem. 267, 17032-17039
20. König, B., Welte, W., and Hofmann, K. P. (1989) Photoactivation of rhodopsin and interaction with transducin in detergent micelles: Effect of 'doping' with steroid molecules FEBS Lett. 257, 163-166 (Pubitemid 19262704)
21. Doukas, A. G., Aton, B., Callender, R. H., and Ebrey, T. G. (1978) Resonance Raman studies of bovine metarhodopsin I and metarhodopsin II Biochemistry 17, 2430-2435 (Pubitemid 8365768)
22. Terakita, A., Tsukamoto, H., Koyanagi, M., Sugahara, M., Yamashita, T., and Shichida, Y. (2008) Expression and comparative characterization of Gq-coupled invertebrate visual pigments and melanopsin J. Neurochem. 105, 883-890 (Pubitemid 351562728)
23. Tsukamoto, H., Farrens, D. L., Koyanagi, M., and Terakita, A. (2009) The magnitude of the light-induced conformational change in different rhodopsins correlates with their ability to activate G proteins J. Biol. Chem. 284, 20676-20683
24. Fahmy, K., Siebert, F., and Sakmar, T. P. (1994) A mutant rhodopsin photoproduct with a protonated Schiff base displays an active-state conformation: A Fourier-transform infrared spectroscopy study Biochemistry 33, 13700-13705 (Pubitemid 24381931)
25. Zvyaga, T. A., Fahmy, K., and Sakmar, T. P. (1994) Characterization of rhodopsin-transducin interaction: A mutant rhodopsin photoproduct with a protonated Schiff base activates transducin Biochemistry 33, 9753-9761 (Pubitemid 24272936)
26. Zhukovsky, E. A. and Oprian, D. D. (1989) Effect of carboxylic acid side chains on the absorption maximum of visual pigments Science 246, 928-930 (Pubitemid 20010506)
27. Sakmar, T. P., Franke, R. R., and Khorana, H. G. (1989) Glutamic acid-113 serves as the retinylidene Schiff base counterion in bovine rhodopsin Proc. Natl. Acad. Sci. U.S.A. 86, 8309-8313 (Pubitemid 19286049)
28. --binding site in the human red and green color vision pigments Biochemistry 32, 2125-2130 (Pubitemid 23094870)
29. Yan, E. C. Y., Kazmi, M. A., De, S., Chang, B. S. W., Seibert, C., Marin, E. P., Mathies, R. A., and Sakmar, T. P. (2002) Function of extracellular loop 2 in rhodopsin: Glutamic acid 181 modulates stability and absorption wavelength of metarhodopsin II Biochemistry 41, 3620-3627 (Pubitemid 34224674)
30. Halford, S., Pires, S. S., Turton, M., Zheng, L., González- Menéndez, I., Davies, W. L., Peirson, S. N., García- Fernández, J. M., Hankins, M. W., and Foster, R. G. (2009) VA opsin-based photoreceptors in the hypothalamus of birds Curr. Biol. 19, 1396-1402
31. Soni, B. G., Philp, A. R., Foster, R. G., and Knox, B. E. (1998) Novel retinal photoreceptors Nature 394, 27-28
32. Philp, A. R., Garcia-Fernandez, J. M., Soni, B. G., Lucas, R. J., Bellingham, J., and Foster, R. G. (2000) Vertebrate ancient (VA) opsin and extraretinal photoreception in the Atlantic salmon (Salmo salar) J. Exp. Biol. 203, 1925-1936 (Pubitemid 30441796)
33. Edgar, R. C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32, 1792-1797 (Pubitemid 38832724)
34. Whelan, S. and Goldman, N. (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach Mol. Biol. Evol. 18, 691-699 (Pubitemid 32372940)
35. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods Mol. Biol. Evol. 28, 2731-2739