Searching NCBI databases using Entrez

Current Protocols in Human Genetics

Volumn , Issue SUPPL. 71, 2011, Pages

  Gibney, Gretchen ^a   Baxevanis, Andreas D ^a  

^a NONE

Author keywords

Biological databases; Entrez; Integrated information retrieval; NCBI databases

Indexed keywords

ARTICLE; COMPUTER INTERFACE; COMPUTER PROGRAM; ENTREZ SYSTEM; FACTUAL DATABASE; GENETIC ALGORITHM; HUMAN COMPUTER INTERACTION; INFORMATION RETRIEVAL; INTERNET; NCBI DATABASE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 82455216713     PISSN: 19348266     EISSN: 19348258     Source Type: Journal    
DOI: 10.1002/0471142905.hg0610s71     Document Type: Article

References (14)

1. Altschul, S., Gish, W., Miller, W., Myers, E., and Lipman, D. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Barrett, T., Suzek, T.O., Troup, D.B.,Wilhite, S.E., Ngau, W.C., Ledoux, P., Rudnev, D., Lash, A.E., Fujibuchi, W., and Edgar, R. 2005. NCBI GEO: Mining millions of expression profiles- database and tools. Nucleic Acids Res. 33:D562-D566.
3. Baxevanis, A.D., Stein, L.D., Stormo, G.D., and Yates, J.R. III. 2011. Current Protocols in Bioinformatics. John Wiley & Sons, Hoboken, N.J.
4. Bhagwat, M. 2010. Searching NCBI's dbSNP database. Curr. Protoc. Bioinform. 32:1.19.1-1.19.18.
5. Borate, B. and Baxevanis, A.D. 2009. Searching Online Mendelian Inheritance in Man (OMIM) for information on genetic loci involved in human disease. Curr. Protoc. Bioinform. 27:1.2.1-1.2.13.
6. Cho, K.R., Oliner, J.D., Simons, J.W., Hedrick, L., Fearon, E.R., Preisinger, A.C., Hedge, P., Silverman, G.A., and Vogelstein, B. 1994. The DCC gene: Structural analysis and mutations in colorectal carcinomas. Genomics 19:525-531.
7. Gibrat, J.-F., Madej, T., and Bryant, S. 1996. Surprising similarities in structure comparison. Curr. Opin. Struct. Biol. 6:377-385.
8. Goodsell, D.S. 2005. Representing structural information with RasMol. Curr. Protoc. Bioinform. 5.4.1-5.4.23.
9. Hamosh, A., Scott, A.F., Amberger, J., Bocchini, C., Valle, D., and McKusick, V.A. 2002. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 30:52-55.
10. Madej, T., Gibrat, J.-F., and Bryant, S. 1995. Threading a database of protein cores. Proteins 23:356-369.
11. McKusick, V.A. 1998. Online Mendelian inheritance in man: A catalog of human genes and genetic disorders, 12th Edition. The Johns Hopkins University Press, Baltimore, Maryland.
12. Mullikin, J.C. and Sherry, S.T. 2005. Sequence polymorphisms. In Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 3rd Edition (A.D. Baxevanis and B.F.F. Ouellette, eds.) pp. 171-193. John Wiley & Sons, Hoboken, New Jersey.
13. Wilbur, W. and Coffee, L. 1994. The effectiveness of document neighboring in search enhancement. Inf. Process Manage. 30:253-266.
14. Wilbur, W. and Yang, Y. 1996. An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts. Comput. Biol. Med. 26:209-222.