Structural basis for the DNA-binding activity of the bacterial Β-propeller protein YncE

Acta Crystallographica Section D: Biological Crystallography

Volumn 67, Issue 12, 2011, Pages 1045-1053

  Kagawa, Wataru ^a   Sagawa, Tomohiko ^a   Niki, Hironori ^b   Kurumizaka, Hitoshi ^a  

^a WASEDA UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

Author keywords

propellers; DNA; YncE

Indexed keywords

DNA; ESCHERICHIA COLI PROTEIN; YNCE PROTEIN, E COLI;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ESCHERICHIA COLI; METABOLISM; PROTEIN TERTIARY STRUCTURE; STRUCTURAL HOMOLOGY; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; DNA; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; STRUCTURAL HOMOLOGY, PROTEIN;

EID: 82455210471     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444911045033     Document Type: Article

References (18)

1. Baars, L., Ytterberg, A. J., Drew, D., Wagner, S., Thilo, C., van Wijk, K. J. & de Gier, J. W. (2006). J. Biol. Chem. 281, 10024-10034.
2. Baba-Dikwa, A., Thompson, D., Spencer, N. J., Andrews, S. C. & Watson, K. A. (2008). Acta Cryst. F64, 966-969.
3. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
4. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
5. Fülöp, V. & Jones, D. T. (1999). Curr. Opin. Struct. Biol. 9, 715-721.
6. Holm, L. & Rosenström, P. (2010). Nucleic Acids Res. 38, W545-W549.
7. Jing, H., Takagi, J., Liu, L., Lindgren, S., Zhang, R., Joachimiak, A., Wang, J. & Springer, T. A. (2002). Structure, 10, 1453-1464.
8. Korczynska, M., Mukhtar, T. A., Wright, G. D. & Berghuis, A. M. (2007). Proc. Natl Acad. Sci. USA, 104, 10388-10393.
9. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
10. McHugh, J. P., Rodr?́guez-Quinoñes, F., Abdul-Tehrani, H., Svistunenko, D. A., Poole, R. K., Cooper, C. E. & Andrews, S. C. (2003). J. Biol. Chem. 278, 29478-29486.
11. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
12. Ruthenburg, A. J., Wang, W., Graybosch, D. M., Li, H., Allis, C. D., Patel, D. J. & Verdine, G. L. (2006). Nature Struct. Mol. Biol. 13, 704-712.
13. Scrima, A., Kon?́cková, R., Czyzewski, B. K., Kawasaki, Y., Jeffrey, P. D., Groisman, R., Nakatani, Y., Iwai, S., Pavletich, N. P. & Thomä, N. H. (2008). Cell, 135, 1213-1223.
14. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
15. Smith, T. F., Gaitatzes, C., Saxena, K. & Neer, E. J. (1999). Trends Biochem. Sci. 24, 181-185.
16. Stirnimann, C. U., Petsalaki, E., Russell, R. B. & Müller, C.W. (2010). Trends Biochem. Sci. 35, 565-574.
17. Terwilliger, T. C. (2003). Acta Cryst. D59, 38-44.
18. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.