Allosteric coupling between transition metal-binding sites in homooligomeric metal sensor proteins

Methods in Molecular Biology

Volumn 796, Issue , 2012, Pages 31-51

  Grossoehme, Nicholas E ^a,b   Giedroc, David P ^a  

^a INDIANA UNIVERSITY   (United States)

^b WINTHROP UNIVERSITY   (United States)

Author keywords

Allosteric coupling free energy; Isothermal titration calorimetry; ITC; Metal sensor protein; Metalloregulation; Metals in biology

Indexed keywords

METAL; PROTEIN;

ALLOSTERISM; ARTICLE; BINDING SITE; CALORIMETRY; CHEMISTRY; METABOLISM; PHYSIOLOGY; PROTEIN MULTIMERIZATION; THERMODYNAMICS;

ALLOSTERIC REGULATION; BINDING SITES; CALORIMETRY; METALS; PROTEIN MULTIMERIZATION; PROTEINS; THERMODYNAMICS;

EID: 82455209540     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-334-9_3     Document Type: Article

References (31)

1. Monod, J., Wyman, J., and Changeux, J.-P. (1965) On the nature of allosteric transitions: A plausible model, J Mol Biol 12, 88-118.
2. Monod, J., Changeux, J.-P., and Jacob, F. (1963) Allosteric proteins and cellular control systems, J Mol Biol 6, 306-329.
3. Ma, Z., Jacobsen, F. E., and Giedroc, D. P. (2009) Coordination chemistry of bacterial metal transport and sensing, Chem Rev 109, 4644-4681.
4. Reinhart, G. D. (2004) Quantitative analysis and interpretation of allosteric behavior, Methods Enzymol 380, 187-203. (Pubitemid 38297496)
5. Giedroc, D. P., and Arunkumar, A. I. (2007) Metal sensor proteins: nature's metalloregulated allosteric switches, Dalton Trans, 3107-3120. (Pubitemid 47117766)
6. Busenlehner, L.S., Pennella, M.A., and Giedroc, D.P. (2003) The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance, FEMS Microbiol Rev 27, 131-143. (Pubitemid 36694652)
7. Lee, S., Arunkumar, A. I., Chen, X., and Giedroc, D. P. (2006) Structural insights into homo- and heterotropic allosteric coupling in the zinc sensor S. aureus CzrA from covalently fused dimers, JAmChem Soc 128, 1937-1947. (Pubitemid 43277334)
8. Peters, W. B., Frasca, V., and Brown, R. K. (2009) Recent developments in isothermal titration calorimetry label free screening, Combinatorial Chemistry; High Throughput Screening 12, 772-790.
9. CRC Handbook of Chemistry and Physics, 75 ed., (1994) CRC Press, London.
10. Magyar, J. S., and Godwin, H. A. (2003) Spectropotentiometric analysis of metal binding to structural zinc-binding sites: accounting quantitatively for pH and metal ion buffering effects, Anal Biochem 320, 39-54. (Pubitemid 36937066)
11. NIST Standard Reference Database 46, Version 7.0.
12. Yu, Q., Kandegedara, A., Xu, Y., and Rorabacher, D. B. (1997) Avoiding interferences from good's buffers: a contiguous series of noncomplexing tertiary amine buffers covering the entire range of pH 3-11, Anal Biochem 253, 50-56. (Pubitemid 27490604)
13. Hegetschweiler, K., and Saltman, P. (1986) Interaction of copper(II) with N-(2-hydroxyethyl) piperazine-N'-ethanesulfonic acid (HEPES), Inorg Chem 25, 107-109.
14. Grossoehme, N. E., Akilesh, S., Guerinot, M. L., and Wilcox, D. E. (2006) Metal-binding thermodynamics of the histidine-rich sequence from the metal-transport protein IRT1 of Arabidopsis thaliana, Inorg Chem 45, 8500-8508.
15. Grossoehme, N. E., and Giedroc, D. P. (2009) Energetics of allosteric negative coupling in the zinc sensor S. aureus CzrA, J Am Chem Soc 131, 17860-17870.
16. + binding to the urease metallochaperone UreE, Biochemistry 46, 10506-10516. (Pubitemid 47417246)
17. Grossoehme, N. E., Spuches, A. M., and Wilcox, D. E. (2010) Application of isothermal titration calorimetry in bioinorganic chemistry, J Biol Inorg Chem 15, 1183-1191.
18. Sharp, K. A., and Honig, B. (1990) Calculating total electrostatic energies with the nonlinear Poisson-Boltzmann equation, J Phys Chem 94, 7684-7692.
19. Krezel, A., Lesniak,W., Jezowska-Bojczuk, M., Mlynarz, P., Brasuñ, J., Kozlowski, H., and Bal, W. (2001) Coordination of heavy metals by dithiothreitol, a commonly used thiol group protectant, J Inorg Biochem 84, 77-88. (Pubitemid 32284915)
20. Cotton, A.W., Geoffrey, M., Carlos, A., Bochman, M. (1999) Advanced Inorganic Chemistry, 6 ed., Wiley, New York.
21. Eicken, C., Pennella, M. A., Chen, X., Koshlap, K. M., VanZile, M. L., Sacchettini, J. C., and Giedroc, D. P. (2003) A metal-ligandmediated intersubunit allosteric switch in related SmtB/ArsR zinc sensor proteins, J Mol Biol 333, 683-695. (Pubitemid 37268012)
22. MicroCal. (2002) MicroCalorimeter User's Manual, Northampton, MA.
23. O'Halloran, T. (1993) Transition metals in control of gene expression, Science 261, 715-725.
24. Taylor, J. R. (1997) in An Introduction to Error Analysis 2nd ed., University Science Books, California.
25. Yang, X., Chen-Barrett, Y., Arosio, P., and Chasteen, N. D. (1998) Reaction paths of iron oxidation and hydrolysis in horse spleen and recombinant human ferritins, Biochemistry 37, 9743-9750. (Pubitemid 28319619)
26. Doyle, M.L., Louie, G., Dal Monte, P.R., and Sokoloski, T.D. (1995) Tight binding affinities determined from thermodynamic linkage to protons by titration calorimetry, 259, 183-194.
27. Baker, B. M., and Murphy, K. P. (1996) Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry, Biophys J 71, 2049-2055. (Pubitemid 26325983)
28. Record, M.T., Jr., Ha, J.H., and Fisher, M.A. (1991) Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA, Methods Enzymol 208, 291-343.
29. Chen, X., Agarwal, A., and Giedroc, D.P. (1998) Structural and functional heterogeneity among the zinc fingers of human MREbinding transcription factor-1, Biochemistry 37, 11152-11161. (Pubitemid 28394863)
30. Arunkumar, A.I., Campanello, G.C., and Giedroc, D.P. (2009) Solution structure of a paradigm ArsR family zinc sensor in the DNAbound state, Proc Natl Acad Sci USA, 106, 18177-18182.
31. Popovych, N., Sun, S., Ebright, R. H., and Kalodimos, C. G. (2006) Dynamically driven protein allostery, Nat Struct Mol Biol 13, 831-838. (Pubitemid 44338778)