Modulation of mRNA levels in the presence of thymocytes and genome mapping for a set of genes expressed in mouse thymic epithelial cells

Immunogenetics

Volumn 46, Issue 2, 1997, Pages 142-151

  Rocha, Dominique ^a   Carrier, Alice ^a   Naspetti, Marianne ^b   Victorero, Geneviève ^a   Anderson, Elizabeth ^c   Botcherby, Mark ^c   Guénet, Jean Louis ^d   Nguyen, Catherine ^a   Naquet, Philippe ^b   Jordan, Bertrand R ^a  

^a INSERM   (France)

^b Lympho stromal Cell Intrac Lab   (France)

^c MRC UK HGMP Resource Centre   (United Kingdom)

^d INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

ANIMAL CELL; ARTICLE; DIFFERENTIATION; EPITHELIUM CELL; GENE EXPRESSION REGULATION; GENE MAPPING; GENE SEQUENCE; GROWTH REGULATION; MOUSE; NONHUMAN; PRIORITY JOURNAL; THYMOCYTE;

ANIMALS; CHROMOSOME MAPPING; COCULTURE TECHNIQUES; EPITHELIAL CELLS; EPITHELIUM; GENE EXPRESSION REGULATION; GENOME; MICE; RNA, MESSENGER; T-LYMPHOCYTES; THYMUS GLAND;

EID: 8244221007     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002510050253     Document Type: Article

References (41)

1. Adams, M.D. et al. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 377 (Snppl): 3-174, 1995
2. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. Basic local alignment search tool. J Mol Biol 215: 403-410, 1990
3. Bernard, K., Auphan, N., Granjeaud, S., Victorero, G., Schmitt-Verhulst, A.-M., Jordan B.R.. and Nguyen, C. Multiplex messenger assay: simultaneous, quantitative measurement of expression for many genes in the context of T cell activation. Nucleic Acids Res 24: 1435-1443, 1996
4. Boguski, M.S. and Schuler, G.D. ESTablishing a human transcript map. Nat Genet 10: 369-371, 1995
5. Church, G.M. and Gilbert, W. (1984). Genomic sequencing. Proc Natl Acad Sci USA 81: 1991-1995
6. Dickinson, L.A., Joh, T., Kohwi. Y., and Kohwi-Shigematsu, T. A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition. Cell 70: 631-645, 1992
7. Dietrich, W.F. et al. A comprehensive genetic map of the mouse genome. Nature 380: 149-152, 1996
8. Dubois, B.L. and Naylor, S.L. Characterization of NIGMS human/ rodent somatic cell hybrid mapping panel 2 by PCR. Genomics 16: 315-319. 1993
9. Feinberg, A.P. and Vogelstein, B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6-13, 1983
10. Fonatsch, C., Duchrow, M., Rieder, H., Schulter, C., and Gerdes, J. Assignment of the human Ki-67 gene (MK167) to 10q25-qter. Genomics 11: 476-477, 1991
11. Godfrey, D. and Zlotnik, A. Control points in early T-cell development. Immunol Today 14: 547-549, 1993
12. Granjeaud, S., Nguyen, C., Rocha, D., Luton, R., and Jordan, B.R. From hybridization image to numerical values: a practical, high throughput quantification system for high density filter hybridizations. Genet Anal Biomol Engng 12: 217-226, 1996
13. Gupta, K., Copeland, N.G., Gilbert, D.J., Jenkins, N.A., and Gray, D.A. Unp, a mouse gene related to the ire oncogene. Oncogene 8: 2307-2310, 1993
14. Gupta, K., Chevrette, M., and Gray, D.A. The Unp proto-oncogene encodes a nuclear protein. Oncogene 9: 1729-1731, 1994
15. Hoheit, O., Sures, I., Ciossek, T., Fuchs, M., and Ullrich, A. Isolation and developmental expression analysis of Enx-1. a novel mouse Polycomb group gene. Mech Dev 55: 171-184, 1996
16. Houlgatte, R., Mariage-Samson, R., Duprat, S., Tessier, A., Bentolila, S., Lamy, B., and Auffray, C. The Genexpress index: a resource for gene discovery and genic map of the human genome. Genome Res 5: 272-304, 1995
17. Iynedjian, PB. Mammalian glucokinase and its gene. Biochem J 293: 1-13, 1993
18. Kim, S., Willison, K.R., and Horwich, A.L. Cytosolic chaperonin subunits have a conserved ATPase domain but diverged polypeptide-binding domains. Trends Biochem Sci 19: 543-548, 1994
19. Kubota, H., Hynes, G., Carne, A., Ashworth, A., and Willison, K. Identification of six Tcp-1-related genes encoding divergent subunits of the TCP-1-containing chaperonin. Curr Biol 4: 89-99, 1994
20. Kubota, H., Hynes, G., and Willison, K. The chaperonin containing t-complex polypeptide 1 (TCP1). Multisubunit machinery assisting in protein folding and assembly in the eukaryotic cytosol. Eur J Biochem 230: 3-16, 1995
21. Lepesant, H., Pierres, M., and Naquet, P. Deficient antigen presentation by thymic epithelial cells reveals differential induction of T cell clone effector functions by CD28-mediated costimulation. Cell Immunol 161: 279-287, 1995
22. Malissen, M., Gillet, A., Ardouin, L., Bouvier, G., Trucy, J., Ferrier, P., Vivier, E., and Malissen, B. Altered T cell development in mice with a targeted mutation of the CD3-epsilon gene. EMBO J 14: 4641-4653, 1995
23. Meilin, A., Shoham, J., Schreiber, L., and Sharabi, Y. The role of thymocytes in regulating thymic epithelial cell growth and function. Scand J Immunol 42: 185-190, 1995
24. Moen, C.J.A., Groot, P.C., Hart, A.A.M., Snoek. M., and Demant, P. Fine mapping of colon tumor specificity (Scc) genes in the mouse, different from the genes known to be somatically mutated in colon cancer. Proc Natl Acad Sci 93: 1082-1086, 1996
25. Nabetani, A., Hatada, I., Morisaki, H., and Mukai, T. Chromosomal assignment and imprinting tests for the mouse delta subunit of the cytosolic chaperonin containing TCP-1 (Cct4) gene to proximal chromosome 11. Genomics 34: 246-249, 1996
26. Nakagomi, K., Kohwi, Y., Dickinson, L.A., and Kohwi-Shigematsu, T. A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATBI. Mol Cell Biol 14: 1852-1860, 1994
27. Naquet, P., Lepesant, H., Luxembourg, A., Brekelmans, P., Devaux, C., and Pierres, M. Establishment and characterization of mouse thymic epithelial cell lines. Thymus 13: 217-226, 1989
28. Nguyen, C., Rocha, D., Granjeaud, S., Baldit, M., Bernard, K., Naquet, P., and Jordan, B.R. Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones. Genomics 29: 207-216, 1995
29. Okubo, K., Hori, N., Matoba, R., Niiyama, T., Fukushima, A., Kojima, Y, and Matsubara, K. Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nat Genet 2: 173-179, 1992
30. Philpott, K.L., Viney, J.L., Kay, G., Rastan, S., Gardiner, E.M., Chae, S., Hayday, A.C., and Owen, M.J. Lymphoid development in mice congenitally lacking T cell receptor alpha/beta-expressing cells. Science 256: 1448-1452, 1992
31. Pietu, G., Alibert, O., Guichard, V., Lamy, B., Bois, F., Leroy, E., Mariage-Samson, R., Houlgatte, R., Soularue, P., and Auffray, C. Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array. Genome Res 6: 492-503, 1996
32. Ritter, M.A. and Boyd, R.L. Development in the thymus: it takes two to tango. Immunol Today 14: 462-469, 1993
33. Saiki, K.K., Scharf, S., Faloona, F., Mullis, K.B., Horn, G.T., Erlich, H.A. and Arnheim, N. Enzymatic amplification of b-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230: 1350-1354, 1985
34. Sambrook, J., Fritsch, E.F., and Maniatis, T. Molecular Cloning: A Laboratory Manual (2nd edn), Cold Spring Harbor Laboratory. Cold Spring Harbor. 1989
35. Sburlati, A.R., Manrow, R.E., and Berger, S.L. Prothymosin a antisense oligomers inhibit myeloma cell division. Proc Natl Acad Sci USA 88: 253-257, 1991
36. Schena, M., Shalon, D., Davis, R.W., and Brown, P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467-470, 1995
37. Schuler, G.D. et al. A gene map of the human genome. Science 274: 540-546, 1996
38. Shores, E.W., Van Ewjik, W., and Singer, A. Disorganization and restoration of thymic medullary epithelial cells in T cell receptor-negative scid mice: evidence that receptor-bearing lymphocytes influence maturation of the thymic microenvironment. Eur J Immunol 21: 1657-61, 1991
39. Szabo, P., Panneerselvam, C., Clinton, M., Frangou-Lazaridis, M., Weksler, D., Whittington, E., Macera, M.J., Grzeschik, K.-H., Selvakumar, A., and Horecker. B.L. Prothymosin a gene in humans: organization of its promoter region and localization to chromosome 2. Hum Genet 90: 629-634, 1993
40. Willenbrink, W., Halaschek, J., Schuffenhauer, S., Kunz, J., and Steinkasserer, A. Cyclophilin A, the major intracellular receptor for the immunosuppressant cyclosporin A. maps to chromosome 7p11.2-p13: four pseudogenes map to chromosomes 3. 10, 14. and 18. Genomics 28: 101-104, 1995
41. Zhao, N., Hashida, H., Takahashi, N., Misumi, Y., and Sakaki, Y. High-density cDNA filter analysis: a novel approach for large-scale, quantitative analysis of gene expression. Gene 156: 207-213, 1995