Formation of novel CENP-A domains on tandem repetitive DNA and across chromosome breakpoints on human chromosome 8q21 neocentromeres

Chromosoma

Volumn 120, Issue 6, 2011, Pages 621-632

  Hasson, Dan ^a,b   Alonso, Alicia ^a   Cheung, Fanny ^a   Tepperberg, James H ^c   Papenhausen, Peter R ^c   Engelen, John J M ^d   Warburton, Peter E ^a,b  

^a MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^b Mount Sinai Graduate School of Biological Sciences   (United States)

^c LABORATORY CORPORATION OF AMERICA   (United States)

^d MAASTRICHT UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

CENTROMERE PROTEIN A; REPETITIVE DNA;

ARTICLE; CENTROMERE; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOME 8; CHROMOSOME 8Q; CHROMOSOME BAND; CHROMOSOME BREAKAGE; CHROMOSOME REARRANGEMENT; CHROMOSOME STRUCTURE; CONTROLLED STUDY; CYTOGENETICS; DICENTRIC CHROMOSOME; DNA STRAND BREAKAGE; FLUORESCENCE IN SITU HYBRIDIZATION; HUMAN; HUMAN CELL; NEOCENTROMERE; PROTEIN DOMAIN; QUANTITATIVE ANALYSIS; RING CHROMOSOME; TANDEM REPEAT;

ADULT; AUTOANTIGENS; CENTROMERE; CHILD; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOMAL PROTEINS, NON-HISTONE; CHROMOSOME BANDING; CHROMOSOME BREAKPOINTS; CHROMOSOMES, HUMAN, PAIR 8; FEMALE; HUMANS; MALE; PROTEIN BINDING; TANDEM REPEAT SEQUENCES;

EID: 82355173336     PISSN: 00095915     EISSN: 14320886     Source Type: Journal    
DOI: 10.1007/s00412-011-0337-6     Document Type: Article

References (43)

1. RC Allshire GH Karpen 2008 Epigenetic regulation of centromeric chromatin: old dogs, new tricks? Nat Rev Genet 9 923 937 19002142 1:CAS:528:DC%2BD1cXhtlyhtbnO 10.1038/nrg2466 (Pubitemid 50329068)
2. A Alonso R Mahmood S Li F Cheung K Yoda PE Warburton 2003 Genomic microarray analysis reveals distinct locations for the CENP-A binding domains in three human chromosome 13q32 neocentromeres Hum Mol Genet 12 2711 2721 12928482 1:CAS:528:DC%2BD3sXot1Cqt7o%3D 10.1093/hmg/ddg282 (Pubitemid 37304693)
3. A Alonso B Fritz D Hasson G Abrusan F Cheung K Yoda B Radlwimmer AG Ladurner PE Warburton 2007 Co-localization of CENP-C and CENP-H to discontinuous domains of CENP-A chromatin at human neocentromeres Genome Biol 8 R148 17651496 10.1186/gb-2007-8-7-r148 (Pubitemid 351903189)
4. A Alonso D Hasson F Cheung PE Warburton 2010 A paucity of heterochromatin at functional human neocentromeres Epigenetics Chromatin 3 6 20210998 10.1186/1756-8935-3-6
5. D Amor K Bentley J Ryan J Perry L Wong H Slater K Choo 2004 Human centromere repositioning "in progress" Proc Natl Acad Sci U S A 101 6542 6547 15084747 1:CAS:528:DC%2BD2cXjvVyitbc%3D 10.1073/pnas.0308637101 (Pubitemid 38586010)
6. N Archidiacono R Antonacci R Marzella P Finelli A Lonoce M Rocchi 1995 Comparative mapping of human alphoid sequences in great apes using fluorescence in situ hybridization Genomics 25 477 484 7789981 1:CAS:528:DyaK2MXjvV2hsrc%3D 10.1016/0888-7543(95)80048-Q
7. EA Bassett S Wood KJ Salimian S Ajith DR Foltz BE Black 2010 Epigenetic centromere specification directs aurora B accumulation but is insufficient to efficiently correct mitotic errors J Cell Biol 190 177 185 20643881 1:CAS:528:DC%2BC3cXhtVGlur%2FL 10.1083/jcb.201001035
8. MD Blower BA Sullivan GH Karpen 2002 Conserved organization of centromeric chromatin in flies and humans Dev Cell 2 319 330 11879637 1:CAS:528:DC%2BD38Xit1Gltbk%3D 10.1016/S1534-5807(02)00135-1 (Pubitemid 34266117)
9. N Bukvic F Susca M Gentile E Tangari A Iannirubeto G Guanti 1996 An unusual dicentric Y chromosome with a functional centromere with no detectable alpha satellite Hum Genet 97 453 456 8834241 1:CAS:528:DyaK28XisFOqsLo%3D 10.1007/BF02267065
10. Capozzi O, Purgato S, D'Addabbo P, Archidiacono N, Battaglia P, Baroncini A, Capucci A, Stanyon R, Della Valle G, Rocchi M (2009) Evolutionary descent of a human chromosome 6 neocentromere: a jump back to 17 million years ago. Genome Res 19:778-784
11. AC Chueh LH Wong N Wong KH Choo 2005 Variable and hierarchical size distribution of L1-retroelement-enriched CENP-A clusters within a functional human neocentromere Hum Mol Genet 14 85 93 15537667 1:CAS:528: DC%2BD2MXitFGmtQ%3D%3D 10.1093/hmg/ddi008 (Pubitemid 40123465)
12. Y Dalal H Wang S Lindsay S Henikoff 2007 Tetrameric structure of centromeric nucleosomes in interphase drosophila cells PLoS Biol 5 e218 17676993 10.1371/journal.pbio.0050218 (Pubitemid 47328282)
13. JJ Engelen JC Albrechts GJ Hamers JP Geraedts 1998 A simple and efficient method for microdissection and microFISH J Med Genet 35 265 268 9598716 1:CAS:528:DyaK1cXis1Wnt7w%3D 10.1136/jmg.35.4.265 (Pubitemid 28188178)
14. Y Ge MJ Wagner M Siciliano DE Wells 1992 Sequence, higher order repeat structure, and long-range organization of alpha satellite DNA specific to human chromosome 8 Genomics 13 585 593 1639387 1:CAS:528:DyaK3sXitVKmsb0%3D 10.1016/0888-7543(92)90128-F
15. K Ishii Y Ogiyama Y Chikashige S Soejima F Masuda T Kakuma Y Hiraoka K Takahashi 2008 Heterochromatin integrity affects chromosome reorganization after centromere dysfunction Science 321 1088 1091 18719285 1:CAS:528: DC%2BD1cXhtVSitrbF 10.1126/science.1158699
16. AC Knegt S Li JJM Engelen EK Bijlsma PE Warburton 2002 Prenatal diagnosis of a karyotypically normal pregnancy in a mother with a supernumerary neocentric 13q21→13q22 chromosome and balancing reciprocal deletion Prenat Diagn 23 215 220 10.1002/pd.559 (Pubitemid 36323681)
17. T Liehr GE Utine U Trautmann A Rauch A Kuechler J Pietrzak E Bocian N Kosyakova K Mrasek K Boduroglu A Weise D Aktas 2007 Neocentric small supernumerary marker chromosomes (sSMC)-three more cases and review of the literature Cytogenet Genome Res 118 31 37 17901697 1:STN:280: DC%2BD2srnvV2qsA%3D%3D 10.1159/000106438 (Pubitemid 47492009)
18. Liehr T, Kosyakova N, Weise A, Ziegler M, Raabe-Meyer G (2010) First case of a neocentromere formation in an otherwise normal chromosome 7. Cytogenet Genome Res 128:189-191
19. DP Locke LW Hillier WC Warren KC Worley LV Nazareth DM Muzny SP Yang Z Wang AT Chinwalla P Minx M Mitreva L Cook KD Delehaunty C Fronick H Schmidt LA Fulton RS Fulton JO Nelson V Magrini C Pohl TA Graves C Markovic A Cree HH Dinh J Hume CL Kovar GR Fowler G Lunter S Meader A Heger CP Ponting T Marques-Bonet C Alkan L Chen Z Cheng JM Kidd EE Eichler S White S Searle AJ Vilella Y Chen P Flicek J Ma B Raney B Suh R Burhans J Herrero D Haussler R Faria O Fernando F Darre D Farre E Gazave M Oliva A Navarro R Roberto O Capozzi N Archidiacono G Della Valle S Purgato M Rocchi MK Konkel JA Walker B Ullmer MA Batzer AF Smit R Hubley C Casola DR Schrider MW Hahn V Quesada XS Puente GR Ordonez C Lopez-Otin T Vinar B Brejova A Ratan RS Harris W Miller C Kosiol HA Lawson V Taliwal AL Martins A Siepel A Roychoudhury X Ma J Degenhardt CD Bustamante RN Gutenkunst T Mailund JY Dutheil A Hobolth MH Schierup OA Ryder Y Yoshinaga PJ de Jong GM Weinstock J Rogers ER Mardis RA Gibbs RK Wilson 2011 Comparative and demographic analysis of orang-utan genomes Nature 469 529 533 21270892 1:CAS:528: DC%2BC3MXhtFShtbg%3D 10.1038/nature09687
20. M Lomiento Z Jiang P D'Addabbo EE Eichler M Rocchi 2008 Evolutionary-new centromeres preferentially emerge within gene deserts Genome Biol 9 R173 19087244 10.1186/gb-2008-9-12-r173
21. M Manvelyan FW Cremer J Lance R Klas C Kelbova C Ramel H Reichenbach C Schmidt E Ewers K Kreskowski M Ziegler N Kosyakova T Liehr 2011 New cytogenetically visible copy number variant in region 8q21.2 Mol Cytogenet 4 1 21208402 10.1186/1755-8166-4-1
22. Marshall OJ, Choo AKH (2009) Neocentromeres. The kinetochore. Springer, New York, pp 1-30
23. OJ Marshall AC Chueh LH Wong KH Choo 2008 Neocentromeres: new insights into centromere structure, disease development, and karyotype evolution Am J Hum Genet 82 261 282 18252209 1:CAS:528:DC%2BD1cXit1Sjurk%3D 10.1016/j.ajhg.2007. 11.009 (Pubitemid 351726108)
24. AE Murmann DF Conrad H Mashek CA Curtis RI Nicolae C Ober S Schwartz 2009 Inverted duplications on acentric markers: mechanism of formation Hum Mol Genet 18 2241 2256 19336476 1:CAS:528:DC%2BD1MXmtlWntL8%3D 10.1093/hmg/ddp160
25. S Nasuda S Hudakova I Schubert A Houben TR Endo 2005 Stable barley chromosomes without centromeric repeats Proc Natl Acad Sci U S A 102 9842 9847 15998740 1:CAS:528:DC%2BD2MXmsFarurs%3D 10.1073/pnas.0504235102 (Pubitemid 40993655)
26. SA Ribeiro P Vagnarelli Y Dong T Hori BF McEwen T Fukagawa C Flors WC Earnshaw 2010 A super-resolution map of the vertebrate kinetochore Proc Natl Acad Sci U S A 107 10484 10489 20483991 1:CAS:528:DC%2BC3cXnvV2isb4%3D 10.1073/pnas.1002325107
27. DL Satinover GH Vance DL Van Dyke S Schwartz 2001 Cytogenetic analysis and construction of a BAC contig across a common neocentromeric region from 9p Chromosoma 110 275 283 11534819 1:CAS:528:DC%2BD3MXlt1ClsLk%3D 10.1007/s004120100143 (Pubitemid 32755022)
28. M Spiegel G Hickmann G Senger P Kozlowski O Bartsch 2003 Two new cases of analphoid maker chromosomes Am J Med Genet 116A 284 289 12503108 10.1002/ajmg.a.10916 (Pubitemid 36056749)
29. R Stanyon M Rocchi O Capozzi R Roberto D Misceo M Ventura MF Cardone F Bigoni N Archidiacono 2008 Primate chromosome evolution: ancestral karyotypes, marker order and neocentromeres Chromosome Res 16 17 39 18293103 1:CAS:528:DC%2BD1cXitlOjtb4%3D 10.1007/s10577-007-1209-z (Pubitemid 351294785)
30. KM Stimpson IY Song A Jauch H Holtgreve-Grez KE Hayden JM Bridger BA Sullivan 2010 Telomere disruption results in non-random formation of de novo dicentric chromosomes involving acrocentric human chromosomes PLoS Genet 6 e1001061 10.1371/journal.pgen.1001061
31. BA Sullivan GH Karpen 2004 Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin Nat Struct Mol Biol 11 1076 1083 15475964 1:CAS:528:DC%2BD2cXpt1ejsLc%3D 10.1038/nsmb845 (Pubitemid 39453336)
32. CN Topp RJ Okagaki JR Melo RG Kynast RL Phillips RK Dawe 2009 Identification of a maize neocentromere in an oat-maize addition line Cytogenet Genome Res 124 228 238 19556776 1:STN:280:DC%2BD1MvksFCqsg%3D%3D 10.1159/000218128
33. C Tyler-Smith G Gimelli S Giglio G Floridia A Pandya G Terzoli PE Warburton WC Earnshaw O Zuffardi 1999 Transmission of a fully functional human neocentromere through three generations Am J Hum Genet 64 1440 1444 10205277 1:STN:280:DyaK1M3itlCguw%3D%3D 10.1086/302380 (Pubitemid 30468764)
34. M Ventura JM Mudge V Palumbo S Burn E Blennow M Pierluigi R Giorda O Zuffardi N Archidiacono MS Jackson M Rocchi 2003 Neocentromeres in 15q24-26 map to duplicons which flanked an ancestral centromere in 15q25 Genome Res 13 2059 2068 12915487 1:CAS:528:DC%2BD3sXnslKht7s%3D 10.1101/gr.1155103 (Pubitemid 37161763)
35. A Ventura S Weigl L Carbone M Cardone D Misceo M Teti P D'Addabbo A Wandall E Björck P de Jong X She E Eichler N Archidiacono M Rocchi 2004 Recurrent sites for new centromere seeding Gen Res 14 1686 1703 10.1101/gr.2608804 (Pubitemid 39276426)
36. M Ventura F Antonacci MF Cardone R Stanyon P D'Addabbo A Cellamare LJ Sprague EE Eichler N Archidiacono M Rocchi 2007 Evolutionary formation of new centromeres in macaque Science 316 243 246 17431171 1:CAS:528: DC%2BD2sXktVektLk%3D 10.1126/science.1140615 (Pubitemid 46633095)
37. CM Wade E Giulotto S Sigurdsson M Zoli S Gnerre F Imsland TL Lear DL Adelson E Bailey RR Bellone H Blocker O Distl RC Edgar M Garber T Leeb E Mauceli JN MacLeod MC Penedo JM Raison T Sharpe J Vogel L Andersson DF Antczak T Biagi MM Binns BP Chowdhary SJ Coleman G Della Valle S Fryc G Guerin T Hasegawa EW Hill J Jurka A Kiialainen G Lindgren J Liu E Magnani JR Mickelson J Murray SG Nergadze R Onofrio S Pedroni MF Piras T Raudsepp M Rocchi KH Roed OA Ryder S Searle L Skow JE Swinburne AC Syvanen T Tozaki SJ Valberg M Vaudin JR White MC Zody ES Lander K Lindblad-Toh 2009 Genome sequence, comparative analysis, and population genetics of the domestic horse Science 326 865 867 19892987 1:CAS:528:DC%2BD1MXhtlGhs7%2FF 10.1126/science.1178158
38. PE Warburton 2004 Chromosomal dynamics of human neocentromere formation Chromosome Res 12 617 626 15289667 1:CAS:528:DC%2BD2cXmtF2msrY%3D 10.1023/B:CHRO.0000036585.44138.4b (Pubitemid 41214118)
39. PE Warburton CA Cooke S Bourassa O Vafa BA Sullivan G Stetten G Gimelli D Warburton C Tyler-Smith KF Sullivan GG Poirier WC Earnshaw 1997 Immunolocalization of CENP-A suggests a distinct nucleosome structure at the inner kinetochore plate of active centromeres Curr Biol 7 901 904 9382805 1:CAS:528:DyaK2sXnslaju70%3D 10.1016/S0960-9822(06)00382-4 (Pubitemid 27493133)
40. PE Warburton M Dolled R Mahmood A Alonso S Li K Naritomi T Tohma T Nagai T Hasegawa H Ohashi LC Govaerts BH Eussen JO Van Hemel C Lozzio S Schwartz JJ Dowhanick-Morrissette NB Spinner H Rivera JA Crolla C Yu D Warburton 2000 Molecular cytogenetic analysis of eight inversion duplications of human chromosome 13q that each contain a neocentromere Am J Hum Genet 66 1794 1806 10777715 1:CAS:528:DC%2BD3cXntV2jtbg%3D 10.1086/302924 (Pubitemid 30480087)
41. PE Warburton D Hasson F Guillem C Lescale X Jin G Abrusan 2008 Analysis of the largest tandemly repeated DNA families in the human genome BMC Genomics 9 533 18992157 10.1186/1471-2164-9-533
42. H Yan PB Talbert HR Lee J Jett S Henikoff F Chen J Jiang 2008 Intergenic locations of rice centromeric chromatin PLoS Biol 6 e286 19067486 10.1371/journal.pbio.0060286
43. SG Zeitlin NM Baker BR Chapados E Soutoglou JY Wang MW Berns DW Cleveland 2009 Double-strand DNA breaks recruit the centromeric histone CENP-A Proc Natl Acad Sci U S A 106 15762 15767 19717431 1:CAS:528:DC%2BD1MXhtFyjsLbO 10.1073/pnas.0908233106