-
1
-
-
0036258115
-
Safety of non-antiarrhythmic drugs that prolong the QT interval or induce torsade de pointes: An overview
-
De Ponti, F.; Poluzzi, E.; Cavalli, A.; Recanatini, M.; Montanaro, N. Safety of non-antiarrhythmic drugs that prolong the QT interval or induce torsade de pointes: An overview Drug Safety 2002, 25 (4) 263-286 (Pubitemid 34569360)
-
(2002)
Drug Safety
, vol.25
, Issue.4
, pp. 263-286
-
-
De Ponti, F.1
Poluzzi, E.2
Cavalli, A.3
Recanatini, M.4
Montanaro, N.5
-
2
-
-
0038248920
-
+ channel. A model for bad behavior
-
DOI 10.1021/jm0205651
-
Pearlstein, R.; Vaz, R.; Rampe, D. Understanding the structure-activity relationship of the human ether-a-go-go-related gene cardiac K+ channel. A model for bad behavior J. Med. Chem. 2003, 46 (11) 2017-2022 (Pubitemid 36583481)
-
(2003)
Journal of Medicinal Chemistry
, vol.46
, Issue.11
, pp. 2017-2022
-
-
Pearlstein, R.1
Vaz, R.2
Rampe, D.3
-
3
-
-
2442562493
-
Drugs, hERG, and sudden death
-
Brown, A. M. Drugs, hERG, and sudden death Cell Calcium 2004, 35 (6) 543-547
-
(2004)
Cell Calcium
, vol.35
, Issue.6
, pp. 543-547
-
-
Brown, A.M.1
-
4
-
-
0035142612
-
Screening lead compounds for QT interval prolongation
-
DOI 10.1016/S1359-6446(00)01602-0, PII S1359644600016020
-
Netzer, R.; Ebneth, A.; Bischoff, U.; Pongs, O. Screening lead compounds for QT interval prolongation Drug Discovery Today 2001, 6 (2) 78-84 (Pubitemid 32101509)
-
(2001)
Drug Discovery Today
, vol.6
, Issue.2
, pp. 78-84
-
-
Netzer, R.1
Ebneth, A.2
Bischoff, U.3
Pongs, O.4
-
5
-
-
33745413284
-
Quantitative structure - Activity relationship studies on inhibition of HERG potassium channels
-
DOI 10.1021/ci050450g
-
Yoshida, K.; Niwa, T. Quantitative structure-activity relationship studies on inhibition of HERG potassium channels J. Chem. Inf. Model. 2006, 46 (3) 1371-8 (Pubitemid 43999180)
-
(2006)
Journal of Chemical Information and Modeling
, vol.46
, Issue.3
, pp. 1371-1378
-
-
Yoshida, K.1
Niwa, T.2
-
6
-
-
0036904104
-
A virtual screening method for prediction of the hERG potassium channel liability of compound libraries
-
DOI 10.1002/1439-7633(20020503)3:5<455::AID-CBIC455>3.0.CO;2-L
-
Roche, O.; Trube, G.; Zuegge, J.; Pflimlin, P.; Alanine, A.; Schneider, G. A virtual screening method for prediction of the hERG potassium channel liability of compound libraries ChemBioChem 2002, 3 (5) 455-459 (Pubitemid 36002290)
-
(2002)
ChemBioChem
, vol.3
, Issue.5
, pp. 455-459
-
-
Roche, O.1
Trube, G.2
Zuegge, J.3
Pflimlin, P.4
Alanine, A.5
Schneider, G.6
-
7
-
-
79959469908
-
A comprehensive support vector machine binary hERG classification model based on extensive but biased end point hERG data sets
-
Shen, M. Y.; Su, B. H.; Esposito, E. X.; Hopfinger, A. J.; Tseng, Y. J. A comprehensive support vector machine binary hERG classification model based on extensive but biased end point hERG data sets Chem. Res. Toxicol. 2011, 24 (6) 934-49
-
(2011)
Chem. Res. Toxicol.
, vol.24
, Issue.6
, pp. 934-949
-
-
Shen, M.Y.1
Su, B.H.2
Esposito, E.X.3
Hopfinger, A.J.4
Tseng, Y.J.5
-
8
-
-
78049442434
-
In silico binary classification QSAR models based on 4D-fingerprints and MOE descriptors for prediction of hERG blockage
-
Su, B. H.; Shen, M. Y.; Esposito, E. X.; Hopfinger, A. J.; Tseng, Y. J. In silico binary classification QSAR models based on 4D-fingerprints and MOE descriptors for prediction of hERG blockage J. Chem. Inf. Model. 2010, 50 (7) 1304-18
-
(2010)
J. Chem. Inf. Model.
, vol.50
, Issue.7
, pp. 1304-1318
-
-
Su, B.H.1
Shen, M.Y.2
Esposito, E.X.3
Hopfinger, A.J.4
Tseng, Y.J.5
-
9
-
-
46749116554
-
Shape signatures: New descriptors for predicting cardiotoxicity in silico
-
DOI 10.1021/tx800063r
-
Ekins, S.; Chekmarev, D. S.; Kholodovych, V.; Balakin, K. V.; Ivanenkov, Y.; Welsh, W. J. Shape signatures: New descriptors for predicting cardiotoxicity in silico Chem. Res. Toxicol. 2008, 21 (6) 1304-1314 (Pubitemid 351967396)
-
(2008)
Chemical Research in Toxicology
, vol.21
, Issue.6
, pp. 1304-1314
-
-
Chekmarev, D.S.1
Kholodovych, V.2
Balakin, K.V.3
Ivanenkov, Y.4
Ekins, S.5
Welsh, W.J.6
-
10
-
-
0038487659
-
Prediction of hERG potassium channel affinity by traditional and hologram QSAR methods
-
DOI 10.1016/S0960-894X(03)00492-X
-
Keseru, G. M. Prediction of hERG potassium channel affinity by traditional and hologram qSAR methods Bioorg. Med. Chem. Lett. 2003, 13 (16) 2773-5 (Pubitemid 36851568)
-
(2003)
Bioorganic and Medicinal Chemistry Letters
, vol.13
, Issue.16
, pp. 2773-2775
-
-
Keseru, G.M.1
-
11
-
-
33244474244
-
Development and evaluation of an in silico model for hERG binding
-
DOI 10.1021/ci050308f
-
Song, M.; Clark, M. Development and Evaluation of an in Silico Model for hERG Binding J. Chem. Inf. Model. 2006, 46 (1) 392-400 (Pubitemid 43282130)
-
(2006)
Journal of Chemical Information and Modeling
, vol.46
, Issue.1
, pp. 392-400
-
-
Song, M.1
Clark, M.2
-
12
-
-
0036229805
-
Three-dimensional quantitative structure-activity relationship for inhibition of human ether-a-go-go-related gene potassium channel
-
DOI 10.1124/jpet.301.2.427
-
Ekins, S.; Crumb, W. J.; Sarazan, R. D.; Wikel, J. H.; Wrighton, S. A. Three-dimensional quantitative structure-activity relationship for inhibition of human ether-a-go-go-related gene potassium channel J. Pharmacol. Exp. Ther. 2002, 301 (2) 427-434 (Pubitemid 34429951)
-
(2002)
Journal of Pharmacology and Experimental Therapeutics
, vol.301
, Issue.2
, pp. 427-434
-
-
Ekins, S.1
Crumb, W.J.2
Dustan Sarazan, R.3
Wikel, J.H.4
Wrighton, S.A.5
-
13
-
-
1842686775
-
+ channel blockers
-
DOI 10.1016/j.bmc.2004.02.003, PII S096808960400104X
-
Aronov, A. M.; Goldman, B. B. A model for identifying HERG K+ channel blockers Bioorg. Med. Chem. 2004, 12 (9) 2307-15 (Pubitemid 38471715)
-
(2004)
Bioorganic and Medicinal Chemistry
, vol.12
, Issue.9
, pp. 2307-2315
-
-
Aronov, A.M.1
Goldman, B.B.2
-
14
-
-
33750998518
-
Common pharmacophores for uncharged human ether-a-go-go-related gene (hERG) blockers
-
DOI 10.1021/jm060500o
-
Aronov, A. M. Common pharmacophores for uncharged human ether-a-go-go-related gene (hERG) blockers J. Med. Chem. 2006, 49 (23) 6917-21 (Pubitemid 44749757)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.23
, pp. 6917-6921
-
-
Aronov, A.M.1
-
15
-
-
34250836484
-
Drug block of the hERG potassium channel: Insight from modeling
-
DOI 10.1002/prot.21400
-
Stansfeld, P. J.; Gedeck, P.; Gosling, M.; Cox, B.; Mitcheson, J. S.; Sutcliffe, M. J. Drug block of the hERG potassium channel: insight from modeling Proteins: Struct., Funct., Bioinf. 2007, 68 (2) 568-580 (Pubitemid 46981949)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.68
, Issue.2
, pp. 568-580
-
-
Stansfeld, P.J.1
Gedeck, P.2
Gosling, M.3
Cox, B.4
Mitcheson, J.S.5
Sutcliffe, M.J.6
-
16
-
-
14644392097
-
+ channel: Application to ligand binding
-
DOI 10.1016/j.bmcl.2005.01.008
-
Rajamani, R.; Tounge, B. A.; Li, J.; Reynolds, C. H. A two-state homology model of the hERG K+ channel: application to ligand binding Bioorg. Med. Chem. Lett. 2005, 15 (6) 1737-1741 (Pubitemid 40312562)
-
(2005)
Bioorganic and Medicinal Chemistry Letters
, vol.15
, Issue.6
, pp. 1737-1741
-
-
Rajamani, R.1
Tounge, B.A.2
Li, J.3
Reynolds, C.H.4
-
17
-
-
39749088786
-
HERG classification model based on a combination of support vector machine method and GRIND descriptors
-
DOI 10.1021/mp700124e
-
Taboureau, O.; Li, Q. Y.; Jorgensen, F. S.; Oprea, T.; Brunak, S. hERG classification model based on a combination of support vector machine method and GRIND descriptors Mol. Pharmaceutics 2008, 5 (1) 117-127 (Pubitemid 351300041)
-
(2008)
Molecular Pharmaceutics
, vol.5
, Issue.1
, pp. 117-127
-
-
Li, Q.1
Jorgensen, F.S.2
Oprea, T.3
Brunak, S.4
Taboureau, O.5
-
18
-
-
79952124934
-
Combined receptor and ligand-based approach to the universal pharmacophore model development for studies of drug blockade to the hERG1 pore domain
-
Durdagi, S.; Duff, H. J.; Noskov, S. Y. Combined receptor and ligand-based approach to the universal pharmacophore model development for studies of drug blockade to the hERG1 pore domain J. Chem. Inf. Model. 2011, 51 (2) 463-74
-
(2011)
J. Chem. Inf. Model.
, vol.51
, Issue.2
, pp. 463-474
-
-
Durdagi, S.1
Duff, H.J.2
Noskov, S.Y.3
-
19
-
-
0034710933
-
A structural basis for drug-induced long QT syndrome
-
Mitcheson, J. S.; Chen, J.; Lin, M.; Culberson, C.; Sanguinetti, M. C. A structural basis for drug-induced long QT syndrome Proc. Natl. Acad. Sci. U.S.A. 2000, 97 (22) 12329-12333
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, Issue.22
, pp. 12329-12333
-
-
Mitcheson, J.S.1
Chen, J.2
Lin, M.3
Culberson, C.4
Sanguinetti, M.C.5
-
20
-
-
33645816995
-
Molecular determinants of HERG channel block
-
Kamiya, K.; Niwa, R.; Mitcheson, J. S.; Sanguinetti, M. C. Molecular determinants of HERG channel block Mol. Pharmacol. 2006, 69 (5) 1709-16
-
(2006)
Mol. Pharmacol.
, vol.69
, Issue.5
, pp. 1709-1716
-
-
Kamiya, K.1
Niwa, R.2
Mitcheson, J.S.3
Sanguinetti, M.C.4
-
21
-
-
8444244427
-
+ channel blockade by the antiarrhythmic agent dronedarone: Resistance to mutations of the S6 residues Y652 and F656
-
DOI 10.1016/j.bbrc.2004.10.127, PII S0006291X04023800
-
Ridley, J. M.; Milnes, J. T.; Witchel, H. J.; Hancox, J. C. High affinity HERG K(+) channel blockade by the antiarrhythmic agent dronedarone: resistance to mutations of the S6 residues Y652 and F656 Biochem. Biophys. Res. Commun. 2004, 325 (3) 883-91 (Pubitemid 39487955)
-
(2004)
Biochemical and Biophysical Research Communications
, vol.325
, Issue.3
, pp. 883-891
-
-
Ridley, J.M.1
Milnes, J.T.2
Witchel, H.J.3
Hancox, J.C.4
-
22
-
-
0038497465
-
Blockade of HERG potassium currents by fluvoxamine: Incomplete attenuation by S6 mutations at F656 or Y652
-
DOI 10.1038/sj.bjp.0705335
-
Milnes, J. T.; Crociani, O.; Arcangeli, A.; Hancox, J. C.; Witchel, H. J. Blockade of HERG potassium currents by fluvoxamine: incomplete attenuation by S6 mutations at F656 or Y652 Br. J. Pharmacol. 2003, 139 (5) 887-98 (Pubitemid 36877388)
-
(2003)
British Journal of Pharmacology
, vol.139
, Issue.5
, pp. 887-898
-
-
Milnes, J.T.1
Crociani, O.2
Arcangeli, A.3
Hancox, J.C.4
Witchel, H.J.5
-
23
-
-
6944235879
-
The low-potency, voltage-dependent herg blocker propafenone - Molecular determinants and drug trapping
-
DOI 10.1124/mol.104.001743
-
Witchel, H. J.; Dempsey, C. E.; Sessions, R. B.; Perry, M.; Milnes, J. T.; Hancox, J. C.; Mitcheson, J. S. The low-potency, voltage-dependent HERG blocker propafenone - molecular determinants and drug trapping Mol. Pharmacol. 2004, 66 (5) 1201-12 (Pubitemid 39411060)
-
(2004)
Molecular Pharmacology
, vol.66
, Issue.5
, pp. 1201-1212
-
-
Witchel, H.J.1
Dempsey, C.E.2
Sessions, R.B.3
Perry, M.4
Milnes, J.T.5
Hancox, J.C.6
Mitcheson, J.S.7
-
24
-
-
0034914537
-
+ channels by vesnarinone
-
Kamiya, K.; Mitcheson, J. S.; Yasui, K.; Kodama, I.; Sanguinetti, M. C. Open channel block of HERG K(+) channels by vesnarinone Mol. Pharmacol. 2001, 60 (2) 244-53 (Pubitemid 32678288)
-
(2001)
Molecular Pharmacology
, vol.60
, Issue.2
, pp. 244-253
-
-
Kamiya, K.1
Mitcheson, J.S.2
Yasui, K.3
Kodama, I.4
Sanguinetti, M.C.5
-
25
-
-
0033952902
-
Molecular determinant of high-affinity dofetilide binding to HERG1 expressed in Xenopus oocytes: Involvement of S6 sites
-
Lees-Miller, J. P.; Duan, Y.; Teng, G. Q.; Duff, H. J. Molecular determinant of high-affinity dofetilide binding to HERG1 expressed in Xenopus oocytes: involvement of S6 sites Mol. Pharmacol. 2000, 57 (2) 367-74 (Pubitemid 30084514)
-
(2000)
Molecular Pharmacology
, vol.57
, Issue.2
, pp. 367-374
-
-
Lees-Miller, J.P.1
Duan, Y.2
Teng, G.Q.3
Duff, H.J.4
-
26
-
-
0038407463
-
Voltage-dependent profile of human ether-a-go-go-related gene channel block is influenced by a single residue in the S6 transmembrane domain
-
DOI 10.1124/mol.63.5.1051
-
Sanchez-Chapula, J. A.; Ferrer, T.; Navarro-Polanco, R. A.; Sanguinetti, M. C. Voltage-dependent profile of human ether-a-go-go-related gene channel block is influenced by a single residue in the S6 transmembrane domain Mol. Pharmacol. 2003, 63 (5) 1051-8 (Pubitemid 36529923)
-
(2003)
Molecular Pharmacology
, vol.63
, Issue.5
, pp. 1051-1058
-
-
Sanchez-Chapula, J.A.1
Ferrer, T.2
Navarro-Polanco, R.A.3
Sanguinetti, M.C.4
-
27
-
-
34047134980
-
Development, interpretation and temporal evaluation of a global QSAR of hERG electrophysiology screening data
-
DOI 10.1007/s10822-006-9095-6
-
Gavaghan, C. L.; Arnby, C. H.; Blomberg, N.; Strandlund, G.; Boyer, S. Development, interpretation and temporal evaluation of a global QSAR of hERG electrophysiology screening data J. Comput.-Aided Mol. Des. 2007, 21 (4) 189-206 (Pubitemid 46510843)
-
(2007)
Journal of Computer-Aided Molecular Design
, vol.21
, Issue.4
, pp. 189-206
-
-
Gavaghan, C.L.1
Arnby, C.H.2
Blomberg, N.3
Strandlund, G.4
Boyer, S.5
-
28
-
-
0038487659
-
Prediction of hERG potassium channel affinity by traditional and hologram QSAR methods
-
DOI 10.1016/S0960-894X(03)00492-X
-
Keseru, G. M. Prediction of hERG potassium channel affinity by traditional and hologram qSAR methods Bioorg. Med. Chem. Lett. 2003, 13 (16) 2773-2775 (Pubitemid 36851568)
-
(2003)
Bioorganic and Medicinal Chemistry Letters
, vol.13
, Issue.16
, pp. 2773-2775
-
-
Keseru, G.M.1
-
29
-
-
33646487003
-
An accurate and interpretable Bayesian classification model for prediction of hERG liability
-
DOI 10.1002/cmdc.200500047
-
Sun, H. An accurate and interpretable Bayesian classification model for prediction of hERG liability ChemMedChem 2006, 1 (3) 315-322 (Pubitemid 43700291)
-
(2006)
ChemMedChem
, vol.1
, Issue.3
, pp. 315-322
-
-
Sun, H.1
-
30
-
-
14544268139
-
+ channel blockade: Current knowledge and strategies for the early prediction during drug development
-
DOI 10.1002/med.20019
-
Recanatini, M.; Poluzzi, E.; Masetti, M.; Cavalli, A.; De Ponti, F. QT prolongation through hERG K(+) channel blockade: current knowledge and strategies for the early prediction during drug development Med. Res. Rev. 2005, 25 (2) 133-66 (Pubitemid 40299844)
-
(2005)
Medicinal Research Reviews
, vol.25
, Issue.2
, pp. 133-166
-
-
Recanatini, M.1
Poluzzi, E.2
Masetti, M.3
Cavalli, A.4
De Ponti, F.5
-
31
-
-
0038743107
-
Characterization of HERG potassium channel inhibition using CoMSiA 3D QSAR and homology modeling approaches
-
DOI 10.1016/S0960-894X(03)00196-3
-
Pearlstein, R. A.; Vaz, R. J.; Kang, J.; Chen, X.-L.; Preobrazhenskaya, M.; Shchekotikhin, A. E.; Korolev, A. M.; Lysenkova, L. N.; Miroshnikova, O. V.; Hendrix, J.; Rampe, D. Characterization of HERG potassium channel inhibition using CoMSiA 3D QSAR and homology modeling approaches Bioorg. Med. Chem. Lett. 2003, 13 (10) 1829-1835 (Pubitemid 36561175)
-
(2003)
Bioorganic and Medicinal Chemistry Letters
, vol.13
, Issue.10
, pp. 1829-1835
-
-
Pearlstein, R.A.1
Vaz, R.J.2
Kang, J.3
Chen, X.-L.4
Preobrazhenskaya, M.5
Shchekotikhin, A.E.6
Korolev, A.M.7
Lysenkova, L.N.8
Miroshnikova, O.V.9
Hendrix, J.10
Rampe, D.11
-
32
-
-
33747505086
-
Insights for human ether-a-go-go-related gene potassium channel inhibition using recursive partitioning and Kohonen and Sammon mapping techniques
-
DOI 10.1021/jm060076r
-
Ekins, S.; Balakin, K. V.; Savchuk, N.; Ivanenkov, Y. Insights for Human Ether-a-Go-Go-Related Gene Potassium Channel Inhibition Using Recursive Partitioning and Kohonen and Sammon Mapping Techniques J. Med. Chem. 2006, 49 (17) 5059-5071 (Pubitemid 44260203)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.17
, pp. 5059-5071
-
-
Ekins, S.1
Balakin, K.V.2
Savchuk, N.3
Ivanenkov, Y.4
-
33
-
-
38549151817
-
DrugBank: A knowledgebase for drugs, drug actions and drug targets
-
DATABASE ISS
-
Wishart, D. S.; Knox, C.; Guo, A. C.; Cheng, D.; Shrivastava, S.; Tzur, D.; Gautam, B.; Hassanali, M. DrugBank: a knowledgebase for drugs, drug actions and drug targets Nucleic Acids Res. 2008, 36 (Database Iss) D901-D906
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Cheng, D.4
Shrivastava, S.5
Tzur, D.6
Gautam, B.7
Hassanali, M.8
-
34
-
-
0027025790
-
An overview of class III electrophysiological agents: A new generation of antiarrhythmic therapy
-
Morgan, T. K., Jr.; Sullivan, M. E. An overview of class III electrophysiological agents: a new generation of antiarrhythmic therapy Prog. Med. Chem. 1992, 29, 65-108
-
(1992)
Prog. Med. Chem.
, vol.29
, pp. 65-108
-
-
Morgan Jr., T.K.1
Sullivan, M.E.2
-
35
-
-
0042355453
-
Rational selection of training and test sets for the development of validated QSAR models
-
DOI 10.1023/A:1025386326946
-
Golbraikh, A.; Shen, M.; Xiao, Z.; Xiao, Y.-D.; Lee, K.-H.; Tropsha, A. Rational selection of training and test sets for the development of validated QSAR models J. Comput.-Aided Mol. Des. 2003, 17 (2-4) 241-253 (Pubitemid 37062785)
-
(2003)
Journal of Computer-Aided Molecular Design
, vol.17
, Issue.2-4
, pp. 241-253
-
-
Golbraikh, A.1
Shen, M.2
Xiao, Z.3
Xiao, Y.-D.4
Lee, K.-H.5
Tropsha, A.6
-
36
-
-
69949181643
-
Computational modeling of novel inhibitors targeting the Akt pleckstrin homology domain
-
Du-Cuny, L.; Song, Z.; Moses, S.; Powis, G.; Mash, E. A.; Meuillet, E. J.; Zhang, S. Computational modeling of novel inhibitors targeting the Akt pleckstrin homology domain Bioorg. Med. Chem. 2009, 17 (19) 6983-6992
-
(2009)
Bioorg. Med. Chem.
, vol.17
, Issue.19
, pp. 6983-6992
-
-
Du-Cuny, L.1
Song, Z.2
Moses, S.3
Powis, G.4
Mash, E.A.5
Meuillet, E.J.6
Zhang, S.7
-
37
-
-
0003332305
-
-
Vol. Chemometrics
-
Sharaf, M. A.; Illman, D. L.; Kowalski, B. R. Chemical Analysis, 1986; Vol. 82: Chemometrics, p 332.
-
(1986)
Chemical Analysis
, vol.82
, pp. 332
-
-
Sharaf, M.A.1
Illman, D.L.2
Kowalski, B.R.3
-
38
-
-
33750321978
-
A novel Automated Lazy Learning QSAR (ALL-QSAR) approach: Method development, applications, and virtual screening of chemical databases using validated ALL-QSAR models
-
DOI 10.1021/ci060132x
-
Zhang, S.; Golbraikh, A.; Oloff, S.; Kohn, H.; Tropsha, A. A Novel Automated Lazy Learning QSAR (ALL-QSAR) Approach: Method Development, Applications, and Virtual Screening of Chemical Databases Using Validated ALL-QSAR Models J. Chem. Inf. Model. 2006, 46 (5) 1984-1995 (Pubitemid 44625970)
-
(2006)
Journal of Chemical Information and Modeling
, vol.46
, Issue.5
, pp. 1984-1995
-
-
Zhang, S.1
Golbraikh, A.2
Oloff, S.3
Kohn, H.4
Tropsha, A.5
-
39
-
-
0000378338
-
Novel variable selection quantitative structure-property relationship approach based on the K-nearest-neighbor principle
-
Zheng, W.; Tropsha, A. Novel variable selection quantitative structure-property relationship approach based on the K-nearest-neighbor principle J. Chem. Inf. Comput. Sci. 2000, 40 (1) 185-194
-
(2000)
J. Chem. Inf. Comput. Sci.
, vol.40
, Issue.1
, pp. 185-194
-
-
Zheng, W.1
Tropsha, A.2
-
40
-
-
4544303784
-
Torsadogenic cardiotoxicity of antipsychotic drugs: A structural feature, potentially involved in the interaction with cardiac HERG potassium channels
-
Testai, L.; Bianucci, A. M.; Massarelli, I.; Breschi, M. C.; Martinotti, E.; Calderone, V. Torsadogenic cardiotoxicity of antipsychotic drugs: A structural feature, potentially involved in the interaction with cardiac HERG potassium channels Curr. Med. Chem. 2004, 11 (20) 2691-2706 (Pubitemid 39255557)
-
(2004)
Current Medicinal Chemistry
, vol.11
, Issue.20
, pp. 2691-2706
-
-
Testai, L.1
Bianucci, A.M.2
Massarelli, I.3
Breschi, M.C.4
Martinotti, E.5
Calderone, V.6
-
41
-
-
31344436204
-
Synthesis and SAR of 1,2-trans-(1-hydroxy-3-phenylprop-1-yl)cyclopentane carboxamide derivatives, a new class of sodium channel blockers
-
DOI 10.1016/j.bmcl.2005.11.051, PII S0960894X05014782
-
Ok, D.; Li, C.; Abbadie, C.; Felix, J. P.; Fisher, M. H.; Garcia, M. L.; Kaczorowski, G. J.; Lyons, K. A.; Martin, W. J.; Priest, B. T.; Smith, M. M.; Williams, B. S.; Wyvratt, M. J.; Parsons, W. H. Synthesis and SAR of 1,2-trans-(1-hydroxy-3-phenylprop-1-yl)cyclopentane carboxamide derivatives, a new class of sodium channel blockers Bioorg. Med. Chem. Lett. 2006, 16 (5) 1358-1361 (Pubitemid 43143022)
-
(2006)
Bioorganic and Medicinal Chemistry Letters
, vol.16
, Issue.5
, pp. 1358-1361
-
-
Ok, D.1
Li, C.2
Abbadie, C.3
Felix, J.P.4
Fisher, M.H.5
Garcia, M.L.6
Kaczorowski, G.J.7
Lyons, K.A.8
Martin, W.J.9
Priest, B.T.10
Smith, M.M.11
Williams, B.S.12
Wyvratt, M.J.13
Parsons, W.H.14
-
42
-
-
31344467295
-
Potent 2-[(pyrimidin-4-yl)amine}-1,3-thiazole-5-carbonitrile-based inhibitors of VEGFR-2 (KDR) kinase
-
DOI 10.1016/j.bmcl.2005.11.089, PII S0960894X05015179
-
Sisko, J. T.; Tucker, T. J.; Bilodeau, M. T.; Buser, C. A.; Ciecko, P. A.; Coll, K. E.; Fernandes, C.; Gibbs, J. B.; Koester, T. J.; Kohl, N.; Lynch, J. J.; Mao, X.; McLoughlin, D.; Miller-Stein, C. M.; Rodman, L. D.; Rickert, K. W.; Sepp-Lorenzino, L.; Shipman, J. M.; Thomas, K. A.; Wong, B. K.; Hartman, G. D. Potent 2-[(pyrimidin-4-yl)amine}-1,3-thiazole-5-carbonitrile-based inhibitors of VEGFR-2 (KDR) kinase Bioorg. Med. Chem. Lett. 2006, 16 (5) 1146-1150 (Pubitemid 43142980)
-
(2006)
Bioorganic and Medicinal Chemistry Letters
, vol.16
, Issue.5
, pp. 1146-1150
-
-
Sisko, J.T.1
Tucker, T.J.2
Bilodeau, M.T.3
Buser, C.A.4
Ciecko, P.A.5
Coll, K.E.6
Fernandes, C.7
Gibbs, J.B.8
Koester, T.J.9
Kohl, N.10
Lynch, J.J.11
Mao, X.12
McLoughlin, D.13
Miller-Stein, C.M.14
Rodman, L.D.15
Rickert, K.W.16
Sepp-Lorenzino, L.17
Shipman, J.M.18
Thomas, K.A.19
Wong, B.K.20
Hartman, G.D.21
more..
-
43
-
-
12444292790
-
Optimization of a tertiary alcohol series of phosphodiesterase-4 (PDE4) inhibitors: Structure-activity relationship related to PDE4 inhibition and human ether-a-go-go related gene potassium channel binding affinity
-
DOI 10.1021/jm0204542
-
Friesen, R. W.; Ducharme, Y.; Ball, R. G.; Blouin, M.; Boulet, L.; Cote, B.; Frenette, R.; Girard, M.; Guay, D.; Huang, Z.; Jones, T. R.; Laliberte, F.; Lynch, J. J.; Mancini, J.; Martins, E.; Masson, P.; Muise, E.; Pon, D. J.; Siegl, P. K. S.; Styhler, A.; Tsou, N. N.; Turner, M. J.; Young, R. N.; Girard, Y. Optimization of a Tertiary Alcohol Series of Phosphodiesterase-4 (PDE4) Inhibitors: Structure-Activity Relationship Related to PDE4 Inhibition and Human Ether-a-go-go Related Gene Potassium Channel Binding Affinity J. Med. Chem. 2003, 46 (12) 2413-2426 (Pubitemid 36637925)
-
(2003)
Journal of Medicinal Chemistry
, vol.46
, Issue.12
, pp. 2413-2426
-
-
Friesen, R.W.1
Ducharme, Y.2
Ball, R.G.3
Blouin, M.4
Boulet, L.5
Cote, B.6
Frenette, R.7
Girard, M.8
Guay, D.9
Huang, Z.10
Jones, T.R.11
Laliberte, F.12
Lynch, J.J.13
Mancini, J.14
Martins, E.15
Masson, P.16
Muise, E.17
Pon, D.J.18
Siegl, P.K.S.19
Styhler, A.20
Tsou, N.N.21
Turner, M.J.22
Young, R.N.23
Girardt, Y.24
more..
-
44
-
-
0035837073
-
Flexible alignment of small molecules
-
DOI 10.1021/jm0002634
-
Labute, P.; Williams, C.; Feher, M.; Sourial, E.; Schmidt, J. M. Flexible Alignment of Small Molecules J. Med. Chem. 2001, 44 (10) 1483-1490 (Pubitemid 32852192)
-
(2001)
Journal of Medicinal Chemistry
, vol.44
, Issue.10
, pp. 1483-1490
-
-
Labute, P.1
Williams, C.2
-
45
-
-
0028380643
-
CAVEAT: A program to facilitate the design of organic molecules
-
Lauri, G.; Bartlett, P. A. CAVEAT: a program to facilitate the design of organic molecules J. Comput.-Aided Mol. Des. 1994, 8 (1) 51-66
-
(1994)
J. Comput.-Aided Mol. Des.
, vol.8
, Issue.1
, pp. 51-66
-
-
Lauri, G.1
Bartlett, P.A.2
-
46
-
-
0032478818
-
+ conduction and selectivity
-
DOI 10.1126/science.280.5360.69
-
Doyle, D. A.; Morais Cabral, J.; Pfuetzner, R. A.; Kuo, A.; Gulbis, J. M.; Cohen, S. L.; Chait, B. T.; MacKinnon, R. The structure of the potassium channel: molecular basis of K+ conduction and selectivity Science 1998, 280 (5360) 69-77 (Pubitemid 28169082)
-
(1998)
Science
, vol.280
, Issue.5360
, pp. 69-77
-
-
Doyle, D.A.1
Cabral, J.M.2
Pfuetzner, R.A.3
Kuo, A.4
Gulbis, J.M.5
Cohen, S.L.6
Chait, B.T.7
MacKinnon, R.8
-
47
-
-
0037198626
-
Crystal structure and mechanism of a calcium-gated potassium channel
-
DOI 10.1038/417515a
-
Jiang, Y.; Lee, A.; Chen, J.; Cadene, M.; Chait Brian, T.; MacKinnon, R. Crystal structure and mechanism of a calcium-gated potassium channel Nature 2002, 417 (6888) 515-22 (Pubitemid 34595912)
-
(2002)
Nature
, vol.417
, Issue.6888
, pp. 515-522
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
48
-
-
82355177354
-
-
2.0u66; The University of Virginia: Charlottesville, VA.
-
Pearson, W. R. ALIGN, 2.0u66; The University of Virginia: Charlottesville, VA, 1997.
-
(1997)
ALIGN
-
-
Pearson, W.R.1
-
49
-
-
0037198625
-
The open pore conformation of potassium channels
-
DOI 10.1038/417523a
-
Jiang, Y.; Lee, A.; Chen, J.; Cadene, M.; Chait, B. T.; MacKinnon, R. The open pore conformation of potassium channels Nature (London, U. K.) 2002, 417 (6888) 523-526 (Pubitemid 34595913)
-
(2002)
Nature
, vol.417
, Issue.6888
, pp. 523-526
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
50
-
-
82355177355
-
-
[9v6], UCSF: San Francisco, CA.
-
MODELLER [9v6], UCSF: San Francisco, CA, 2009.
-
(2009)
MODELLER
-
-
-
51
-
-
0031576989
-
Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: A new homology modeling tool
-
DOI 10.1006/jmbi.1997.0926
-
Bower, M. J.; Cohen, F. E.; Dunbrack, R. L., Jr. Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool J. Mol. Biol. 1997, 267 (5) 1268-1282 (Pubitemid 27192637)
-
(1997)
Journal of Molecular Biology
, vol.267
, Issue.5
, pp. 1268-1282
-
-
Bower, M.J.1
Cohen, F.E.2
Dunbrack Jr., R.L.3
-
52
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
DOI 10.1107/S0907444904019158
-
Emsley, P.; Cowtan, K. Coot: model-building tools for molecular graphics Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, D60 (12, Pt. 1) 2126-2132 (Pubitemid 41742764)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.12
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
53
-
-
23444454552
-
The Amber biomolecular simulation programs
-
DOI 10.1002/jcc.20290
-
Case David, A.; Cheatham Thomas, E., 3rd; Darden, T.; Gohlke, H.; Luo, R.; Merz Kenneth, M., Jr.; Onufriev, A.; Simmerling, C.; Wang, B.; Woods Robert, J. The Amber biomolecular simulation programs J. Comput. Chem. 2005, 26 (16) 1668-88 (Pubitemid 43076180)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz Jr., K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
54
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang, J. M.; Cieplak, P.; Kollman, P. A. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 2000, 21 (12) 1049-1074
-
(2000)
J. Comput. Chem.
, vol.21
, Issue.12
, pp. 1049-1074
-
-
Wang, J.M.1
Cieplak, P.2
Kollman, P.A.3
-
55
-
-
35248857005
-
Molecular mechanism of the sea anemone toxin ShK recognizing the Kv1.3 channel explored by docking and molecular dynamic simulations
-
Jin, L.; Wu, Y. Molecular mechanism of the sea anemone toxin ShK recognizing the Kv1.3 channel explored by docking and molecular dynamic simulations J. Chem. Inf. Model. 2007, 47 (5) 1967-72
-
(2007)
J. Chem. Inf. Model.
, vol.47
, Issue.5
, pp. 1967-1972
-
-
Jin, L.1
Wu, Y.2
-
56
-
-
82355184126
-
-
[3.2], CCDC: Cambridge, U.K.
-
GOLD [3.2], CCDC: Cambridge, U.K., 2007.
-
(2007)
GOLD
-
-
-
57
-
-
13844254976
-
Predictive in silico modeling for hERG channel blockers
-
DOI 10.1016/S1359-6446(04)03278-7, PII S1359644604032787
-
Aronov, A. M. Predictive in silico modeling for hERG channel blockers Drug Discovery Today 2005, 10 (2) 149-55 (Pubitemid 40247813)
-
(2005)
Drug Discovery Today
, vol.10
, Issue.2
, pp. 149-155
-
-
Aronov, A.M.1
-
58
-
-
60849135109
-
Structure-based virtual screening for identification of novel 11beta-HSD1 inhibitors
-
Yang, H.; Shen, Y.; Chen, J.; Jiang, Q.; Leng, Y.; Shen, J. Structure-based virtual screening for identification of novel 11beta-HSD1 inhibitors Eur. J. Med. Chem. 2009, 44 (3) 1167-71
-
(2009)
Eur. J. Med. Chem.
, vol.44
, Issue.3
, pp. 1167-1171
-
-
Yang, H.1
Shen, Y.2
Chen, J.3
Jiang, Q.4
Leng, Y.5
Shen, J.6
-
59
-
-
25144517646
-
Integrated Modeling Program, Applied Chemical Theory (IMPACT)
-
DOI 10.1002/jcc.20292
-
Banks, J. L.; Beard, H. S.; Cao, Y.; Cho, A. E.; Damm, W.; Farid, R.; Felts, A. K.; Halgren, T. A.; Mainz, D. T.; Maple, J. R.; Murphy, R.; Philipp, D. M.; Repasky, M. P.; Zhang, L. Y.; Berne, B. J.; Friesner, R. A.; Gallicchio, E.; Levy, R. M. Integrated Modeling Program, Applied Chemical Theory (IMPACT) J. Comput. Chem. 2005, 26 (16) 1752-80 (Pubitemid 43076184)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1752-1780
-
-
Banks, J.L.1
Beard, H.S.2
Cao, Y.3
Cho, A.E.4
Damm, W.5
Farid, R.6
Felts, A.K.7
Halgren, T.A.8
Mainz, D.T.9
Maple, J.R.10
Murphy, R.11
Philipp, D.M.12
Repasky, M.P.13
Zhang, L.Y.14
Berne, B.J.15
Friesner, R.A.16
Gallicchio, E.17
Levy, R.M.18
-
60
-
-
0003826721
-
-
Umetrics Academy: Umea, Sweden.
-
Eriksson, L.; Johansson, N.; Kettaneh-Wold, N.; Wold, S. Multi- and Megavariate Data Analysis: Principles and Applications. Umetrics Academy: Umea, Sweden, 1999.
-
(1999)
Multi- And Megavariate Data Analysis: Principles and Applications
-
-
Eriksson, L.1
Johansson, N.2
Kettaneh-Wold, N.3
Wold, S.4
-
61
-
-
13844254976
-
Predictive in silico modeling for hERG channel blockers
-
DOI 10.1016/S1359-6446(04)03278-7, PII S1359644604032787
-
Aronov, A. M. Predictive in silico modeling for hERG channel blockers Drug Discovery Today 2005, 10 (2) 149-155 (Pubitemid 40247813)
-
(2005)
Drug Discovery Today
, vol.10
, Issue.2
, pp. 149-155
-
-
Aronov, A.M.1
-
62
-
-
0037419785
-
Novel PI analogues selectively block activation of the pro-survival serine/threonine kinase Akt
-
DOI 10.1021/ja0285159
-
Kozikowski, A. P.; Sun, H.; Brognard, J.; Dennis, P. A. Novel PI Analogues Selectively Block Activation of the Pro-survival Serine/Threonine Kinase Akt J. Am. Chem. Soc. 2003, 125 (5) 1144-1145 (Pubitemid 36159806)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.5
, pp. 1144-1145
-
-
Kozikowski, A.P.1
Sun, H.2
Brognard, J.3
Dennis, P.A.4
-
63
-
-
12144289984
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
-
DOI 10.1021/jm0306430
-
Friesner Richard, A.; Banks Jay, L.; Murphy Robert, B.; Halgren Thomas, A.; Klicic Jasna, J.; Mainz Daniel, T.; Repasky Matthew, P.; Knoll Eric, H.; Shelley, M.; Perry Jason, K.; Shaw David, E.; Francis, P.; Shenkin Peter, S. Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy J. Med. Chem. 2004, 47 (7) 1739-49 (Pubitemid 38380917)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.7
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
65
-
-
0030058762
-
Class III antiarrhythmic drugs block HERG, a human cardiac delayed rectifier K+ channel. Open-channel block by methanesulfonanilides
-
Spector, P. S.; Curran, M. E.; Keating, M. T.; Sanguinetti, M. C. Class III antiarrhythmic drugs block HERG, a human cardiac delayed rectifier K+ channel. Open-channel block by methanesulfonanilides Circulation research 1996, 78 (3) 499-503
-
(1996)
Circulation Research
, vol.78
, Issue.3
, pp. 499-503
-
-
Spector, P.S.1
Curran, M.E.2
Keating, M.T.3
Sanguinetti, M.C.4
-
66
-
-
0034677902
-
+ channel-related long-QT syndrome: Altered gating and selectivity in the HERG1 N629D mutant
-
Lees-Miller, J. P.; Duan, Y.; Teng, G. Q.; Thorstad, K.; Duff, H. J. Novel gain-of-function mechanism in K(+) channel-related long-QT syndrome: altered gating and selectivity in the HERG1 N629D mutant Circ. Res. 2000, 86 (5) 507-13 (Pubitemid 30165041)
-
(2000)
Circulation Research
, vol.86
, Issue.5
, pp. 507-513
-
-
Lees-Miller, J.P.1
Duan, Y.2
Teng, G.Q.3
Thorstad, K.4
Duff, H.J.5
-
67
-
-
0037126062
-
Position of aromatic residues in the S6 domain, not inactivation, dictates cisapride sensitivity of HERG and eag potassium channels
-
Chen, J.; Seebohm, G.; Sanguinetti Michael, C. Position of aromatic residues in the S6 domain, not inactivation, dictates cisapride sensitivity of HERG and eag potassium channels Proc. Natl. Acad. Sci. U.S.A. 2002, 99 (19) 12461-6
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, Issue.19
, pp. 12461-12466
-
-
Chen, J.1
Seebohm, G.2
Sanguinetti Michael, C.3
-
68
-
-
82355184127
-
-
Umetrics AB: Umea, Sweden.
-
SIMCA, Umetrics AB: Umea, Sweden, 2011.
-
(2011)
SIMCA
-
-
-
69
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.; Thornton, J. M. PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 1993, 26 (2) 283-91
-
(1993)
J. Appl. Crystallogr.
, vol.26
, Issue.2
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
70
-
-
3342988006
-
Structural determinants of HERG channel block by clofilium and ibutilide
-
DOI 10.1124/mol.104.000117
-
Perry, M.; De Groot, M. J.; Helliwell, R.; Leishman, D.; Tristani-Firouzi, M.; Sanguinetti, M. C.; Mitcheson, J. Structural determinants of HERG channel block by clofilium and ibutilide Mol. Pharmacol. 2004, 66 (2) 240-249 (Pubitemid 38989480)
-
(2004)
Molecular Pharmacology
, vol.66
, Issue.2
, pp. 240-249
-
-
Perry, M.1
De Groot, M.J.2
Helliwell, R.3
Leishman, D.4
Tristani-Firouzi, M.5
Sanguinetti, M.C.6
Mitcheson, J.7
-
71
-
-
31044447745
-
Drug binding interactions in the inner cavity of hERG channels: Molecular insights from structure-activity relationships of clofilium and ibutilide analogs
-
DOI 10.1124/mol.105.016741
-
Perry, M.; Stansfeld, P. J.; Leaney, J.; Wood, C.; de Groot, M. J.; Leishman, D.; Sutcliffe, M. J.; Mitcheson, J. S. Drug binding interactions in the inner cavity of hERG channels: molecular insights from structure-activity relationships of clofilium and ibutilide analogs Mol. Pharmacol. 2006, 69 (2) 509-519 (Pubitemid 43121948)
-
(2006)
Molecular Pharmacology
, vol.69
, Issue.2
, pp. 509-519
-
-
Perry, M.1
Stansfeld, P.J.2
Leaney, J.3
Wood, C.4
De Groot, M.J.5
Leishman, D.6
Sutcliffe, M.J.7
Mitcheson, J.S.8
|