Effects of short read quality and quantity on a de novo vertebrate transcriptome assembly

Comparative Biochemistry and Physiology - C Toxicology and Pharmacology

Volumn 155, Issue 1, 2012, Pages 95-101

  Garcia, T I ^a   Shen, Y ^a   Catchen, J ^b   Amores, A ^b   Schartl, M ^c   Postlethwait, J ^b   Walter, R B ^a  

^a Texas State University   (United States)

^b UNIVERSITY OF OREGON   (United States)

^c UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

Assembly; NGS; Phred; Quality; Quantity; Short read; Velvet

Indexed keywords

TRANSCRIPTOME;

AUTOMATION; CONFERENCE PAPER; EXPRESSED SEQUENCE TAG; FISH; GENE SEQUENCE; GENE TECHNOLOGY; NONHUMAN; PRIORITY JOURNAL; VERTEBRATE;

VERTEBRATA;

EID: 81855204907     PISSN: 15320456     EISSN: 18781659     Source Type: Journal    
DOI: 10.1016/j.cbpc.2011.05.012     Document Type: Conference Paper

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