-
1
-
-
53849133821
-
Evolutionary history and phylogeography of human viruses
-
E.C. Holmes Evolutionary history and phylogeography of human viruses Annu Rev Microbiol 62 2008 307 328
-
(2008)
Annu Rev Microbiol
, vol.62
, pp. 307-328
-
-
Holmes, E.C.1
-
2
-
-
67651100815
-
Evolutionary analysis of the dynamics of viral infectious disease
-
O.G. Pybus, and A. Rambaut Evolutionary analysis of the dynamics of viral infectious disease Nat Rev Genet 10 2009 540 550
-
(2009)
Nat Rev Genet
, vol.10
, pp. 540-550
-
-
Pybus, O.G.1
Rambaut, A.2
-
3
-
-
70350476886
-
Discovering the phylodynamics of RNA viruses
-
E.C. Holmes, and B.T. Grenfell Discovering the phylodynamics of RNA viruses PLoS Comput Biol 5 2009 e1000505
-
(2009)
PLoS Comput Biol
, vol.5
, pp. 1000505
-
-
Holmes, E.C.1
Grenfell, B.T.2
-
5
-
-
77957923165
-
Three roads diverged? Routes to phylogeographic inference
-
E.W. Bloomquist, P. Lemey, and M.A. Suchard Three roads diverged? Routes to phylogeographic inference Trends Ecol Evol 25 2010 626 632
-
(2010)
Trends Ecol Evol
, vol.25
, pp. 626-632
-
-
Bloomquist, E.W.1
Lemey, P.2
Suchard, M.A.3
-
6
-
-
58249114651
-
A likelihood framework for estimating phylogeographic history on a continuous landscape
-
A.R. Lemmon, and E.M. Lemmon A likelihood framework for estimating phylogeographic history on a continuous landscape Syst Biol 57 2008 544 561
-
(2008)
Syst Biol
, vol.57
, pp. 544-561
-
-
Lemmon, A.R.1
Lemmon, E.M.2
-
7
-
-
39049089063
-
Inferring dispersal: A Bayesian approach to phylogeny-based island biogeography, with special reference to the Canary Islands
-
I. Sanmartin, P. van der Mark, and F. Ronquist Inferring dispersal: a Bayesian approach to phylogeny-based island biogeography, with special reference to the Canary Islands J Biogeogr 35 2008 428 449
-
(2008)
J Biogeogr
, vol.35
, pp. 428-449
-
-
Sanmartin, I.1
Van Der Mark, P.2
Ronquist, F.3
-
8
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
A.J. Drummond, and A. Rambaut BEAST: Bayesian evolutionary analysis by sampling trees BMC Evol Biol 7 2007 214
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
10
-
-
77955011960
-
Phylogeography takes a relaxed random walk in continuous space and time
-
P. Lemey, A. Rambaut, J.J. Welch, and M.A. Suchard Phylogeography takes a relaxed random walk in continuous space and time Mol Biol Evol 27 2010 1877 1885
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1877-1885
-
-
Lemey, P.1
Rambaut, A.2
Welch, J.J.3
Suchard, M.A.4
-
11
-
-
41649086532
-
Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies
-
M. Salemi, B.R. Burkhardt, R.R. Gray, G. Ghaffari, J.W. Sleasman, and M.M. Goodenow Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies PLoS One 2 2007 e950
-
(2007)
PLoS One
, vol.2
, pp. 950
-
-
Salemi, M.1
Burkhardt, B.R.2
Gray, R.R.3
Ghaffari, G.4
Sleasman, J.W.5
Goodenow, M.M.6
-
12
-
-
23844484143
-
Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS
-
M. Salemi, S.L. Lamers, S. Yu, T. de Oliveira, W.M. Fitch, and M.S. McGrath Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS J Virol 79 2005 11343 11352
-
(2005)
J Virol
, vol.79
, pp. 11343-11352
-
-
Salemi, M.1
Lamers, S.L.2
Yu, S.3
De Oliveira, T.4
Fitch, W.M.5
McGrath, M.S.6
-
13
-
-
0031932434
-
Genetic diversity and tissue compartmentalization of the hepatitis C virus genome in blood mononuclear cells, liver, and serum from chronic hepatitis C patients
-
S. Navas, J. Martin, J.A. Quiroga, I. Castillo, and V. Carreno Genetic diversity and tissue compartmentalization of the hepatitis C virus genome in blood mononuclear cells, liver, and serum from chronic hepatitis C patients J Virol 72 1998 1640 1646
-
(1998)
J Virol
, vol.72
, pp. 1640-1646
-
-
Navas, S.1
Martin, J.2
Quiroga, J.A.3
Castillo, I.4
Carreno, V.5
-
14
-
-
78650747895
-
Epidemiological and clinical consequences of within-host evolution
-
S. Alizon, F. Luciani, and R.R. Regoes Epidemiological and clinical consequences of within-host evolution Trends Microbiol 19 2010 24 32
-
(2010)
Trends Microbiol
, vol.19
, pp. 24-32
-
-
Alizon, S.1
Luciani, F.2
Regoes, R.R.3
-
15
-
-
51949109019
-
Cross-species virus transmission and the emergence of new epidemic diseases
-
C.R. Parrish, E.C. Holmes, D.M. Morens, E.C. Park, D.S. Burke, C.H. Calisher, C.A. Laughlin, L.J. Saif, and P. Daszak Cross-species virus transmission and the emergence of new epidemic diseases Microbiol Mol Biol Rev 72 2008 457 470
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 457-470
-
-
Parrish, C.R.1
Holmes, E.C.2
Morens, D.M.3
Park, E.C.4
Burke, D.S.5
Calisher, C.H.6
Laughlin, C.A.7
Saif, L.J.8
Daszak, P.9
-
16
-
-
0031975192
-
Human immunodeficiency virus type 1 populations in blood and semen
-
E.L. Delwart, J.I. Mullins, P. Gupta, G.H. Learn Jr., M. Holodniy, D. Katzenstein, B.D. Walker, and M.K. Singh Human immunodeficiency virus type 1 populations in blood and semen J Virol 72 1998 617 623
-
(1998)
J Virol
, vol.72
, pp. 617-623
-
-
Delwart, E.L.1
Mullins, J.I.2
Gupta, P.3
Learn, Jr.G.H.4
Holodniy, M.5
Katzenstein, D.6
Walker, B.D.7
Singh, M.K.8
-
17
-
-
3242732993
-
Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection
-
J.A. Fulcher, Y. Hwangbo, R. Zioni, D. Nickle, X. Lin, L. Heath, J.I. Mullins, L. Corey, and T. Zhu Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection J Virol 78 2004 7883 7893
-
(2004)
J Virol
, vol.78
, pp. 7883-7893
-
-
Fulcher, J.A.1
Hwangbo, Y.2
Zioni, R.3
Nickle, D.4
Lin, X.5
Heath, L.6
Mullins, J.I.7
Corey, L.8
Zhu, T.9
-
18
-
-
0242331608
-
HIV-1 in genital tract and plasma of women: Compartmentalization of viral sequences, coreceptor usage, and glycosylation
-
K.S. Kemal, B. Foley, H. Burger, K. Anastos, H. Minkoff, C. Kitchen, S.M. Philpott, W. Gao, E. Robison, and S. Holman HIV-1 in genital tract and plasma of women: compartmentalization of viral sequences, coreceptor usage, and glycosylation Proc Natl Acad Sci U S A 100 2003 12972 12977
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12972-12977
-
-
Kemal, K.S.1
Foley, B.2
Burger, H.3
Anastos, K.4
Minkoff, H.5
Kitchen, C.6
Philpott, S.M.7
Gao, W.8
Robison, E.9
Holman, S.10
-
19
-
-
13744260977
-
Semen-specific genetic characteristics of human immunodeficiency virus type 1 env
-
S.K. Pillai, B. Good, S.K. Pond, J.K. Wong, M.C. Strain, D.D. Richman, and D.M. Smith Semen-specific genetic characteristics of human immunodeficiency virus type 1 env J Virol 79 2005 1734 1742
-
(2005)
J Virol
, vol.79
, pp. 1734-1742
-
-
Pillai, S.K.1
Good, B.2
Pond, S.K.3
Wong, J.K.4
Strain, M.C.5
Richman, D.D.6
Smith, D.M.7
-
20
-
-
4344614606
-
HIV-1 compartmentalization in diverse leukocyte populations during antiretroviral therapy
-
S.J. Potter, P. Lemey, G. Achaz, C.B. Chew, A.M. Vandamme, D.E. Dwyer, and N.K. Saksena HIV-1 compartmentalization in diverse leukocyte populations during antiretroviral therapy J Leukoc Biol 76 2004 562 570
-
(2004)
J Leukoc Biol
, vol.76
, pp. 562-570
-
-
Potter, S.J.1
Lemey, P.2
Achaz, G.3
Chew, C.B.4
Vandamme, A.M.5
Dwyer, D.E.6
Saksena, N.K.7
-
21
-
-
78650222420
-
HIV-1 phylogenetic analysis shows HIV-1 transits through the meninges to brain and peripheral tissues
-
S.L. Lamers, R.R. Gray, M. Salemi, L.C. Huysentruyt, and M.S. McGrath HIV-1 phylogenetic analysis shows HIV-1 transits through the meninges to brain and peripheral tissues Infect Genet Evol 11 2011 31 37
-
(2011)
Infect Genet Evol
, vol.11
, pp. 31-37
-
-
Lamers, S.L.1
Gray, R.R.2
Salemi, M.3
Huysentruyt, L.C.4
McGrath, M.S.5
-
22
-
-
77949518476
-
Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma
-
M. Salemi, S.L. Lamers, L.C. Huysentruyt, D. Galligan, R.R. Gray, A. Morris, and M.S. McGrath Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma PLoS One 4 2009 e8153
-
(2009)
PLoS One
, vol.4
, pp. 8153
-
-
Salemi, M.1
Lamers, S.L.2
Huysentruyt, L.C.3
Galligan, D.4
Gray, R.R.5
Morris, A.6
McGrath, M.S.7
-
23
-
-
77956425857
-
Adaptation of HIV-1 envelope gp120 to humoral immunity at a population level
-
E.M. Bunnik, Z. Euler, M.R. Welkers, B.D.M. Boeser-Nunnonk, M.L. Grijsen, J.M. Prins, and H. Schuitemaker Adaptation of HIV-1 envelope gp120 to humoral immunity at a population level Nat Med 16 2010 995 997
-
(2010)
Nat Med
, vol.16
, pp. 995-997
-
-
Bunnik, E.M.1
Euler, Z.2
Welkers, M.R.3
Boeser-Nunnonk, B.D.M.4
Grijsen, M.L.5
Prins, J.M.6
Schuitemaker, H.7
-
24
-
-
33847044691
-
The evolution of epidemic influenza
-
M.I. Nelson, and E.C. Holmes The evolution of epidemic influenza Nat Rev Genet 8 2007 196 205
-
(2007)
Nat Rev Genet
, vol.8
, pp. 196-205
-
-
Nelson, M.I.1
Holmes, E.C.2
-
25
-
-
3142682239
-
Mapping the antigenic and genetic evolution of influenza virus
-
D.J. Smith, A.S. Lapedes, J.C. de Jong, T.M. Bestebroer, G.F. Rimmelzwaan, A.D. Osterhaus, and R.A. Fouchier Mapping the antigenic and genetic evolution of influenza virus Science 305 2004 371 376
-
(2004)
Science
, vol.305
, pp. 371-376
-
-
Smith, D.J.1
Lapedes, A.S.2
De Jong, J.C.3
Bestebroer, T.M.4
Rimmelzwaan, G.F.5
Osterhaus, A.D.6
Fouchier, R.A.7
-
26
-
-
34249938830
-
Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1
-
S. Zarate, S.L. Pond, P. Shapshak, and S.D. Frost Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1 J Virol 81 2007 6643 6651
-
(2007)
J Virol
, vol.81
, pp. 6643-6651
-
-
Zarate, S.1
Pond, S.L.2
Shapshak, P.3
Frost, S.D.4
-
27
-
-
79955417630
-
Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: Efficient hypothesis testing through hierarchical phylogenetic models
-
D. Edo-Matas, P. Lemey, J.A. Tom, C. Serna-Bolea, A.E. van den Blink, A.B. van't Wout, H. Schuitemaker, and M.A. Suchard Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models Mol Biol Evol 28 2010 1605 1616
-
(2010)
Mol Biol Evol
, vol.28
, pp. 1605-1616
-
-
Edo-Matas, D.1
Lemey, P.2
Tom, J.A.3
Serna-Bolea, C.4
Van Den Blink, A.E.5
Van'T Wout, A.B.6
Schuitemaker, H.7
Suchard, M.A.8
-
28
-
-
0242404116
-
Hierarchical phylogenetic models for analyzing multipartite sequence data
-
M.A. Suchard, C.M. Kitchen, J.S. Sinsheimer, and R.E. Weiss Hierarchical phylogenetic models for analyzing multipartite sequence data Syst Biol 52 2003 649 664
-
(2003)
Syst Biol
, vol.52
, pp. 649-664
-
-
Suchard, M.A.1
Kitchen, C.M.2
Sinsheimer, J.S.3
Weiss, R.E.4
-
29
-
-
78449237743
-
Phylodynamics and human-mediated dispersal of a zoonotic virus
-
C. Talbi, P. Lemey, M.A. Suchard, E. Abdelatif, M. Elharrak, N. Jalal, A. Faouzi, J.E. Echevarria, S. Vazquez Moron, and A. Rambaut Phylodynamics and human-mediated dispersal of a zoonotic virus PLoS Pathog 6 2010 e1001166
-
(2010)
PLoS Pathog
, vol.6
, pp. 1001166
-
-
Talbi, C.1
Lemey, P.2
Suchard, M.A.3
Abdelatif, E.4
Elharrak, M.5
Jalal, N.6
Faouzi, A.7
Echevarria, J.E.8
Vazquez Moron, S.9
Rambaut, A.10
-
30
-
-
79959859629
-
Spatial dynamics of human-origin H1 influenza A virus in North American swine
-
M.I. Nelson, P. Lemey, Y. Tan, A. Vincent, T. Tsan-Yuk Lam, S. Detmer, C. Viboud, M. Suchard, A. Rambaut, E.C. Holmes, and M. Gramer Spatial dynamics of human-origin H1 influenza A virus in North American swine PLoS Pathog 7 2011 e1002077
-
(2011)
PLoS Pathog
, vol.7
, pp. 1002077
-
-
Nelson, M.I.1
Lemey, P.2
Tan, Y.3
Vincent, A.4
Tsan-Yuk Lam, T.5
Detmer, S.6
Viboud, C.7
Suchard, M.8
Rambaut, A.9
Holmes, E.C.10
Gramer, M.11
-
31
-
-
80052462676
-
Reconstructing the history of Maize streak virus strain-A dispersal to reveal diversification hotspots and its origin in southern Africa
-
A.L. Monjane, G.W. Harkins, D.P. Martin, P. Lemey, P. Lefeuvre, D.N. Shepherd, S. Oluwafemi, M. Simuyandi, I. Zinga, and E.K. Komba Reconstructing the history of Maize streak virus strain-A dispersal to reveal diversification hotspots and its origin in southern Africa J Virol 85 2011 9623 9636
-
(2011)
J Virol
, vol.85
, pp. 9623-9636
-
-
Monjane, A.L.1
Harkins, G.W.2
Martin, D.P.3
Lemey, P.4
Lefeuvre, P.5
Shepherd, D.N.6
Oluwafemi, S.7
Simuyandi, M.8
Zinga, I.9
Komba, E.K.10
-
32
-
-
31444431866
-
The scaling laws of human travel
-
D. Brockmann, L. Hufnagel, and T. Geisel The scaling laws of human travel Nature 439 2006 462 465
-
(2006)
Nature
, vol.439
, pp. 462-465
-
-
Brockmann, D.1
Hufnagel, L.2
Geisel, T.3
-
33
-
-
84857691271
-
Phylodynamics of the HIV-1 CRF02-AG clade in Cameroon
-
10.1016/j.meegid.2011.04.028
-
N.R. Faria, M.A. Suchard, A. Abecasis, J.D. Sousa, N. Ndembi, I. Bonfim, R.J. Camacho, A.M. Vandamme, and P. Lemey Phylodynamics of the HIV-1 CRF02-AG clade in Cameroon Infect Genet Evol 2011 10.1016/j.meegid.2011.04.028
-
(2011)
Infect Genet Evol
-
-
Faria, N.R.1
Suchard, M.A.2
Abecasis, A.3
Sousa, J.D.4
Ndembi, N.5
Bonfim, I.6
Camacho, R.J.7
Vandamme, A.M.8
Lemey, P.9
-
34
-
-
79959834106
-
Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission
-
J. Raghwani, A. Rambaut, E.C. Holmes, V.T. Hang, T.T. Hien, J. Farrar, B. Wills, N.J. Lennon, B.W. Birren, and M.R. Henn Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission PLoS Pathog 7 2011 e1002064
-
(2011)
PLoS Pathog
, vol.7
, pp. 1002064
-
-
Raghwani, J.1
Rambaut, A.2
Holmes, E.C.3
Hang, V.T.4
Hien, T.T.5
Farrar, J.6
Wills, B.7
Lennon, N.J.8
Birren, B.W.9
Henn, M.R.10
-
35
-
-
45949106847
-
Influenza A H5N1 immigration is filtered out at some international borders
-
R.G. Wallace, and W.M. Fitch Influenza A H5N1 immigration is filtered out at some international borders PLoS One 3 2008 e1697
-
(2008)
PLoS One
, vol.3
, pp. 1697
-
-
Wallace, R.G.1
Fitch, W.M.2
-
37
-
-
84873403934
-
Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm
-
P. Lemey, M. Suchard, and A. Rambaut Reconstructing the initial global spread of a human influenza pandemic: a Bayesian spatial-temporal model for the global spread of H1N1pdm PLoS Curr 1 2009 RRN1031
-
(2009)
PLoS Curr
, vol.1
, pp. 1031
-
-
Lemey, P.1
Suchard, M.2
Rambaut, A.3
-
38
-
-
67349177735
-
The origin and global emergence of adamantane resistant A/H3N2 influenza viruses
-
M.I. Nelson, L. Simonsen, C. Viboud, M.A. Miller, and E.C. Holmes The origin and global emergence of adamantane resistant A/H3N2 influenza viruses Virology 388 2009 270 278
-
(2009)
Virology
, vol.388
, pp. 270-278
-
-
Nelson, M.I.1
Simonsen, L.2
Viboud, C.3
Miller, M.A.4
Holmes, E.C.5
-
39
-
-
50849132217
-
Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States
-
M.I. Nelson, L. Edelman, D.J. Spiro, A.R. Boyne, J. Bera, R. Halpin, N. Sengamalay, E. Ghedin, M.A. Miller, and L. Simonsen Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States PLoS Pathog 4 2008 e1000133
-
(2008)
PLoS Pathog
, vol.4
, pp. 1000133
-
-
Nelson, M.I.1
Edelman, L.2
Spiro, D.J.3
Boyne, A.R.4
Bera, J.5
Halpin, R.6
Sengamalay, N.7
Ghedin, E.8
Miller, M.A.9
Simonsen, L.10
-
40
-
-
77954076631
-
Global migration dynamics underlie evolution and persistence of human influenza A (H3N2)
-
T. Bedford, S. Cobey, P. Beerli, and M. Pascual Global migration dynamics underlie evolution and persistence of human influenza A (H3N2) PLoS Pathog 6 2010 e1000918
-
(2010)
PLoS Pathog
, vol.6
, pp. 1000918
-
-
Bedford, T.1
Cobey, S.2
Beerli, P.3
Pascual, M.4
-
41
-
-
42349094829
-
The global circulation of seasonal influenza A (H3N2) viruses
-
C.A. Russell, T.C. Jones, I.G. Barr, N.J. Cox, R.J. Garten, V. Gregory, I.D. Gust, A.W. Hampson, A.J. Hay, and A.C. Hurt The global circulation of seasonal influenza A (H3N2) viruses Science 320 2008 340 346
-
(2008)
Science
, vol.320
, pp. 340-346
-
-
Russell, C.A.1
Jones, T.C.2
Barr, I.G.3
Cox, N.J.4
Garten, R.J.5
Gregory, V.6
Gust, I.D.7
Hampson, A.W.8
Hay, A.J.9
Hurt, A.C.10
-
42
-
-
33646006370
-
Synchrony, waves, and spatial hierarchies in the spread of influenza
-
C. Viboud, O.N. Bjornstad, D.L. Smith, L. Simonsen, M.A. Miller, and B.T. Grenfell Synchrony, waves, and spatial hierarchies in the spread of influenza Science 312 2006 447 451
-
(2006)
Science
, vol.312
, pp. 447-451
-
-
Viboud, C.1
Bjornstad, O.N.2
Smith, D.L.3
Simonsen, L.4
Miller, M.A.5
Grenfell, B.T.6
-
43
-
-
33750882921
-
Empirical evidence for the effect of airline travel on inter-regional influenza spread in the United States
-
J.S. Brownstein, C.J. Wolfe, and K.D. Mandl Empirical evidence for the effect of airline travel on inter-regional influenza spread in the United States PLoS Med 3 2006 e401
-
(2006)
PLoS Med
, vol.3
, pp. 401
-
-
Brownstein, J.S.1
Wolfe, C.J.2
Mandl, K.D.3
-
44
-
-
33845330212
-
Air travel and the spread of influenza: Important caveats
-
author reply e502
-
C. Viboud, M.A. Miller, B.T. Grenfell, O.N. Bjornstad, and L. Simonsen Air travel and the spread of influenza: important caveats PLoS Med 3 2006 e503 author reply e502
-
(2006)
PLoS Med
, vol.3
, pp. 503
-
-
Viboud, C.1
Miller, M.A.2
Grenfell, B.T.3
Bjornstad, O.N.4
Simonsen, L.5
-
45
-
-
79951947917
-
The role of swine as "mixing vessel" for interspecies transmission of the influenza A subtype H1N1: A simultaneous Bayesian inference of phylogeny and ancestral hosts
-
J. Hass, S. Matuszewski, D. Cieslik, and M. Haase The role of swine as "mixing vessel" for interspecies transmission of the influenza A subtype H1N1: a simultaneous Bayesian inference of phylogeny and ancestral hosts Infect Genet Evol 11 2010 437 441
-
(2010)
Infect Genet Evol
, vol.11
, pp. 437-441
-
-
Hass, J.1
Matuszewski, S.2
Cieslik, D.3
Haase, M.4
-
46
-
-
77955288981
-
Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats
-
D.G. Streicker, A.S. Turmelle, M.J. Vonhof, I.V. Kuzmin, G.F. McCracken, and C.E. Rupprecht Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats Science 329 2010 676 679
-
(2010)
Science
, vol.329
, pp. 676-679
-
-
Streicker, D.G.1
Turmelle, A.S.2
Vonhof, M.J.3
Kuzmin, I.V.4
McCracken, G.F.5
Rupprecht, C.E.6
-
47
-
-
0028819120
-
The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh
-
E.C. Holmes, L.Q. Zhang, P. Robertson, A. Cleland, E. Harvey, P. Simmonds, and A.J. Leigh Brown The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh J Infect Dis 171 1995 45 53
-
(1995)
J Infect Dis
, vol.171
, pp. 45-53
-
-
Holmes, E.C.1
Zhang, L.Q.2
Robertson, P.3
Cleland, A.4
Harvey, E.5
Simmonds, P.6
Leigh Brown, A.J.7
-
48
-
-
77957908876
-
Phylogeography of recently emerged DENV-2 in southern Viet Nam
-
M.A. Rabaa, V.T. Ty Hang, B. Wills, J. Farrar, C.P. Simmons, and E.C. Holmes Phylogeography of recently emerged DENV-2 in southern Viet Nam PLoS Negl Trop Dis 4 2010 e766
-
(2010)
PLoS Negl Trop Dis
, vol.4
, pp. 766
-
-
Rabaa, M.A.1
Ty Hang, V.T.2
Wills, B.3
Farrar, J.4
Simmons, C.P.5
Holmes, E.C.6
-
49
-
-
80051469138
-
Multiple hybridizations between ancient brown and polar bears and an Irish origin for the modern polar bear matriline
-
C.J.S.M. Edwards, P. Lemey, J.J. Welch, I. Barnes, T.L. Fulton, R. Barnett, T.C. O'Connell, P. Coxon, N. Monaghan, C.E. Valdiosera, E.D. Lorenzen, and E. WIllerslev Multiple hybridizations between ancient brown and polar bears and an Irish origin for the modern polar bear matriline Curr Biol 21 2011 1251 1258
-
(2011)
Curr Biol
, vol.21
, pp. 1251-1258
-
-
Edwards, C.J.S.M.1
Lemey, P.2
Welch, J.J.3
Barnes, I.4
Fulton, T.L.5
Barnett, R.6
O'Connell, T.C.7
Coxon, P.8
Monaghan, N.9
Valdiosera, C.E.10
Lorenzen, E.D.11
Willerslev, E.12
-
50
-
-
0034983646
-
Bayesian selection of continuous-time Markov chain evolutionary models
-
M.A. Suchard, R.E. Weiss, and J.S. Sinsheimer Bayesian selection of continuous-time Markov chain evolutionary models Mol Biol Evol 18 2001 1001 1013
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1001-1013
-
-
Suchard, M.A.1
Weiss, R.E.2
Sinsheimer, J.S.3
-
52
-
-
36749089409
-
Counting labeled transitions in continuous-time Markov models of evolution
-
V.N. Minin, and M.A. Suchard Counting labeled transitions in continuous-time Markov models of evolution J Math Biol 56 2008 391 412
-
(2008)
J Math Biol
, vol.56
, pp. 391-412
-
-
Minin, V.N.1
Suchard, M.A.2
-
53
-
-
62349114870
-
Learning to count: Robust estimates for labeled distances between molecular sequences
-
J.D. O'Brien, V.N. Minin, and M.A. Suchard Learning to count: robust estimates for labeled distances between molecular sequences Mol Biol Evol 26 2009 801 814
-
(2009)
Mol Biol Evol
, vol.26
, pp. 801-814
-
-
O'Brien, J.D.1
Minin, V.N.2
Suchard, M.A.3
-
55
-
-
80053959139
-
SPREAD: Spatial phylogenetic reconstruction of evolutionary dynamics
-
F. R.A. Bielejec, M.A. Suchard, and P. Lemey SPREAD: Spatial phylogenetic reconstruction of evolutionary dynamics Bioinformatics 27 2011 2910 2912
-
(2011)
Bioinformatics
, vol.27
, pp. 2910-2912
-
-
Bielejec, F.R.A.1
Suchard, M.A.2
Lemey, P.3
-
56
-
-
0033613376
-
Inferring the historical patterns of biological evolution
-
M. Pagel Inferring the historical patterns of biological evolution Nature 401 1999 877 884
-
(1999)
Nature
, vol.401
, pp. 877-884
-
-
Pagel, M.1
-
57
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
F. Ronquist, and J.P. Huelsenbeck MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 2003 1572 1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
|