Cloning of human NPCEDRG core promoter and preliminary identification of its CCAAT/NFY binding site

Progress in Biochemistry and Biophysics

Volumn 38, Issue 8, 2011, Pages 713-723

  Hou, De Fu ^a,b,c   Yong Jun, Guan ^b   Rui, Guan ^a,b   Yong Mei, Ouyang ^b   Yu, Yan Hui ^b   Chen, Zhu Chu ^a,b  

^a CENTRAL SOUTH UNIVERSITY   (China)

^b The First People s Hospital of Changde City)   (China)

^c HUNAN NORMAL UNIVERSITY   (China)

Author keywords

CCAAT NFYbinding site; Core promoter; NPCEDRGgene; Transcription regulation

Indexed keywords

VERTEBRATA;

EID: 81355160918     PISSN: 10003282     EISSN: None     Source Type: Journal    
DOI: 10.3724/SP.J.1206.2010.00673     Document Type: Article

References (28)

1. Parkin D M, Whelan S L, Ferlay J, et al. Cancer incidence In Five Continents. Vol. 7. Lyon: IARC, 1997: 334-337
2. Zeng Z Y, Zhou Y, Zhang W, et al. Family-based association analysis validates chromosome 3p21 as a putative nasopharyngeal carcinoma susceptibility locus. Genet Med, 2006, 8(3): 156-160
3. Chien Y C, Chen J Y, Liu MY, et al. Serologic markers of Epstein- Barr virus infection and nasopharyngeal carcinoma in Taiwanese men. NEngl J Med, 2001, 345(26): 1877-1882
4. Ward MH, Pan WH, Cheng Y J, et al. Dietary exposure to nitrite and nitrosamines and risk of nasopharyngeal carcinoma in Taiwan. Int J Cancer, 2000, 86(5): 603-609 (Pubitemid 30249868)
5. Xiong W, Zeng Z Y, Xia J H, et al. A susceptibility locus at cChromosome 3p21 linked to familial nasopharyngeal carcinoma. Cancer Res, 2004, 64(6): 1972-1974 (Pubitemid 38339442)
6. Chan A S, To K F, Lo K W, et al. High frequency of chromosome 3p deletion in histologically normal nasopharyngeal epithelia from southern Chinese. Cancer Res, 2000, 60(19): 5365-5370
7. Chow L S, Lam C W, Chan S Y, et al. Identification of RASSF1A modulated genes in nasopharyngeal carcinoma. Oncogene, 2006, 25(2): 310-316 (Pubitemid 43083693)
8. Yau W L, Lung H L, Zabarovsky E R, et al. Functional studies of the chromosome 3p21.3 candidate tumor suppressor gene BLU/ZMYND10 in nasopharyngeal carcinoma. Int J Cancer, 2006, 119(12): 2821-2826 (Pubitemid 44846233)
9. He XS, Chen Z C, Tian F, et al. Chin J Cancer, 2003, 22(1): 1-5
10. Guan Y J, He X S, Hou D F, et al. Life Sci Res, 2006, 10(2):173-177
11. Yang S, Hu H, Deng M, et al. Prog BiochemBiophys, 2010, 37(2): 167-174
12. Bajic V B, Seah S H, Chong A, et al. Dragon Promoter Finder: recognition of vertebrate RNA polymerase ?promoters. Bioinformatics, 2002, 18(1): 198-199 (Pubitemid 34145051)
13. Werner T. Computer-assisted analysis of transcription control regions. Matinspector and other programs. Meth Mol Biol, 2006, 132: 337-349
14. Larsen F, Gundersen G, Lopez R, et al. CpG islands as gene markers in the human genome. Genomics, 1992, 13(4): 1095-1107
15. Wakaguri H, Yamashita R, Suzuki Y, et al. DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res, 2008, 36(Database issue): D97-101
16. Ovcharenko I, Nobrega MA, Loots G G, et al. ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes. Nucleic Acids Research, 2004, 32(Web server issue): W280-W286 (Pubitemid 38997344)
17. Martinez E, Chiang C M, Ge H, et al. TATA-binding proteinassociated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class?promoter. EMBO J, 1994, 13(13): 3115-3126 (Pubitemid 24213463)
18. Juven-Gershon T, Hsu J Y, Theisen J W, et al. The RNA polymerase ?core promoter-the gateway to transcription. Curr Opin Cell Biol, 2008, 20(3): 253-259
19. Sandelin A, Carninci P, Lenhard B, et al. Mammalian RNA polymerase?core promoters: insights from genome-wide studies. Nat Rev Genet, 2007, 8(6): 424-436 (Pubitemid 46789243)
20. Bajic V B, Tan S L, Christoffels A, et al. Mice and men: their promoter properties. PLoS Genet, 2006, 2(4): e54
21. FitzGerald P C, Shlyakhtenko A, Mir A A, et al. Clustering of DNA sequences in human promoters. Genome Res, 2004, 14(8): 1562-1574 (Pubitemid 39193407)
22. Mantovani R. The molecular biology of the CCAAT-binding factor NF-Y. Gene, 1999, 239(1): 15-27 (Pubitemid 29462565)
23. de Silvio A, Imbriano C, Mantovani R. Dissection of the NF-Y transcriptional activation potential. Nucleic Acids Res, 1999, 27 (13): 2578-2584 (Pubitemid 29306553)
24. Ceribelli M, Benatti P, Imbriano C, et al. NF-YC complexity is generated by dual promoters and alternative splicing. J Biol Chem, 2009, 284(49): 34189-34200
25. Bellorini M, Lee D K, Dantonel J C, et al. CCAAT binding NF-YTBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues. Nucleic Acids Res, 1997, 25(11): 2174-2181 (Pubitemid 27303453)
26. Kabe Y, Yamada J, Uga H, et al. NF-Y is essential for the recruitment of RNA polymerase?and inducible transcription of several CCAAT box-containing genes. Mol Cell Biol, 2005, 25(1): 512-522 (Pubitemid 40039839)
27. Tapias A, Monasterio P, Ciudad C J, et al. Characterization of the 5'-flanking region of the human transcription factor Sp3 gene. BiochimBiophys Acta, 2005, 1730(2): 126-136 (Pubitemid 41133470)
28. Morachis J M, Murawsky C M, Emerson B M. Regulation of the p53 transcriptional response by structurally diverse core promoters. Genes Dev, 2010, 24(2): 135-147