-
1
-
-
0344631083
-
Growth dynamics of the world wide web
-
doi:10.1038/43604
-
Adamic, L. A., & Huberman, B. A. (1999). Growth dynamics of the World Wide Web. Nature, 401, 131. doi:10.1038/43604
-
(1999)
Nature
, vol.401
, pp. 131
-
-
Adamic, L.A.1
Huberman, B.A.2
-
2
-
-
0036013593
-
Statistical mechanics of complex networks
-
doi:10.1103/RevModPhys.74.47
-
Albert, R., & Barabasi, A.-L. (2002). Statistical mechanics of complex networks. Reviews of Modern Physics, 74, 47-97. doi:10.1103/RevModPhys.74.47
-
(2002)
Reviews of Modern Physics
, vol.74
, pp. 47-97
-
-
Albert, R.1
Barabasi, A.-L.2
-
3
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
doi:10.1038/nrg2102
-
Alon, U. (2007). Network motifs: Theory and experimental approaches. Nature Genetics, 8, 450-461. doi:10.1038/nrg2102
-
(2007)
Nature Genetics
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
4
-
-
8144219542
-
Emergence of complex dynamics in a simple model of signaling networks
-
doi:10.1073/pnas.0404843101
-
Amaral, L. A. N., Diaz-Guilera, A., Moreira, A. A., Goldberger, A. L., & Lipsitz, L. A. (2004). Emergence of complex dynamics in a simple model of signaling networks. Proceedings of the National Academy of Sciences of the United States of America, 101, 15551. doi:10.1073/pnas.0404843101
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 15551
-
-
Amaral, L.A.N.1
Diaz-Guilera, A.2
Moreira, A.A.3
Goldberger, A.L.4
Lipsitz, L.A.5
-
5
-
-
33645156787
-
Synchronization reveals topological scales in complex networks
-
doi:10.1103/PhysRevLett.96.114102
-
Arenas, A., Diaz-Guilera, A., & Perez-Vicente, C. J. (2006). Synchronization reveals topological scales in complex networks. Physical Review Letters, 96, 114102. doi:10.1103/PhysRevLett.96.114102
-
(2006)
Physical Review Letters
, vol.96
, pp. 114102
-
-
Arenas, A.1
Diaz-Guilera, A.2
Perez-Vicente, C.J.3
-
6
-
-
0030986188
-
The hardwiring of development: Organization and function of genomic regulatory systems
-
Arnone, M. I., & Davidson, E. H. (1997). The hardwiring of development: Organization and function of genomic regulatory systems. Development, 124, 1851-1864.
-
(1997)
Development
, vol.124
, pp. 1851-1864
-
-
Arnone, M.I.1
Davidson, E.H.2
-
7
-
-
27244446299
-
Graph operations and synchronization of complex networks
-
doi:10.1103/Phys-RevE.72.016217
-
Atay, F. M., & Biyikoglu, T. (2005). Graph operations and synchronization of complex networks. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 72, 016217. doi:10.1103/Phys-RevE.72.016217
-
(2005)
Physical review E: Statistical Nonlinear, and Soft Matter Physics
, vol.72
, pp. 016217
-
-
Atay, F.M.1
Biyikoglu, T.2
-
8
-
-
20344379457
-
Topological units of environmental signal processing in the transcriptional regulatory network of escherichia coli
-
doi:10.1073/pnas.0500365102
-
Balázsi, G., Barabási, A. L., & Oltvai, Z. N. (2005). Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America, 102, 7841. doi:10.1073/pnas.0500365102
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 7841
-
-
Balázsi, G.1
Barabási, A.L.2
Oltvai, Z.N.3
-
9
-
-
34249683912
-
Spectral plots and the representation and interpretation of biological data
-
doi:10.1007/s12064-007-0005-9
-
Banerjee, A., & Jost, J. (2007). Spectral plots and the representation and interpretation of biological data. Theory in Biosciences, 126, 15-21. doi:10.1007/s12064-007-0005-9
-
(2007)
Theory in Biosciences
, vol.126
, pp. 15-21
-
-
Banerjee, A.1
Jost, J.2
-
10
-
-
0038483826
-
Emergence of scaling in random networks
-
doi:10.1126/science.286.5439.509
-
Barabasi, A. L., & Albert, R. (1999). Emergence of scaling in random networks. Science, 286, 509-512. doi:10.1126/science.286.5439.509
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
11
-
-
16844376909
-
Reverse engineering of regulatory networks in human b cells
-
doi:10.1038/ng1532
-
Basso, K., Margolin, A., Stolovitzky, G., Klein, U., Dalla-Favera, R., & Califano, A. (2005). Reverse engineering of regulatory networks in human B cells. Nature Genetics, 37, 382-390. doi:10.1038/ng1532
-
(2005)
Nature Genetics
, vol.37
, pp. 382-390
-
-
Basso, K.1
Margolin, A.2
Stolovitzky, G.3
Klein, U.4
Dalla-Favera, R.5
Califano, A.6
-
12
-
-
27144450537
-
Less is more in modeling large genetic networks
-
doi:10.1126/ science.1119959
-
Bornholdt, S. (2005). Less is more in modeling large genetic networks. Science, 310, 449. doi:10.1126/ science.1119959
-
(2005)
Science
, vol.310
, pp. 449
-
-
Bornholdt, S.1
-
14
-
-
0036843965
-
Gene networks: How to put the function in genomics
-
doi:10.1016/S0167-7799(02)02053-X
-
Brazhnik, P., de la Fuente, A., & Mendes, P. (2002). Gene networks: How to put the function in genomics. Trends in Biotechnology, 20, 467-472. doi:10.1016/S0167-7799(02)02053-X
-
(2002)
Trends in Biotechnology
, vol.20
, pp. 467-472
-
-
Brazhnik, P.1
de la Fuente, A.2
Mendes, P.3
-
15
-
-
33645012079
-
Connectivity and expression in protein networks: Proteins in a complex are uniformly expressed
-
doi:10.1103/PhysRevE.73.031909
-
Carmi, S., Levanon, E. Y., Havlin, S., & Eisenberg, E. (2006). Connectivity and expression in protein networks: Proteins in a complex are uniformly expressed. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 73, 031909. doi:10.1103/PhysRevE.73.031909
-
(2006)
Physical Review E: Statistical, Nonlinear, and Soft Matter Physics
, vol.73
, pp. 031909
-
-
Carmi, S.1
Levanon, E.Y.2
Havlin, S.3
Eisenberg, E.4
-
16
-
-
2342648924
-
Integrating highthroughput and computational data elucidates bacterial networks
-
doi:10.1038/ nature02456
-
Covert, M. W., Knight, E. M., Reed, J. L., Herrgard, M. J., & Palsson, B. O. (2004). Integrating highthroughput and computational data elucidates bacterial networks. Nature, 429, 92-96. doi:10.1038/ nature02456
-
(2004)
Nature
, vol.429
, pp. 92-96
-
-
Covert, M.W.1
Knight, E.M.2
Reed, J.L.3
Herrgard, M.J.4
Palsson, B.O.5
-
18
-
-
45849093636
-
Boolean network model predicts cell cycle sequence of fission yeast
-
in press
-
Davidich, M., & Bornholdt, S. (2007). (in press). Boolean network model predicts cell cycle sequence of fission yeast. PLoS ONE.
-
(2007)
PLoS ONE
-
-
Davidich, M.1
Bornholdt, S.2
-
19
-
-
0004018750
-
-
Eds., Philadelphia, PA: Harper & Row
-
Davis, D. D., Dulbecco, R., Eisen, H. N., & Ginsberg, H. S. (Eds.). (1980). Microbiology. Philadelphia, PA: Harper & Row.
-
(1980)
Microbiology
-
-
Davis, D.D.1
Dulbecco, R.2
Eisen, H.N.3
Ginsberg, H.S.4
-
20
-
-
2942552376
-
Aggregation of topological motifs in the escherichia coli transcriptional regulatory network
-
doi:10.1186/1471-2105-5-10
-
Dobrin, R., Beg, Q. K., Barabási, A.-L., & Oltvai, Z. N. (2004). Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network. BMC Bioinformatics, 5, 10. doi:10.1186/1471-2105-5-10
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 10
-
-
Dobrin, R.1
Beg, Q.K.2
Barabási, A.-L.3
Oltvai, Z.N.4
-
22
-
-
22444435897
-
Process or perish: Quality control in mrna biogenesis
-
doi:10.1038/nsmb945
-
Fasken, M. B., & Corbett, A. H. (2005). Process or perish: Quality control in mRNA biogenesis. Nature Structural & Molecular Biology, 12, 482-488. doi:10.1038/nsmb945
-
(2005)
Nature Structural & Molecular Biology
, vol.12
, pp. 482-488
-
-
Fasken, M.B.1
Corbett, A.H.2
-
23
-
-
0038048325
-
Inferring genetic networks and identifying compound mode of action via expression profiling
-
doi:10.1126/ science.1081900
-
Gardner, T. S., di Bernardo, D., Lorenz, D., & Collins, J. J. (2003). Inferring genetic networks and identifying compound mode of action via expression profiling. Science, 301(5629), 102-105. doi:10.1126/ science.1081900
-
(2003)
Science
, vol.301
, Issue.5629
, pp. 102-105
-
-
Gardner, T.S.1
di Bernardo, D.2
Lorenz, D.3
Collins, J.J.4
-
24
-
-
0037246060
-
Asap, a systematic annotation package for community analysis of genomes
-
doi:10.1093/nar/gkg125
-
Glasner, J. D., Liss, P., Plunkett, G. III, Darling, A., Prasad, T., & Rusch, M. (2003). ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Research, 31(1), 147-151. doi:10.1093/nar/gkg125
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 147-151
-
-
Glasner, J.D.1
Liss, P.2
Plunkett, G.I.3
Darling, A.4
Prasad, T.5
Rusch, M.6
-
25
-
-
0242495231
-
Investigation of the forest-fire model on a small-world network
-
doi:10.1103/Phys-RevE.68.036109
-
Graham, I., & Matthai, C. C. (2003). Investigation of the forest-fire model on a small-world network. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 68, 036109. doi:10.1103/Phys-RevE.68.036109
-
(2003)
Physical Review E: Statistical, Nonlinear, and Soft Matter Physics
, vol.68
, pp. 036109
-
-
Graham, I.1
Matthai, C.C.2
-
26
-
-
34547917218
-
The correlation between architecture and mrna abundance in the genetic regulatory network of escherichia coli
-
doi:10.1186/1752-0509-1-30
-
Grondin, Y., Raine, D. J., & Norris, V. (2007). The correlation between architecture and mRNA abundance in the genetic regulatory network of escherichia coli. BMC Systems Biology, 1, 30. doi:10.1186/1752-0509-1-30
-
(2007)
BMC Systems Biology
, vol.1
, pp. 30
-
-
Grondin, Y.1
Raine, D.J.2
Norris, V.3
-
27
-
-
0036578654
-
Topological and causal structure of the yeast transcriptional regulatory network
-
doi:10.1038/ng873
-
Guelzim, N., Bottani, S., Bourgine, P., & Kepes, F. (2002). Topological and causal structure of the yeast transcriptional regulatory network. Nature Genetics, 31(1), 60-63. doi:10.1038/ng873
-
(2002)
Nature Genetics
, vol.31
, Issue.1
, pp. 60-63
-
-
Guelzim, N.1
Bottani, S.2
Bourgine, P.3
Kepes, F.4
-
28
-
-
0242407438
-
Regulatory network of escherichia coli: Consistency between literature knowledge and microarray profiles
-
doi:10.1101/gr.1387003
-
Gutierrez-Rios, R. M., Rosenblueth, D. A., Loza, J. A., Huerta, A. M., Glasner, J. D., Blattner, F. R., & Collado-Vides, J. (2003). Regulatory network of Escherichia coli: Consistency between literature knowledge and microarray profiles. Genome Research, 13(11), 2435-2443. doi:10.1101/gr.1387003
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2435-2443
-
-
Gutierrez-Rios, R.M.1
Rosenblueth, D.A.2
Loza, J.A.3
Huerta, A.M.4
Glasner, J.D.5
Blattner, F.R.6
Collado-Vides, J.7
-
29
-
-
33846002036
-
Transcriptional regulation by competing transcription factor modules
-
doi:10.1371/journal.pcbi.0020164
-
Hermsen, R., Tans, S., & ten Wolde, P. R. (2006). Transcriptional regulation by competing transcription factor modules. PLoS Computational Biology, 2, e164. doi:10.1371/journal.pcbi.0020164
-
(2006)
PLoS Computational Biology
, vol.e164
, pp. 2
-
-
Hermsen, R.1
Tans, S.2
ten Wolde, P.R.3
-
30
-
-
0242574985
-
Reconciling gene expression data with known genome-scale regulatory network structures
-
doi:10.1101/ gr.1330003
-
Herrgard, M. J., Covert, M. W., & Palsson, B. O. (2003). Reconciling gene expression data with known genome-scale regulatory network structures. Genome Research, 13(11), 2423-2434. doi:10.1101/ gr.1330003
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2423-2434
-
-
Herrgard, M.J.1
Covert, M.W.2
Palsson, B.O.3
-
31
-
-
0032478716
-
Strong regularities in world wide web surfing
-
doi:10.1126/science.280.5360.95
-
Huberman, B. A., Pirolli, P. L. T., Pitkow, J. E., & Luose, R. M. (1998). Strong regularities in World Wide Web surfing. Science, 280, 95-97. doi:10.1126/science.280.5360.95
-
(1998)
Science
, vol.280
, pp. 95-97
-
-
Huberman, B.A.1
Pirolli, P.L.T.2
Pitkow, J.E.3
Luose, R.M.4
-
32
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
doi:10.1126/science.292.5518.929
-
Ideker, T., Thorsson, V., Ranish, J., Christmas, R., Buhler, J., & Eng, J. (2001). Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science, 292(5518), 929. doi:10.1126/science.292.5518.929
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 929
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.3
Christmas, R.4
Buhler, J.5
Eng, J.6
-
33
-
-
0036699526
-
Revealing modular organization in the yeast transcriptional network
-
Ihmels, J., Friedlander, G., Bergmann, S., Sarig, O., Ziv, Y., & Barkai, N. (2002). Revealing modular organization in the yeast transcriptional network. Nature Genetics, 31, 370-377.
-
(2002)
Nature Genetics
, vol.31
, pp. 370-377
-
-
Ihmels, J.1
Friedlander, G.2
Bergmann, S.3
Sarig, O.4
Ziv, Y.5
Barkai, N.6
-
34
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob, F., & Monod, J. (1961). Genetic regulatory mechanisms in the synthesis of proteins. Journal of Molecular Biology, 3, 318-356.
-
(1961)
Journal of Molecular Biology
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
35
-
-
0037372003
-
Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
-
SUPPL. doi:10.1038/ng1089
-
Jaenisch, R., & Bird, A. (2003). Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals. Nature Genetics, 33(Suppl), 245-254. doi:10.1038/ng1089
-
(2003)
Nature Genetics
, vol.33
, pp. 245-254
-
-
Jaenisch, R.1
Bird, A.2
-
36
-
-
0014489272
-
Metabolic stability and epigenesis in randomly constructed genetic nets
-
doi:10.1016/0022-5193(69)90015-0
-
Kauffman, S. (1969). Metabolic stability and epigenesis in randomly constructed genetic nets. Journal of Theoretical Biology, 22, 437. doi:10.1016/0022-5193(69)90015-0
-
(1969)
Journal of Theoretical Biology
, vol.22
, pp. 437
-
-
Kauffman, S.1
-
37
-
-
0037370460
-
Life after transcription--revisiting the fate of messenger rna
-
doi:10.1016/S0168-9525(02)00047-1
-
Khodursky, A. B., & Bernstein, J. A. (2003). Life after transcription--revisiting the fate of messenger RNA. Trends in Genetics, 19, 113-115. doi:10.1016/S0168-9525(02)00047-1
-
(2003)
Trends in Genetics
, vol.19
, pp. 113-115
-
-
Khodursky, A.B.1
Bernstein, J.A.2
-
38
-
-
4243148480
-
Authoritative sources in a hyperlinked environment
-
doi:10.1145/324133.324140
-
Kleinberg, J. M. (1999). Authoritative sources in a hyperlinked environment. Journal of the ACM, 46, 604-632. doi:10.1145/324133.324140
-
(1999)
Journal of the ACM
, vol.46
, pp. 604-632
-
-
Kleinberg, J.M.1
-
40
-
-
34548770133
-
Comparative study of the transcriptional regulatory networks of e. Coli and yeast: Structural characteristics leading to marginal dynamic stability
-
doi:10.1016/j.jtbi.2007.07.001
-
Lee, D.-S., & Rieger, H. (2007). Comparative study of the transcriptional regulatory networks of E. coli and yeast: Structural characteristics leading to marginal dynamic stability. Journal of Theoretical Biology, 248(4), 618-626. doi:10.1016/j.jtbi.2007.07.001
-
(2007)
Journal of Theoretical Biology
, vol.248
, Issue.4
, pp. 618-626
-
-
Lee, D.-S.1
Rieger, H.2
-
41
-
-
0037174671
-
Transcriptional regulatory networks in saccharomyces cerevisiae
-
doi:10.1126/science.1075090
-
Lee, T. I., Rinaldi, N. J., Robert, F., Odom, D. T., Bar-Joseph, Z., & Gerber, G. K. (2002). Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298, 799. doi:10.1126/science.1075090
-
(2002)
Science
, vol.298
, pp. 799
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
-
42
-
-
0037819447
-
Transcription regulation and animal diversity
-
doi:10.1038/nature01763
-
Levine, M., & Tjian, R. (2003). Transcription regulation and animal diversity. Nature, 424, 147-151. doi:10.1038/nature01763
-
(2003)
Nature
, vol.424
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
43
-
-
85136707356
-
Structure of genetic regulatory networks: Evidence for scale free networks
-
In M. M. Nowak (Ed.), Singapore: World Scientific
-
Liebovitch, L. S., Jirsa, V. K., & Shehadeh, L. A. (2006). Structure of genetic regulatory networks: Evidence for scale free networks. In M. M. Nowak (Ed.), Complexus mundi: Emergent patterns in nature (pp. 1-8). Singapore: World Scientific.
-
(2006)
Complexus Mundi: Emergent Patterns in Nature
, pp. 1-8
-
-
Liebovitch, L.S.1
Jirsa, V.K.2
Shehadeh, L.A.3
-
44
-
-
77952741868
-
Developing combinatorial multicomponent therapies (cmct) of drugs that are more specific and have fewer side effects than traditional one drug therapies
-
doi:. doi:10.1186/1753-4631-1-11
-
Liebovitch, L. S., Tsinoremas, N., & Pandya, A. (2007). Developing combinatorial multicomponent therapies (CMCT) of drugs that are more specific and have fewer side effects than traditional one drug therapies. Nonlinear Biomedical Physics, 1, 11. doi:. doi:10.1186/1753-4631-1-11
-
(2007)
Nonlinear Biomedical Physics
, vol.1
, pp. 11
-
-
Liebovitch, L.S.1
Tsinoremas, N.2
Pandya, A.3
-
45
-
-
4644326931
-
Genomic analysis of regulatory network dynamics reveals large topological changes
-
doi:10.1038/nature02782
-
Luscombe, N. M., Babu, M. M., Yu, H., Snyder, M., Teichmann, S. A., & Gerstein, M. (2004). Genomic analysis of regulatory network dynamics reveals large topological changes. Nature, 431, 308-312. doi:10.1038/nature02782
-
(2004)
Nature
, vol.431
, pp. 308-312
-
-
Luscombe, N.M.1
Babu, M.M.2
Yu, H.3
Snyder, M.4
Teichmann, S.A.5
Gerstein, M.6
-
47
-
-
13244264814
-
Hierarchical structure and modules in the escherichia coli transcriptional regulatory network revealed by a new top-down approach
-
doi:10.1186/1471-2105-5-199
-
Ma, H.-W., Buer, J., & Zeng, A.-P. (2004). Hierarchical structure and modules in the escherichia coli transcriptional regulatory network revealed by a new top-down approach. BMC Bioinformatics, 5, 199. doi:10.1186/1471-2105-5-199
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 199
-
-
Ma, H.-W.1
Buer, J.2
Zeng, A.-P.3
-
48
-
-
40649089205
-
Dissecting the logical types of network control in gene expression profiles
-
Marr, C., Geertz, M., Hütt, M.-T., & Mushkhelishvili, (2008). Dissecting the logical types of network control in gene expression profiles. BMC Sys. Biol., 2, 18.
-
(2008)
BMC Sys. Biol
, vol.2
, pp. 18
-
-
Marr, C.1
Geertz, M.2
Hütt, M.-T.3
Mushkhelishvili4
-
49
-
-
19944404419
-
Topology regulates pattern formation capacity of binary cellular automata on graphs
-
doi:10.1016/j.physa.2005.02.019
-
Marr, C., & Hütt, M.-T. (2005). Topology regulates pattern formation capacity of binary cellular automata on graphs. Physica A, 354, 641-662. doi:10.1016/j.physa.2005.02.019
-
(2005)
Physica A
, vol.354
, pp. 641-662
-
-
Marr, C.1
Hütt, M.-T.2
-
50
-
-
29644436525
-
Similar impact of topological and dynamic noise on complex patterns
-
doi:10.1016/j.physleta.2005.08.096
-
Marr, C., & Hütt, M.-T. (2006). Similar impact of topological and dynamic noise on complex patterns. Physics Letters. [Part A], 349, 302-305. doi:10.1016/j.physleta.2005.08.096
-
(2006)
Physics Letters. [Part A]
, vol.349
, pp. 302-305
-
-
Marr, C.1
Hütt, M.-T.2
-
51
-
-
23944483135
-
Post-transcriptional control of gene expression: A genomewide perspective
-
doi:10.1016/j.tibs.2005.07.005
-
Mata, J., Marguerat, S., & Bahler, J. (2005). Post-transcriptional control of gene expression: A genomewide perspective. Trends in Biochemical Sciences, 30, 506-514. doi:10.1016/j.tibs.2005.07.005
-
(2005)
Trends in Biochemical Sciences
, vol.30
, pp. 506-514
-
-
Mata, J.1
Marguerat, S.2
Bahler, J.3
-
53
-
-
1542287343
-
Superfamilies of evolved and designed networks
-
doi:10.1126/science.1089167
-
Milo, R., Itzkovitz, S., Kashtan, N., Levitt, R., Shen-Orr, S., & Ayzenshtat, I. (2004). Superfamilies of evolved and designed networks. Science, 303, 1538. doi:10.1126/science.1089167
-
(2004)
Science
, vol.303
, pp. 1538
-
-
Milo, R.1
Itzkovitz, S.2
Kashtan, N.3
Levitt, R.4
Shen-Orr, S.5
Ayzenshtat, I.6
-
54
-
-
4344628214
-
Efficient system-wide coordination in noisy environments
-
doi:10.1073/pnas.0400672101
-
Moreira, A. A., Mathur, A., Diermeier, D., & Amaral, L. A. N. (2004). Efficient system-wide coordination in noisy environments. Proceedings of the National Academy of Sciences of the United States of America, 101, 12085. doi:10.1073/pnas.0400672101
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 12085
-
-
Moreira, A.A.1
Mathur, A.2
Diermeier, D.3
Amaral, L.A.N.4
-
55
-
-
0000494582
-
Epidemic outbreaks in complex heterogeneous networks
-
Moreno, Y., Pastor-Satorras, R., & Vespignani, A. (2002). Epidemic outbreaks in complex heterogeneous networks. The European Physical Journal B, 26, 521.
-
(2002)
The European Physical Journal B
, vol.26
, pp. 521
-
-
Moreno, Y.1
Pastor-Satorras, R.2
Vespignani, A.3
-
57
-
-
33746238165
-
Topology regulates synchronization patterns in excitable dynamics on graphs
-
doi:10.1103/PhysRevE.74.016112
-
Müller-Linow, M., Marr, C., & Hütt, M.-T. (2006). Topology regulates synchronization patterns in excitable dynamics on graphs. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 74, 016112. doi:10.1103/PhysRevE.74.016112
-
(2006)
Physical Review E: Statistical, Nonlinear, and Soft Matter Physics
, vol.74
, pp. 016112
-
-
Müller-Linow, M.1
Marr, C.2
Hütt, M.-T.3
-
58
-
-
33745521141
-
Synchronization is optimal in nondiagonalizable networks
-
doi:10.1103/Phys-RevE.73.065106
-
Nishikawa, T., & Motter, A. E. (2006). Synchronization is optimal in nondiagonalizable networks. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 73, 065106. doi:10.1103/Phys-RevE.73.065106
-
(2006)
Physical Review E: Statistical, Nonlinear, and Soft Matter Physics
, vol.73
, pp. 065106
-
-
Nishikawa, T.1
Motter, A.E.2
-
59
-
-
0027432048
-
Negative autoregulation by the escherichia coli soxs protein: A dampening mechanism for the soxrs redox stress response
-
Nunoshiba, T., Hidalgo, E., Li, Z., & Demple, B. (1993). Negative autoregulation by the escherichia coli soxs protein: A dampening mechanism for the soxrs redox stress response. Journal of Bacteriology, 175(22), 7492-7494.
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.22
, pp. 7492-7494
-
-
Nunoshiba, T.1
Hidalgo, E.2
Li, Z.3
Demple, B.4
-
60
-
-
0742288008
-
The enzymes and control of eukaryotic mrna turnover
-
doi:10.1038/nsmb724
-
Parker, R., & Song, H. (2004). The enzymes and control of eukaryotic mRNA turnover. Nature Structural & Molecular Biology, 11, 121-127. doi:10.1038/nsmb724
-
(2004)
Nature Structural & Molecular Biology
, vol.11
, pp. 121-127
-
-
Parker, R.1
Song, H.2
-
61
-
-
0034912742
-
Histone acetyltransferases
-
doi:10.1146/annurev.biochem.70.1.81
-
Roth, S. Y., Denu, J. M., & Allis, C. D. (2001). Histone acetyltransferases. Annual Review of Biochemistry, 70, 81-120. doi:10.1146/annurev.biochem.70.1.81
-
(2001)
Annual Review of Biochemistry
, vol.70
, pp. 81-120
-
-
Roth, S.Y.1
Denu, J.M.2
Allis, C.D.3
-
62
-
-
3042558271
-
Self-sustained activity in a small-world network of excitable neurons
-
doi:10.1103/PhysRevLett.92.198101
-
Roxin, A., Riecke, H., & Solla, S. A. (2004). Self-sustained activity in a small-world network of excitable neurons. Physical Review Letters, 92, 198101. doi:10.1103/PhysRevLett.92.198101
-
(2004)
Physical Review Letters
, vol.92
, pp. 198101
-
-
Roxin, A.1
Riecke, H.2
Solla, S.A.3
-
63
-
-
33644873438
-
Regulondb (version 5.0): Escherichia coli k-12 transcriptional regulatory network, operon organization, and growth conditions
-
doi:10.1093/nar/gkj156
-
Salgado, H., Gama-Castro, S., Peralta-Gil, M., Diaz-Peredo, E., Sanchez-Solano, F., & Santos-Zavaleta, A. (2006). RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Research, 34, D394-D397. doi:10.1093/nar/gkj156
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Salgado, H.1
Gama-Castro, S.2
Peralta-Gil, M.3
Diaz-Peredo, E.4
Sanchez-Solano, F.5
Santos-Zavaleta, A.6
-
64
-
-
33645148293
-
The structure of genetic networks determined from mrna levels measured by cdna microarrays
-
doi:10.1016/j.phy-sa.2005.08.069
-
Shehadeh, L., Liebovitch, L. S., & Jirsa, V. K. (2006). The structure of genetic networks determined from mRNA levels measured by cDNA microarrays. Physica A, 364, 297-314. doi:10.1016/j.phy-sa.2005.08.069
-
(2006)
Physica A
, vol.364
, pp. 297-314
-
-
Shehadeh, L.1
Liebovitch, L.S.2
Jirsa, V.K.3
-
65
-
-
0036578795
-
Network motifs in the transcriptional regulation network of escherichia coli
-
doi:10.1038/ng881
-
Shen-Orr, S. S., Milo, R., Mangan, S., & Alon, U. (2002). Network motifs in the transcriptional regulation network of Escherichia coli. Nature Genetics, 31, 64-68. doi:10.1038/ng881
-
(2002)
Nature Genetics
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
66
-
-
34748871477
-
Regulation of gene expression by small non-coding rnas: A quantitative view
-
Shimoni, Y., Friedlander, G., Hetzroni, G., Niv, G., Altuvia, S., Biham, O., & Margalit, H. (2007). Regulation of gene expression by small non-coding RNAs: A quantitative view. Molecular Systems Biology, 3.
-
(2007)
Molecular Systems Biology
, pp. 3
-
-
Shimoni, Y.1
Friedlander, G.2
Hetzroni, G.3
Niv, G.4
Altuvia, S.5
Biham, O.6
Margalit, H.7
-
67
-
-
60749120198
-
Structural determinants of functional brain connectivity
-
In V. K. Jirsa & A. R. M. McIntosh (Eds.), Springer
-
Sporns, O., & Tononi, G. (2007). Structural determinants of functional brain connectivity. In V. K. Jirsa & A. R. M. McIntosh (Eds.), Handbook of brain connectivity. Springer.
-
(2007)
Handbook of Brain Connectivity
-
-
Sporns, O.1
Tononi, G.2
-
68
-
-
0035826155
-
Exploring complex networks
-
[london.] doi:10.1038/35065725
-
Strogatz, S. H. (2001). Exploring complex networks. [London.]. Nature, 410, 268-277. doi:10.1038/35065725
-
(2001)
Nature
, vol.410
, pp. 268-277
-
-
Strogatz, S.H.1
-
69
-
-
0029617947
-
Virus induction of human ifn beta gene expression requires the assembly of an enhanceosome
-
doi:10.1016/0092-8674(95)90136-1
-
Thanos, D., & Maniatis, T. (1995). Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome. Cell, 83, 1091-1100. doi:10.1016/0092-8674(95)90136-1
-
(1995)
Cell
, vol.83
, pp. 1091-1100
-
-
Thanos, D.1
Maniatis, T.2
-
70
-
-
0032077377
-
From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in escherichia coli
-
doi:10.1002/(SICI)1521-1878(199805)20:5<433::AID-BIES10>3.0.CO;2-2
-
Thieffry, D., Huerta, A. M., Pèrez-Rueda, E., & Collado-Vides, J. (1998). From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in escherichia coli. BioEssays, 20, 433-440. doi:10.1002/(SICI)1521-1878(199805)20:5<433::AID-BIES10>3.0.CO;2-2
-
(1998)
BioEssays
, vol.20
, pp. 433-440
-
-
Thieffry, D.1
Huerta, A.M.2
Pèrez-Rueda, E.3
Collado-Vides, J.4
-
71
-
-
13444288385
-
Dna supercoiling-a global transcriptional regulator for enterobacterial growth?
-
doi:10.1038/nrmicro1088
-
Travers, A., & Muskhelishvili, G. (2005). DNA supercoiling-a global transcriptional regulator for enterobacterial growth? Nature Reviews Microbiology, 3, 157-169. doi:10.1038/nrmicro1088
-
(2005)
Nature Reviews Microbiology
, vol.3
, pp. 157-169
-
-
Travers, A.1
Muskhelishvili, G.2
-
72
-
-
34249819336
-
Microrna-mediated feedback and feedforward loops are recurrent network motifs in mammals
-
June, doi:10.1016/j. molcel.2007.05.018
-
Tsang, J., Zhu, J., & van Oudenaarden, A. (2007, June). MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Molecular Cell, 26(5), 753-767. doi:10.1016/j. molcel.2007.05.018
-
(2007)
Molecular Cell
, vol.26
, Issue.5
, pp. 753-767
-
-
Tsang, J.1
Zhu, J.2
van Oudenaarden, A.3
-
73
-
-
84898499296
-
Fdr controlling procedure for mult-stage analysis
-
Working paper series, paper 239
-
Tuglus, C., & van der Laan, M. (2008). FDR controlling procedure for mult-stage analysis. U. C. Berkeley Div. Biostsat. Working paper series, paper 239.
-
(2008)
U. C. Berkeley Div. Biostsat
-
-
Tuglus, C.1
van der Laan, M.2
-
74
-
-
0013059825
-
-
In A. H. Taub (Ed.), New York: Macmillan
-
von Neumann, J. (2001). In A. H. Taub (Ed.), J. von Neumann, Collected Works, 5, 288. New York: Macmillan.
-
(2001)
J. Von Neumann, Collected Works
, vol.5
, pp. 288
-
-
von Neumann, J.1
-
75
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
doi:10.1038/30918
-
Watts, D. J., & Strogatz, S. H. (1998). Collective dynamics of 'small-world' networks. Nature, 393, 440-442. doi:10.1038/30918
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
76
-
-
0001560594
-
On the distribution of the roots of certain symmetric matrices
-
doi:10.2307/1970008
-
Wigner, E. (1958). On the distribution of the roots of certain symmetric matrices. The Annals of Mathematics, 67, 325-328. doi:10.2307/1970008
-
(1958)
The Annals of Mathematics
, vol.67
, pp. 325-328
-
-
Wigner, E.1
-
77
-
-
35949018560
-
Statistical mechanics of cellular automata
-
doi:10.1103/RevModPhys.55.601
-
Wolfram, S. (1983). Statistical mechanics of cellular automata. Reviews of Modern Physics, 55, 601. doi:10.1103/RevModPhys.55.601
-
(1983)
Reviews of Modern Physics
, vol.55
, pp. 601
-
-
Wolfram, S.1
-
78
-
-
0042697343
-
The evolution of transcriptional regulation in eukaryotes
-
doi:10.1093/molbev/msg140
-
Wray, G. A., Hahn, M. W., Abouheif, E., Balhoff, J. P., Pizer, M., Rockman, V., & Romano, L. A. (2003). The evolution of transcriptional regulation in eukaryotes. Molecular Biology and Evolution, 20, 1377-1419. doi:10.1093/molbev/msg140
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 1377-1419
-
-
Wray, G.A.1
Hahn, M.W.2
Abouheif, E.3
Balhoff, J.P.4
Pizer, M.5
Rockman, V.6
Romano, L.A.7
-
79
-
-
0025809949
-
Two divergently transcribed genes, soxr and soxs, control a superoxide response regulon of escherichia coli
-
Wu, J., & Weiss, B. (1991). Two divergently transcribed genes, soxr and soxs, control a superoxide response regulon of escherichia coli. Journal of Bacteriology, 173(9), 2864-2871.
-
(1991)
Journal of Bacteriology
, vol.173
, Issue.9
, pp. 2864-2871
-
-
Wu, J.1
Weiss, B.2
-
80
-
-
33748700193
-
Synchronization of rössler oscillators on scale-free topologies
-
doi:10.1016/j.physa.2006.04.116
-
Yook, S.-H., & Meyer-Ortmanns, H. (2006). Synchronization of Rössler oscillators on scale-free topologies. Physica A, 371, 781-789. doi:10.1016/j.physa.2006.04.116
-
(2006)
Physica A
, vol.371
, pp. 781-789
-
-
Yook, S.-H.1
Meyer-Ortmanns, H.2
|