The population and evolutionary dynamics of vibrio cholerae and its bacteriophage: Conditions for maintaining phage-limited communities

American Naturalist

Volumn 178, Issue 6, 2011, Pages 715-725

  Wei, Yan ^a   Kirby, Amy ^a   Levin, Bruce R ^a  

^a EMORY UNIVERSITY   (United States)

Author keywords

Bacteria; Bacteriophage; Coevolution; Continuous cultures; Mathematical models; Population dynamics

Indexed keywords

BACTERIOPHAGE; BACTERIUM; COEVOLUTION; HOST-PARASITOID INTERACTION; MICROBIAL COMMUNITY; NUMERICAL MODEL; PARASITOID;

ARTICLE; BACTERIAL COUNT; BACTERIOPHAGE; BIOLOGICAL MODEL; COMPUTER SIMULATION; EVOLUTION; GENETICS; PHYSIOLOGY; POPULATION DENSITY; POPULATION DYNAMICS; SPECIES DIFFERENCE; VIBRIO CHOLERAE; VIROLOGY;

BACTERIOPHAGES; BIOLOGICAL EVOLUTION; COLONY COUNT, MICROBIAL; COMPUTER SIMULATION; MODELS, BIOLOGICAL; POPULATION DENSITY; POPULATION DYNAMICS; SPECIES SPECIFICITY; VIBRIO CHOLERAE O1;

BACTERIA (MICROORGANISMS); VIBRIO CHOLERAE;

EID: 81355132522     PISSN: 00030147     EISSN: None     Source Type: Journal    
DOI: 10.1086/662677     Document Type: Article

References (37)

1. Balaban, N. Q., J. Merrin, R. Chait, L. Kowalik, and S. Leibler. 2004. Bacterial persistence as a phenotypic switch. Science 305:1622-1625.
2. Barksdale, L., and S. B. Arden. 1974. Persisting bacteriophage infections, lysogeny, and phage conversions. Annual Review of Microbiology 28:265-299.
3. Barrangou, R., C. Fremaux, H. Deveau, M. Richards, P. Boyaval, S. Moineau, D. A. Romero, et al. 2007. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:1709-1712.
4. Bigger, J. W. 1944. Treatment of staphylococcal infections with penicillin by intermittent sterilisation. Lancet 2:497-500.
5. Buckling, A., and P. B. Rainey. 2002. Antagonistic coevolution between a bacterium and a bacteriophage. Proceedings of the Royal Society B: Biological Sciences 269:931-936.
6. Cerca, N., R. Oliveira, and J. Azeredo. 2007. Susceptibility of Staphylococcus epidermidis planktonic cells and biofilms to the lytic action of staphylococcus bacteriophage K. Letters in Applied Microbiology 45:313-317.
7. Chao, L., B. R. Levin, and F. M. Stewart. 1977. A complex community in a simple habitat: experimental study with bacteria and phage. Ecology 58:369-378.
8. Forde, S. E., R. E. Beardmore, I. Gudelj, S. S. Arkin, J. N. Thompson, and L. D. Hurst. 2008. Understanding the limits to generalizability of experimental evolutionary models. Nature 455:220-244.
9. Freidmann, H. C. 2004. From "Butyribacterium" to "E. coli:" an essay on unity in biochemistry. Perspecitves on Biology and Medicine 47:47-66.
10. Gomez, P., and A. Buckling. 2011. Bacteria-phage antagonistic coevolution in soil. Science 332:106-109.
11. Hairston, N. G., F. E. Smith, and L. R. Slobodkin. 1960. Community structure, population control and competition. American Naturalist 94:421-425.
12. Hammer, S. M., K. E. Squires, M. D. Hughes, J. M. Grimes, L. M. Demeter, J. S. Currier, J. J. Eron, et al. 1997. A controlled trial of two nucleoside analogues plus indinavir in persons with human immunodeficiency virus infection and CD4 cell counts of 200 per cubic millimeter or less. New England Journal of Medicine 337: 725-733.
13. Harwood, C., and M. Buckley. 2008. The uncharted microbial world: microbes and their relative activities in the environment. American Academy of Microbiology, Washington, DC.
14. Jansen, R., J. D. Embden, W. Gaastra, and L. M. Schouls. 2002. Identification of genes that are associated with DNA repeats in prokaryotes. Molecular Microbiology 43:1565-1575.
15. Korona, R., and B. R. Levin. 1993. Phage-mediated selection and the evolution and maintenance of restriction-modification. Evolution 47:556-575.
16. Lenski, R. E., and B. R. Levin. 1985. Constraints on the coevolution of bacteria and virulent phage: a model, some experiments, and predictions for natural communities. American Naturalist 125: 585-602.
17. Levin, B. R. 2010. Nasty viruses, costly plasmids, population dynamics, and the conditions for establishing and maintaining CRISPRmediated adaptive immunity in bacteria. PLoS Genetics 6: e1001171.
18. Levin, B. R., F. M. Stewart, and L. Chao. 1977. Resource-limited growth, competition, and predation: a model and experimental studies with bacteria and bacteriophage. American Naturalist 111: 3-24.
19. Lwoff, A. 1953. Lysogeny. Bacteriology Review 17:269-337.
20. Lwoff, A. 1966. The prophage and I. 88-99 in J. Cairns, G. S. Stent, and J. D. Watson, eds. Phage and the origins of molecular biology. Cold Spring Harbor Laboratory of Quantitative Biology, Cold Spring Harbor, NY.
21. Middelboe, M. 2000. Bacterial growth rate and marine virus-host dynamics. Microbial Ecology 40:114-124.
22. Mizoguchi, K., M. Morita, C. R. Fischer, M. Yoichi, Y. Tanji, and H. Unno. 2003. Coevolution of bacteriophage PP01 and Escherichia coli O157: H7 in continuous culture. Applied and Environmental Microbiology 69:170-176.
23. Monod, J. 1949. The growth of bacterial cultures. Annual Review of Microbiology 3:371-394.
24. Onyebujoh, P., A. Zumla, I. Ribeiro, R. Rustomjee, P. Mwaba, M. Gomes, and J. M. Grange. 2005. Treatment of tuberculosis: present status and future prospects. Bulletin of the World Health Organization 83:857-865.
25. Pearl, S., C. Gabay, R. Kishony, A. Oppenheim, and N. Q. Balaban. 2008. Nongenetic individuality in the host-phage interaction. PLoS Biology 6:e120.
26. Schrag, S. J., and J. E. Mittler. 1996. Host-parasite coexistence: the role of spatial refuges in stabilizing bacteria-phage interactions. American Naturalist 148:348-377.
27. Stewart, F. M., and B. R. Levin. 1984. The population biology of bacterial viruses: why be temperate. Theoretical Population Biology 26:93-117.
28. Suttle, C. A. 2005. Viruses in the sea. Nature 437:356-361.
29. Travisano, M., and R. E. Lenski. 1996. Long-term experimental evolution in Escherichia coli. IV. Targets of selection and the specificity of adaptation. Genetics 143:15-26.
30. Vale, P. F., and T. J. Little. 2010. CRISPR-mediated phage resistance and the ghost of coevolution past. Proceedings of the Royal Society B: Biological Sciences 277:2097-2103.
31. Waterbury, J. B., and F. W. Valois. 1993. Resistance to co-occurring phages enables marine synechococcus communities to coexist with cyanophages abundant in seawater. Applied and Environmental Microbiology 59:3393-3399.
32. Wei, Y., P. Ocampo, and B. R. Levin. 2010. An experimental study of the population and evolutionary dynamics of Vibrio cholerae O1 and the bacteriophage JSF4. Proceedings of the Royal Society B: Biological Sciences 277:3247-3254.
33. Weigle, J. J., and M. Delbrück. 1952. Mutual exclusion by an infecting phage and a carried phage. Journal of Bacteriology 62:302-318.
34. Weinbauer, M. G. 2004. Ecology of prokaryotic viruses. FEMS Microbiology Reviews 28:127-181.
35. Weitz, J. S., H. Hartman, and S. A. Levin. 2005. Coevolutionary arms races between bacteria and bacteriophage. Proceedings of the National Academy of Sciences of the USA 102:9535-9540.
36. Wichman, H. A., J. Millstein, and J. J. Bull. 2005. Adaptive molecular evolution for 13,000 phage generations: a possible arms race. Genetics 170:19-31.
37. Wiuff, C., R. M. Zappala, R. R. Regoes, K. N. Garner, F. Baquero, and B. R. Levin. 2005. Phenotypic tolerance: antibiotic enrichment of noninherited resistance in bacterial populations. Antimicrobial Agents and Chemotherapy 49:1483-1494.