Adaptation of barley to mild winters: A role for PPDH2

BMC Plant Biology

Volumn 11, Issue , 2011, Pages

  Casao, M Cristina ^a   Karsai, Ildiko ^b   Igartua, Ernesto ^a   Gracia, M Pilar ^a   Veisz, Otto ^b   Casas, Ana M ^a  

^a CSIC   (Spain)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

HORDEUM;

VEGETABLE PROTEIN;

ACCLIMATIZATION; ALLELE; ARTICLE; CLIMATE CHANGE; FLOWER; GENE EXPRESSION REGULATION; GENETICS; GENOTYPING TECHNIQUE; GEOGRAPHY; HORDEUM; METABOLISM; PHOTOPERIODICITY; PHYSIOLOGY; PLANT GENE; SEASON;

ACCLIMATIZATION; ALLELES; CLIMATE CHANGE; FLOWERS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENOTYPING TECHNIQUES; GEOGRAPHY; HORDEUM; PHOTOPERIOD; PLANT PROTEINS; SEASONS;

EID: 81255178664     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-11-164     Document Type: Article

References (51)

1. Laurie DA, Pratchett N, Bezant JH, Snape JW. RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter × spring barley Hordeum vulgare L. cross. Genome 1995, 38:575-585. 10.1139/g95-074, 18470191.
2. Trevaskis B, Bagnall DJ, Ellis MH, Peacock WJ, Dennis ES. MADS box genes control vernalization-induced flowering in cereals. P Natl Acad Sci USA 2003, 100:13099-13104.
3. Flood RG, Halloran GM. The nature and duration of gene action for vernalization response in wheat. Ann Bot 1984, 53:363-368.
4. Trevaskis B, Hemming MN, Dennis ES, Peacock WJ. The molecular basis of vernalization-induced flowering in cereals. Trends Plant Sci 2007, 12:352-357. 10.1016/j.tplants.2007.06.010, 17629542.
5. Takahashi R, Yasuda S. Genetics of earliness and growth habit in barley. Barley Genetics II 1971, 388-408. Washington State University Press, Pullman, WA, Nilan RA.
6. Distelfeld A, Li C, Dubcovsky J. Regulation of flowering in temperate cereals. Curr Opin Plant Biol 2009, 12:178-184. 10.1016/j.pbi.2008.12.010, 19195924.
7. Karsai I, Szu{double acute}cs P, Mészáros K, Filichkina T, Hayes PM, Skinner JS, Láng L, Bedo{double acute} Z. The VRN-H2 locus is a major determinant of flowering time in a facultative × winter growth habit barley Hordeum vulgare L. mapping population. Theor Appl Genet 2005, 110:1458-1466. 10.1007/s00122-005-1979-7, 15834697.
8. Trevaskis B. The central role of the VERNALIZATION1 gene in the vernalization response of cereals. Funct Plant Biol 2010, 37:479-487.
9. Hemming MN, Peacock WJ, Dennis ES, Trevaskis B. Low-temperature and daylength cues are integrated to regulate FLOWERING LOCUS T in barley. Plant Physiol 2008, 147:355-366. 10.1104/pp.108.116418, 2330320, 18359843.
10. Fu D, Szu{double acute}cs P, Yan L, Helguera M, Skinner J, Hayes P, Dubcovsky J. Large deletions within the first intron of the VRN-1 are associated with spring growth habit in barley and wheat. Mol Genet Genomics 2005, 273:54-65. 10.1007/s00438-004-1095-4, 15690172.
11. Cockram J, Chiapparino E, Taylor SA, Stamati K, Donini P, Laurie DA, O'Sullivan DM. Haplotype analysis of vernalization loci in European barley germplasm reveals novel VRN-H1 alleles and a predominant winter VRN-H1/VRN-H2 multi-locus haplotype. Theor Appl Genet 2007, 115:993-1001. 10.1007/s00122-007-0626-x, 17713756.
12. Szu{double acute}cs P, Skinner JS, Karsai I, Cuesta-Marcos A, Haggard KG, Corey AE, Chen THH, Hayes PM. Validation of the VRN-H2/VRN-H1 epistatic model in barley reveals that intron length variation in VRN-H1 may account for a continuum of vernalization sensitivity. Mol Genet Genomics 2007, 277:249-261. 10.1007/s00438-006-0195-8, 17151889.
13. Hemming MN, Fieg S, Peacock WJ, Dennis ES, Trevaskis B. Regions associated with repression of the barley (Hordeum vulgare) VERNALIZATION1 gene are not required for cold induction. Mol Genet Genomics 2009, 282:107-117. 10.1007/s00438-009-0449-3, 19404679.
14. Casao MC, Igartua E, Karsai I, Lasa JM, Gracia MP, Casas AM. Expression analysis of vernalization and day-length response genes in barley (Hordeum vulgare L.) indicates that VRNH2 is a repressor of PPDH2 (HvFT3) under long days. J Exp Bot 2011, 62:1939-1949. 10.1093/jxb/erq382, 3060678, 21131547.
15. Yan L, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen JL, Echenique V, Dubcovsky J. The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science 2004, 303:1640-1644. 10.1126/science.1094305, 15016992.
16. Dubcovsky J, Chen C, Yan L. Molecular characterization of the allelic variation at the VRN-H2 vernalization locus in barley. Mol Breeding 2005, 15:395-407.
17. von Zitzewitz J, Szu{double acute}cs P, Dubcovsky J, Yan L, Pecchioni N, Francia E, Casas A, Chen THH, Hayes PM, Skinner JS. Molecular and structural characterization of barley vernalization genes. Plant Mol Biol 2005, 59:449-467. 10.1007/s11103-005-0351-2, 16235110.
18. Dubcovsky J, Loukoianov A, Fu D, Valarik M, Sanchez A, Yan L. Effect of photoperiod on the regulation of wheat vernalization genes VRN1 and VRN2. Plant Mol Biol 2006, 60:469-480. 10.1007/s11103-005-4814-2, 16525885.
19. Trevaskis B, Hemming MN, Peacock WJ, Dennis ES. HvVRN2 responds to daylength, whereas HvVRN1 is regulated by vernalization and developmental status. Plant Physiol 2006, 140:1397-1405. 10.1104/pp.105.073486, 1435809, 16500994.
20. Yan L, Fu D, Li C, Blechl A, Tranquilli G, Bonafede M, Sanchez A, Valarik M, Dubcovsky J. The wheat and barley vernalization gene VRN3 is an orthologue of FT. P Natl Acad Sci USA 2006, 103:19581-19586.
21. Faure S, Higgins J, Turner A, Laurie DA. The FLOWERING LOCUS T-like gene family in barley Hordeum vulgare. Genetics 2007, 176:599-609. 10.1534/genetics.106.069500, 1893030, 17339225.
22. Kikuchi R, Kawahigashi H, Ando T, Tonooka T, Handa H. Molecular and functional characterization of PEBP genes in barley reveal the diversification of their roles in flowering. Plant Physiol 2009, 149:1341-1353. 10.1104/pp.108.132134, 2649388, 19168644.
23. Casas AM, Djemel A, Ciudad FJ, Yahiaoui S, Ponce LJ, Contreras-Moreira B, Gracia MP, Lasa JM, Igartua E. HvFT1 (VrnH3) drives latitudinal adaptation in Spanish barleys. Theor Appl Genet 2011, 112:1293-1304.
24. Laurie DA, Pratchett N, Bezant JH, Snape JW. Genetic analysis of a photoperiod response gene on the short arm of chromosome 2 (2H) of Hordeum vulgare. Heredity 1994, 72:619-627.
25. Turner A, Beales J, Faure S, Dunford RP, Laurie DA. The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science 2005, 310:1031-1034. 10.1126/science.1117619, 16284181.
26. Greenup A, Peacock WJ, Dennis ES, Trevaskis B. The molecular biology of seasonal flowering-responses in Arabidopsis and the cereals. Ann Bot 2009, 103:1165-1172. 10.1093/aob/mcp063, 2685306, 19304997.
27. Shimada S, Ogawa T, Kitagawa S, Suzuki T, Ikari C, Shitsukawa N, Abe T, Kawahigashi H, Kikuchi R, Handa H, Murai K. A genetic network of flowering-time genes in wheat leaves, in which an APETALA1/FRUITFULL-like gene, VRN1, is upstream of FLOWERING LOCUS T. Plant J 2009, 58:668-681. 10.1111/j.1365-313X.2009.03806.x, 2721963, 19175767.
28. Higgins JA, Bailey PC, Laurie DA. Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses. PLoS One 2010, 5:e10065. 10.1371/journal.pone.0010065, 2856676, 20419097.
29. Saisho D, Ishii M, Hori K, Sato K. Natural variation of barley vernalization requirements: Implication of quantitative variation of winter growth habit as an adaptive trait in East Asia. Plant Cell Physiol 2011, 52:724-727. 10.1093/pcp/pcr049, 21565909.
30. Jones H, Leigh FJ, Mackay I, Bower MA, Smith LMJ, Charles MP, Jones G, Jones MK, Brown TA, Powell W. Population-based resequencing reveals that the flowering time adaptation of cultivated barley originated east of the Fertile Crescent. Mol Biol Evol 2008, 25:2211-2219. 10.1093/molbev/msn167, 18669581.
31. Cuesta-Marcos A, Szu{double acute}cs P, Close TJ, Filichkin T, Muehlbauer GJ, Smith KP, Hayes PM. Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure. BMC Genomics 2010, 11:707. 10.1186/1471-2164-11-707, 3018479, 21159198.
32. Cockram J, Hones H, O'Sullivan DM. Genetic variation at flowering time loci in wild and cultivated barley. Plant Genet Resour 2011, 9:264-267.
33. Igartua E, Gracia MP, Lasa JM, Medina B, Molina-Cano JL, Montoya JL, Romagosa I. The Spanish barley core collection. Genet Resour Crop Evol 1998, 45:475-481.
34. von Bothmer R, Sato K, Komatsuda T, Yasuda S, Fischbeck G. The domestication of cultivated barley. Diversity in Barley 2003, 9-27. Amsterdam: Elsevier Science, Bothmer R von, Hintum T van, Knüpffer H, Sato K.
35. Cuesta-Marcos A, Igartua E, Ciudad FJ, Codesal P, Russell JR, Molina-Cano JL, Moralejo M, Szu{double acute}cs P, Gracia MP, Lasa JM, Casas AM. Heading date QTL in a spring × winter barley cross evaluated in Mediterranean environments. Mol Breeding 2008, 21:455-471.
36. Boyd WJR, Li CD, Grime CR, Cakir M, Potipibool S, Kaveeta L, Men S, Kamali MRJ, Barr AR, Moody DB, Lance RCM, Logue SJ, Raman H, Rea BJ. Conventional and molecular genetic analysis of factors contributing to variation in the timing of heading among spring barley (Hordeum vulgare L) genotypes grown over a mild winter growing season. Aust J Agric Res 2003, 54:1277-1301.
37. Cuesta-Marcos A, Casas AM, Hayes PM, Gracia MP, Lasa JM, Ciudad F, Codesal P, Molina-Cano JL, Igartua E. Yield QTL affected by heading date in Mediterranean grown barley. Plant Breeding 2009, 128:46-53.
38. Sameri M, Pourkheirandish M, Chen G, Tonooka T, Komatsuda T. Detection of photoperiod responsive and non-responsive flowering time QTL in barley. Breeding Sci 2011, 61:183-188.
39. Cuesta-Marcos A, Casas AM, Yahiaoui S, Gracia MP, Lasa JM, Igartua E. Joint analysis for heading date QTL in small interconnected barley populations. Mol Breeding 2008, 21:383-399.
40. Karsai I, Szu{double acute}cs P, Ko{double acute}szegi B, Hayes PM, Casas AM, Bedo{double acute} Z, Veisz O. Effects of photo and thermo cycles on flowering time in barley: a genetical phenomics approach. J Exp Bot 2008, 59:2707-2715. 10.1093/jxb/ern131, 2486468, 18550600.
41. Evans LT. Short day induction of inflorescence initiation in some winter wheat varieties. Aust J Plant Physiol 1997, 14:277-286.
42. Roberts EH, Summerfield RJ, Cooper JP, Ellis RH. Environmental control of flowering in barley (Hordeum vulgare L). I Photoperiod limits to long-day responses, photoperiod-insensitive phases and effects of low temperature and short-day vernalization. Ann Bot-London 1988, 62:127-144.
43. King RW, Heide OM. Seasonal flowering and evolution: the heritage from Charles Darwin. Funct Plant Biol 2009, 36:1027-1036.
44. Muñoz-Amatriaín M, Cistué L, Xiong Y, Bilgic H, Budde AD, Schmitt MR, Smith KP, Hayes PM, Muehlbauer GJ. Structural and functional characterization of a winter malting barley. Theor Appl Genet 2010, 120:971-984. 10.1007/s00122-009-1225-9, 19960335.
45. von Zitzewitz J, Cuesta-Marcos A, Condon F, Castro AJ, Chao S, Corey A, Filichkin T, Fisk SP, Gutierrez L, Haggard K, Karsai I, Muehlbauer GJ, Smith KP, Veisz O, Hayes PM. The genetics of winterhardiness in barley: perspectives from genome-wide association mapping. Plant Genome 2011, 4:76-91.
46. Pan A, Hayes PM, Chen F, Chen THH, Blake T, Wright S, Karsai I, Bedö Z. Genetic analysis of the components of winterhardiness in barley (Hordeum vulgare L.). Theor Appl Genet 1994, 89:900-910.
47. Fowler DB, Breton G, Limin AE, Mahfoozi S, Sarhan F. Photoperiod and temperature interactions regulate low-temperature-induced gene expression in barley. Plant Physiol 2001, 127:1676-1681. 10.1104/pp.010483, 133572, 11743112.
48. Zadoks JC, Chang TT, Konzak CF. A decimal code for the growth stages of cereals. Weed Res 1974, 14:415-421.
49. SAS I. SAS/STATTM User's Guide Release 6.03 Edition. 1998, Cary: SAS Institute, Inc.
50. Yuan JS, Reed A, Chen F, Stewart CN. Statistical analysis of real-time PCR data. BMC Bioinformatics 2006, 7:85. 10.1186/1471-2105-7-85, 1395339, 16504059.
51. Karsai I, Hayes PM, Kling J, Matus IA, Mészáros K, Láng L, Bedo{double acute} Z, Sato K. Genetic variation in component traits of heading date in Hordeum vulgare subsp. spontaneum accessions characterized in controlled environments. Crop Sci 2004, 44:1622-1632.