Identification of three novel antisense RNAs in the fur locus from unicellular cyanobacteria

Microbiology

Volumn 157, Issue 12, 2011, Pages 3398-3404

  Sevilla, Emma ^a   Martín Luna, Beatriz ^a   González, Andrés ^a   Gonzalo Asensio, Jesús A ^b   Peleato, María Luisa ^a   Fillat, María F ^a  

^a UNIVERSITY OF ZARAGOZA   (Spain)

^b HOSPITAL UNIVERSITARIO MIGUEL SERVET   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY RNA; FERRIC UPTAKE REGULATOR; TRANSCRIPTOME;

ARTICLE; CONTROLLED STUDY; GENE LOCUS; GENETIC TRANSCRIPTION; MICROCYSTIS AERUGINOSA; NONHUMAN; OPERON; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; SYNECHOCYSTIS;

ANABAENA; BACTERIAL PROTEINS; CONSERVED SEQUENCE; GENES; MICROCYSTIS; OPERON; REPRESSOR PROTEINS; RNA, ANTISENSE; SYNECHOCYSTIS;

EID: 80955142835     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.048231-0     Document Type: Article

References (23)

1. Axmann, I. M., Kensche, P., Vogel, J., Kohl, S., Herzel, H. & Hess, W. R. (2005). Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol 6, R73.
2. Bagg, A. & Neilands, J. B. (1987). Ferric uptake regulation protein acts as a repressor, employing iron (II) as a cofactor to bind the operator of an iron transport operon in Escherichia coli. Biochemistry 26, 5471-5477
3. Dühring, U., Axmann, I. M., Hess, W. R. & Wilde, A. (2006). An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc Natl Acad Sci U S A 103, 7054-7058
4. Fuangthong, M., Herbig, A. F., Bsat, N. & Helmann, J. D. (2002). Regulation of the Bacillus subtilis fur and perR genes by PerR: not all members of the PerR regulon are peroxide inducible. J Bacteriol 184, 3276-3286
5. Hernández, J. A., López-Gomollón, S., Bes, M. T., Fillat, M. F. & Peleato, M. L. (2004). Three fur homologues from Anabaena sp. PCC7120: exploring reciprocal protein-promoter recognition. FEMS Microbiol Lett 236, 275-282
6. Hernández, J. A., Muro-Pastor, A. M., Flores, E., Bes, M. T., Peleato, M. L. & Fillat, M. F. (2006). Identification of a furA cis antisense RNA in the cyanobacterium Anabaena sp. PCC 7120. J Mol Biol 355, 325-334
7. Hernández, J. A., Alonso, I., Pellicer, S., Luisa Peleato, M., Cases, R., Strasser, R. J., Barja, F. & Fillat, M. F. (2010). Mutants of Anabaena sp. PCC 7120 lacking alr1690 and α-furA antisense RNA show a pleiotropic phenotype and altered photosynthetic machinery. J Plant Physiol 167, 430-437
8. Koide, T., Reiss, D. J., Bare, J. C., Pang, W. L., Facciotti, M. T., Schmid, A. K., Pan, M., Marzolf, B., Van, P. T. & other authors (2009). Prevalence of transcription promoters within archaeal operons and coding sequences. Mol Syst Biol 5, 285.
9. López-Gomollón, S., Hernández, J. A., Pellicer, S., Angarica, V. E., Peleato, M. L. & Fillat, M. F. (2007). Cross-talk between iron and nitrogen regulatory networks in Anabaena (Nostoc) sp. PCC 7120: identification of overlapping genes in FurA and NtcA regulons. J Mol Biol 374, 267-281
10. Martín-Luna, B., Hernández, J. A., Bes, M. T., Fillat, M. F. & Peleato, M. L. (2006). Identification of a ferric uptake regulator from Microcystis aeruginosa PCC7806. FEMS Microbiol Lett 254, 63-70
11. Massé, E. & Gottesman, S. (2002). A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci U S A 99, 4620-4625
12. Mitschke, J., Georg, J., Scholz, I., Sharma, C. M., Dienst, D., Bantscheff, J., Voß, B., Steglich, C., Wilde, A. & other authors (2011). An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci U S A 108, 2124-2129
13. Nagalakshmi, U., Wang, Z., Waern, K., Shou, C., Raha, D., Gerstein, M. & Snyder, M. (2008). The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320, 1344-1349
14. Outten, F. W., Wood, M. J., Munoz, F. M. & Storz, G. (2003). The SufE protein and the SufBCD complex enhance SufS cysteine desulfurase activity as part of a sulfur transfer pathway for Fe-S cluster assembly in Escherichia coli. J Biol Chem 278, 45713-45719
15. Outten, F. W., Djaman, O. & Storz, G. (2004). A suf operon requirement for Fe-S cluster assembly during iron starvation in Escherichia coli. Mol Microbiol 52, 861-872
16. Rippka, R., Deruelles, J., Waterbury, J. B., Herdman, M. & Stainer, R. Y. (1979). Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J Gen Microbiol 111, 1-61
17. Seki, A., Nakano, T., Takahashi, H., Matsumoto, K., Ikeuchi, M. & Tanaka, K. (2006). Light-responsive transcriptional regulation of the suf promoters involved in cyanobacterium Synechocystis sp. PCC 6803 Fe-S cluster biogenesis. FEBS Lett 580, 5044-5048
18. Sola-Landa, A., Rodríguez-García, A., Franco-Domínguez, E. & Martín, J. F. (2005). Binding of PhoP to promoters of phosphateregulated genes in Streptomyces coelicolor: identification of PHO boxes. Mol Microbiol 56, 1373-1385
19. Večerek, B., Moll, I. & Bläsi, U. (2007). Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding. EMBO J 26, 965-975
20. Voß, B., Georg, J., Schön, V., Ude, S. & Hess, W. R. (2009). Biocomputational prediction of non-coding RNAs in model cyanobacteria. BMC Genomics 10, 123.
21. Waldbeser, L. S., Chen, Q. & Crosa, J. H. (1995). Antisense RNA regulation of the fatB iron transport protein gene in Vibrio anguillarum. Mol Microbiol 17, 747-756
22. Waters, L. S. & Storz, G. (2009). Regulatory RNAs in bacteria. Cell 136, 615-628
23. Zhang, Z., Gosset, G., Barabote, R., Gonzalez, C. S., Cuevas, W. A. & Saier, M. H., Jr (2005). Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli. J Bacteriol 187, 980-990.