Analysis of genetic diversity in Acorus calamus populations in South and North East India using ISSR markers

Biochemical Systematics and Ecology

Volumn 40, Issue , 2012, Pages 156-161

  Abdul Kareem, V K ^a   Rajasekharan, P E ^a   Ravish, B S ^a   Mini, S ^a   Sane, Anuradha ^a   Vasantha Kumar, T ^a  

^a INDIAN INSTITUTE OF HORTICULTURAL RESEARCH   (India)

Author keywords

Acorus calamus; Clonal plant; Genetic diversity; ISSR; Sweet flag; UPGMA

Indexed keywords

ALGORITHM; CLONAL ORGANISM; DIVERGENCE; DIVERSITY INDEX; ENDANGERED SPECIES; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC MARKER; GEOGRAPHICAL DISTRIBUTION; HERB; MEDICINAL PLANT; MITOCHONDRIAL DNA; MOLECULAR ANALYSIS; MONOCOTYLEDON; POLYMERASE CHAIN REACTION; POLYMORPHISM; POPULATION ESTIMATION;

INDIA;

ACORUS CALAMUS;

EID: 80855156564     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2011.09.012     Document Type: Article

References (23)

1. Agarwal S.L., Dandiya P.C., Singh K.P., Arora R.B. A note on the preliminary studies of certain pharmacological actions of Acorus calamus. J. Am. Pharm. Assoc. 1956, 45:655-656.
2. Ahlawat A., Katoch M., Ram G., Ahuja A. Genetic diversity in Acorus calamus L. as revealed by RAPD markers and its relationship with β-asarone content and ploidy level. Sci. Hort. 2010, 124:294-297.
3. Doyle J.J., Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 1987, 19:11-15.
4. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
5. Ge X.J., Sun M. Population genetic structure of Ceriops tagal (Rhizophoraceae) in Thailand and China. Wetland Ecol. Manage. 2001, 9:203-209.
6. Hijmans R.J., Guarino L., Jarvis A., O'Brien R., Mathur P., Bussink C., Cruz M., Barrantes I., Rojas E. DIVA-GIS Version 5.2. Manual 2005, Available at:. http://www.diva-gis.
7. Hangelbroek H.H., Ouborg N.J., Santamaria L., Schwenk K. Clonal diversity and structure within a population of pondweed Potamogeton pectinatus foraged by Bewick's Swans. Mol. Ecol. 2002, 11:2137-2150.
8. Hogbin P.M., Peakall R. Evaluation of the conservation of genetic research to the management of endangered plant Zieria prostrata. Conserv. Biol. 1999, 13:514-522.
9. Jian S.G., Tang T., Zhong Y., Shi S.H. Variation in inter-simple sequence repeat (ISSR) in mangrove and non-mangrove population of Heritiera littoralis (Sterculiaceae) from China and Australia. Aquat. Bot. 2004, 79:75-86.
10. Motley T.J. The ethnobotany of sweet flag, Acorus calamus (Araceae). Econ. Bot. 1994, 48:397-412.
11. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U. S. A. 1973, 70:3321-3323.
12. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
13. Nei M. Molecular Evolutionary Genetics 1987, Columbia University Press, New York, pp. 176-187.
14. Ogra R.K., Mohanpuria P., Sharma U.K., Sharma M., Sinha A.K., Ahuja P.S. Indian calamus (Acorus calamus L.): not a tetraploid. Curr. Sci. 2009, 97(11):1644-1647.
15. Pai, A., 2005. The population ecology of a perennial clonal herb Acorus calamus L. (Acoraceae) in Southeast Ohio, USA. PhD thesis, Ohio University, USA.
16. Peakall R., Smouse P.E. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 2006, 6:288-295.
17. Raina V.K., Srivastava S.K., Syamasunder K.V. Essential oil composition of Acorus calamus L. from the lower region of the Himalayas. Flavour. Frag. J. 2003, 18:18-20.
18. Marques de Sa J.P. Applied Statistics: Using SPSS, STATISTICA, MatLab and R 2007, Springer-Verlag, Berlin, doi:519.50285 SAJ 016717. second ed.
19. Santamaria L. Why are most aquatic plants widely distributed? Dispersal, clonal growth and small-scale heterogeneity in a stressful environment. Acta Oecol. 2002, 23:137-154.
20. Schaal B.A., Leverich W.J., Rogstad S.H. Comparison of methods for assessing genetic variation in plant conservation biology. Genetics and Conservation of Rare Plants 1991, 123-134. Oxford University Press, New York. D.A. Falk, K.E. Holsinger (Eds.).
21. Slatin M. Gene flow and geographic structure of natural populations. Science (Washington, DC) 1987, 236:787-792.
22. Yeh, F.C., Yang, R.C., Boyle, T.B.J., Ye, Z.H., Mao, J.X., 1999. POPGENE 3.2, User-Friendly Shareware for Population Genetic Analysis. Molecular Biology and Biotechnology Center, University of Alberta, Edmonton. Available from: . http://ualberta.ca/wfeyeh.
23. Zhao W.G., Zhang J.Q., Wangi Y.H., Chen T.T., Yin Y., Huang Y.P., Pan Y., Yang Y. Analysis of genetic diversity in wild populations of mulberry from western part of Northeast China determined by ISSR markers. J. Genet. Mol. Biol. 2000, 196-203.