Molecular phylogeny of duvenhage virus

South African Journal of Science

Volumn 107, Issue 11-12, 2011, Pages

  Van Eeden, Charmaine ^a   Markotter, Wanda ^a   Nel, Louis H ^a  

^a UNIVERSITY OF PRETORIA   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

BAT; EPIDEMIOLOGY; GENETIC ANALYSIS; GENOTYPE; GEOGRAPHICAL DISTRIBUTION; INSECTIVORE; MOLECULAR ANALYSIS; PHYLOGENY; SPECIES DIVERSITY; VIRUS;

KENYA;

DUVENHAGE VIRUS; LYSSAVIRUS; RABIES VIRUS;

EID: 80855127562     PISSN: 00382353     EISSN: 19967489     Source Type: Journal    
DOI: 10.4102/sajs.v107i11/12.177     Document Type: Article

References (36)

1. International Committee for Taxonomy of Viruses. Official taxonomy: Updates since the 8th report [document on the Internet]. c2009 [cited 2008 Sept. 12]. Available from: http://talk.ictvonline.org/media/p/1208.aspx
2. Kuzmin IV, Orciari LA, Yohko TA, et al. Bat lyssaviruses (Aravan and Khujand) from central Asia: Phylogenetic relationships according to the N, P and G gene sequences. Virus Res. 2003;97:65-79. http://dx.doi.org/10.1016/S0168- 1702(03)00217-X (Pubitemid 37352929)
3. Kuzmin IV, Hughes GJ, Botvinkin AD, Orciari LA, Rupprecht CE. Phylogenetic relationships of Irkut and West Caucasian bat viruses within the Lyssavirus genus and suggested quantitative criteria based on the N gene sequence for lyssaviruses genotype definition. Virus Res. 2005;111:28-43 http://dx.doi.org/10.1016/j.virusres.2005.03.008, PMid:15896400 (Pubitemid 40724444)
4. Kuzmin IV, Neizgoda M, Franka R, et al. Possible emergence of West Caucasian bat virus in Africa. Emerg Infect Dis. 2008;14:1887-1889. http://dx.doi.org/10.3201/eid1412.080750, PMid:19046512, PMCid:2634633
5. Kuzmin IV, Mayer AE, Niezgoda M, et al. Shimoni bat virus, a new representative of the Lyssavirus genus. Virus Res. 2010;149:197-210. http://dx.doi.org/10.1016/j.virusres.2010.01.018, PMid:20138934
6. Badrane H, Bahloul C, Perrin P, Tordo N. Evidence of two Lyssavirus phylogroups with distinct pathogenicity and immunogenicity. J Virol. 2001;75:3268-3276. http://dx.doi.org/10.1128/JVI.75.7.3268-3276.2001, PMid:11238853, PMCid:114120 (Pubitemid 32225890)
7. Fekadu M, Shaddock JH, Sanderlin DW, Smith JS. Efficacy of rabies vaccines against Duvenhage virus isolated from European house bats (Eptesicusserotinus), classic rabies and rabies-related viruses. Vaccine. 1988;6:533-539. http://dx.doi.org/10.1016/0264-410X(88)90107-7 (Pubitemid 19002012)
8. Bahloul C, Jacob Y, Tordo N, Perrin P. DNA-based immunization for exploring the enlargement of immunological cross-reactivity against the lyssaviruses. Vaccine. 1998;16:417-425. http://dx.doi.org/10.1016/S0264-410X(97) 00204-1 (Pubitemid 28010779)
9. Benmansour A, Leblois H, Coulon P. Antigenicity of rabies virus glycoprotein. J Virol. 1991;65:4198-4203. PMid:1712859, PMCid:248855
10. Meredith CD, Rossouw AP, Van Praag Koch H. An unusual case of human rabies thought to be of chiropteran origin. S Afr Med J. 1971;45:767-769. PMid:5106834
11. Van der Merwe M. Bats as vectors of rabies. SAfr J Sci. 1982;78:421-422.
12. Miller-Butterworth CM, Eick G, Jacobs DS, Schoeman MC, Harley EH. Genetic and phenotypic differences between South African long-fingered bats, with global Miniopterine phylogeny. J Mammol. 2005;86:1121-1135. http://dx.doi.org/ 10.1644/05-MAMM-A-021R1.1 (Pubitemid 43068498)
13. Foggin CM. Rabies and rabies-related viruses in Zimbabwe: Historical, virological and ecological aspects. PhD thesis, Harare, University of Zimbabwe, 1988.
14. Bourhy H, Kissi B, Lafon M, Sacramento D, Tordo N. Antigenic and molecular characterization of bat rabies virus in Europe. J Clin Microbiol. 1992;30:2419-2426. PMid:1401009, PMCid:265516
15. Davis PL, Holmes EC, Larrous F, et al. Phylogeography, population dynamics and molecular evolution of European bat lyssaviruses. J Virol. 2005;79:10487-10497. http://dx.doi.org/10.1128/JVI.79.16.10487-10497.2005, PMid:16051841, PMCid:1182613 (Pubitemid 41098588)
16. Amengual B, Whitby JE, King A, Serra Cobo J, Bourhy H. Evolution of European bat lyssaviruses. J Gen Virol. 1997;78:2319-2328. PMid:9292021. (Pubitemid 27387047)
17. Serra-Cobo J, Amengual B, Abellan C, Bourhy H. European bat lyssavirus infection in Spanish bat populations. Emerg Infect Dis. 2002;8:413-420. http://dx.doi.org/10.3201/eid0804.010263, PMid:11971777, PMCid:2730232 (Pubitemid 34415205)
18. Mackensie JS, Field HE, Guyatt KJ. Managing emerging diseases borne by fruit bats (flying foxes) with particular reference to henipaviruses and Australian bat lyssavirus. J Appl Microbiol. 2003;94:59-69. http://dx.doi.org/ 10.1046/j.1365-2672.94.s1.7.x
19. Ghatak S, Banerjee R, Agarwak RK, Kapoor KN. Zoonoses and bats: A look from human health viewpoint. J Comm Dis. 2000;32:40-48. PMid:11129564
20. Guyatt KJ, Twin J, Davis P, et al. A molecular epidemiological study of Australian bat lyssavirus. J Gen Virol. 2003;84:485-496. http://dx.doi.org/10. 1099/vir.0.18652-0, PMid:12560583 (Pubitemid 36175725)
21. Paweska JT, Blumberg LH, Liebenberg C, et al. Fatal human infection with rabies-related Duvenhage virus, South Africa. Emerg Infect Dis. 2006;12:1965-1966. PMid:17326954
22. Sabeta CT, Markotter W, Mohale DK, Shumba W, Wandeler AI, Nel LH. Mokola virus in domestic mammals, South Africa. Emerg Infect Dis. 2007;13:1371-1373. PMid:18252112, PMCid:2857310 (Pubitemid 47510302)
23. Markotter W, Kuzmin I, Rupprecht CE, Nel LH. Phylogeny of Lagos bat virus: Challenge for lyssavirus taxonomy. Virus Res. 2008;135:10-21. http://dx.doi.org/10.1016/j.virusres.2008.02.001, PMid:18359532
24. Koprowski H. The mouse inoculation test. In: Meslin FX, Kaplan MM, Koprowski H, editors. Laboratory techniques in rabies. Geneva: World Health Organization, 1996; p. 80-87.
25. Centers for Disease Control. DFA diagnosis [document on the Internet]. c2008 [cited 2009 July 24]. Available from: http://www.cdc.gov/ncidod/dvrd/ Rabies/Professional/Publications/DFA-diagnosis
26. Markotter W, Kuzmin I, Rupprecht CE. Isolation of Lagos bat virus from water mongoose. Emerg Infect Dis. 2006;12:1913-1918. PMid:17326944 (Pubitemid 44904931)
27. Hall TA. BioEdit: A user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Res. 1999;41:95-98.
28. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994;22:4673-4680. http://dx.doi.org/10.1093/nar/22.22.4673, PMid:7984417, PMCid:308517 (Pubitemid 24354800)
29. Kumar S, Tamura K, Nei M. MEGA3: Integrated software for molecular evolutionary genetic analysis and sequence alignment. Brief Bioinform. 2004;5:150-163. http://dx.doi.org/10.1093/bib/5.2.150, PMid:15260895
30. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 1980;15:111-120. http://dx.doi.org/10.1007/BF01731581, PMid:7463489 (Pubitemid 11166431)
31. Saitou N, Nei M. The neighbour-joining method: A new method for constructing phylogenetic trees. Mol Biol Evol. 1987;4:406-425. PMid:3447015
32. Willoughby RE, Tieves KS, Hoffman GM, et al. Survival after treatment of rabies with induction of a coma. New Engl J Med. 2005;352:2508-2514. http://dx.doi.org/10.1056/NEJMoa050382, PMid:15958806 (Pubitemid 41007866)
33. Van Thiel P, Van Den Hoek J, Eftimov F, et al. Fatal case of human rabies (Duvenhage virus) from a bat in Kenya: The Netherlands, December 2007. Eurosurveillance. 2008;13:1.
34. Van Thiel PAM, De Bie RMA, Eftimov F, et al. Fatal human rabies due to Duvenhage virus from a bat in Kenya: Failure of treatment with coma-induction, ketamine and antiviral drugs. PLOS Negl Trop Dis. 2009;3(7):e428. http://dx.doi.org/10.1371/journal.pntd.0000428, PMid:19636367, PMCid:2710506
35. Marston DA, McElhinney LM, Johnson N, et al. Comparative analysis of the full genome sequence of European bat lyssavirus type 1 and 2 with other lyssaviruses and evidence for a conserved transcription termination and polyadenylation motif in the G-L 3' non translated region. J Gen Virol. 2007;88:1302-1314. http://dx.doi.org/10.1099/vir.0.82692-0, PMid:17374776 (Pubitemid 46523521)
36. Kuzmin IV, Wu X, Tordo N, Rupprecht CE. Complete genomes of Aravan, Khujand, Irkut and West Caucasian bat viruses, with special attention to the polymerase gene and non-coding regions. Virus Res. 2008;136:81-90. http://dx.doi.org/10.1016/j.virusres.2008.04.021, PMid:18514350