Phylogeographic relationships in the polypore fungus Pycnoporus inferred from molecular data

FEMS Microbiology Letters

Volumn 325, Issue 1, 2011, Pages 37-48

  Lesage Meessen, Laurence ^a   Haon, Mireille ^a   Uzan, Eva ^a   Levasseur, Anthony ^a   Piumi, François ^a   Navarro, David ^a   Taussac, Sabine ^a   Favel, Anne ^a,b   Lomascolo, Anne ^a,b  

^a Centre International de Ressources Microbiennes Champignons Filamenteux   (France)

^b AIX MARSEILLE UNIVERSITY   (France)

Author keywords

tubulin; ITS; Laccase; Molecular marker; Phylogeny; Pycnoporus

Indexed keywords

INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2; MOLECULAR MARKER; RIBOSOME DNA;

ARTICLE; BETA TUBULIN GENE; CLADISTICS; CONTROLLED STUDY; ENZYME ACTIVITY; FUNGAL GENE; FUNGAL STRAIN; FUNGUS IDENTIFICATION; GENE CLUSTER; GENE SEQUENCE; GEOGRAPHIC DISTRIBUTION; GEOGRAPHIC ORIGIN; LACCASE 3 1 GENE; MICROBIAL DIVERSITY; MOLECULAR DYNAMICS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGEOGRAPHY; PRIORITY JOURNAL; PROTEIN FUNCTION; PYCNOPORUS; PYCNOPORUS CINNABARINUS; PYCNOPORUS PUNICEUS; PYCNOPORUS SANGUINEUS; SPECIES DISTRIBUTION; UNINDEXED SEQUENCE;

CLUSTER ANALYSIS; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; GENES, RRNA; LACCASE; MOLECULAR SEQUENCE DATA; PHYLOGEOGRAPHY; PYCNOPORUS; RNA, FUNGAL; RNA, RIBOSOMAL, 5.8S; SEQUENCE ANALYSIS, DNA; TUBULIN;

FUNGI; PYCNOPORUS (FUNGUS); PYCNOPORUS CINNABARINUS; PYCNOPORUS COCCINEUS; PYCNOPORUS SANGUINEUS;

EID: 80755180957     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2011.02412.x     Document Type: Article

References (43)

1. Baldrian P (2006) Fungal laccases - occurrence and properties. FEMS Microbiol Rev 30: 215-242.
2. Begerow D, Beate J & Oberwinkler F (2004) Evolutionary relationships among β-tubulin gene sequences of basidiomycetous fungi. Mycol Res 108: 1257-1263.
3. Brijwani K, Rigdon A & Vadlani PV (2010) Fungal laccases: production, function, and applications in food processing. Enzyme Res 2010: 149748.
4. Courtecuisse R, Samuels GJ, Hoff M, Rossman AY, Cremers G, Huhndorf SM & Stephenson SL (1996) Check-list of fungi from French Guiana: Studies in the flora of the Guianas, No. 80. Mycotaxon LVII: 1-85.
5. Eggert C, Temp U & Eriksson KEL (1996) The lignolytic system of the white-rot fungus Pycnoporus cinnabarinus: purification and characterization of the laccase. Appl Environ Microbiol 62: 1151-1158.
6. Eggert C, Lafayette P, Temp U, Eriksson KEL & Dean JFD (1998) Molecular analysis of a laccase gene from the white-rot fungus Pycnoporus cinnabarinus. Appl Environ Microbiol 64: 1766-1772.
7. Fries EM (1851) Novae symbolae mycologicae. Nova Acta Regiae Societatis Scientiarum Upsaliensis, Ser 31: 17-136.
8. Froslev TG, Matheny PB & Hibbett DS (2005) Lower level relationships in the mushroom genus Cortinarius (Basidiomycota, Agaricales): a comparison of RPB1, RPB2, and ITS phylogenies. Mol Phylogenet Evol 37: 602-618.
9. Gianfreda L, Xu F & Bollag JM (1999) Laccases: a useful group of oxidoreductive enzymes. Bioremediat J 3: 1-25.
10. Giraud F, Dupont J, Haon M, Bouzid O, Alibeu O, Navarro D, Sage L, Seigle-Murandi F, Asther M & Lesage-Meessen L (2007) Phylogenetic analysis of the Aspergillus niger aggregate in relation to feruloyl esterase activity. Res Microbiol 158: 413-419.
11. Gouret P, Vitiello V, Balandraud N, Gilles A, Pontarotti P & Danchin EGJ (2005) FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform. BMC Bioinformatics 6: 198-219.
12. Hatsch D, Phalip V & Jeltsch JM (2004) Use of genes encoding cellobiohydrolase-C and topoisomerase II as targets for phylogenetic analysis and identification of Fusarium. Res Microbiol 155: 290-296.
13. Herpoël I, Jeller H, Fang G, Petit-Conil M, Bourbonnais R, Robert JL, Asther M & Sigoillot JC (2002) Efficient enzymatic delignification of wheat straw pulp by a sequential xylanase-laccase treatment. J Pulp Paper Sci 28: 67-71.
14. Hibbett DS, Binder M, Bischoff J et al. (2007) A higher-level phylogenetic classification of the fungi. Mycol Res 111: 509-547.
15. Higgins DG, Bleasby AJ & Fuchs R (1991) CLUSTAL W: improved software for multiple alignment. Comput Appl Biosci 8: 189-191.
16. Hilden KS, Bortfeldt R, Hofrichter M, Hatakka A & Lundell TK (2008) Molecular characterization of the basidiomycete isolate Nematoloma frowardii b19 and its manganese peroxidase places the fungus in the corticoid genus Phlebia. Microbiology 154: 2371-2379.
17. Hu H, Jeewon R, Zhou D, Zhou T & Hyde KD (2007) Phylogenetic diversity of endophytic Pestalotiopsis species in Pinus armandii and Ribes spp.: evidence from rDNA and beta-tubulin gene phylogenies. Fungal Divers 24: 1-22.
18. Kamei I, Suhara H & Kondo R (2005) Phylogenetical approach to isolation of white-rot fungi capable of degrading polychlorinated dibenzo-p-dioxin. Appl Microbiol Biotechnol 69: 358-366.
19. Karsten PA (1881) Enumeratio Boletinearum et Polyporearum Fennicarum, systemate novo dispositarum. Rev Mycol, 3: 16-19.
20. de Koker TH, Nakasone KK, Haarhof J & Burdsall HH (2003) Phylogenetic relationships of the genus Phanerochaete inferred from the internal transcribed spacer region. Mycol Res 107: 1032-1040.
21. Lamark J-B (1783) Agaricus ruber. Encycl Méth Bot (Paris) 1: 50.
22. Li DZ (2008) Floristics and plant biogeography in China. J Integr Plant Biol 50: 771-777.
23. Lomascolo A, Cayol JL, Roche M, Guo L, Robert JL, Record E, Lesage-Meessen L, Ollivier B, Sigoillot JC & Asther M (2002) Molecular clustering of Pycnoporus strains from various geographic origins and isolation of monokaryotic strains for laccase hyperproduction. Mycol Res 106: 1193-1203.
24. Lomascolo A, Record E, Herpoël-Gimbert I, Delattre M, Robert JL, Georis J, Dauvrin T, Sigoillot JC & Asther M (2003) Overproduction of laccase by a monokaryotic strain of Pycnoporus cinnabarinus using ethanol as inducer. J Appl Microbiol 94: 618-624.
25. Messerschmidt A & Huber R (1990) The blue oxidases, ascorbate oxidase, laccase and ceruloplasmin: modelling and structural relationships. Eur J Biochem 187: 341-352.
26. Moncalvo J-M & Buchanan PK (2008) Molecular evidence for long distance dispersal across the southern hemisphere in the Ganoderma applanatum-australe species complex (Basidiomycota). Mycol Res 112: 425-436.
27. Nobles MK & Frew BP (1962) Studies in wood-inhabiting hymenomycetes. V. The genus Pycnoporus Karst. Can J Bot 40: 987-1016.
28. Otterbein L, Record E, Longhi S, Asther M & Moukha S (2000) Molecular cloning of the cDNA encoding laccase from Pycnoporus cinnabarinus I-937 and expression in Pichia pastoris. Eur J Biochem 267: 1619-1625.
29. Ryvarden L (1991) Genera of Polypores, nomenclature and taxonomy. Synopsis Fungorum 5. Fungiflora, Oslo.
30. Ryvarden L & Gilbertson RL (1994) Meripilus - Tyromyces. European Polypores, Part 2. Fungiflora, Oslo.
31. Ryvarden L & Johansen I (1980) A preliminary polypore flora of East Africa. Synopsis Fungorum 5. Fungiflora, Oslo.
32. Schmitt I, Partida-Martinez LP, Winkler R, Voigt K, Einax E, Dolz F, Telle S, Wostemeyer J & Hertweck C (2008) Evolution of host resistance in a toxin-producing bacterial-fungal alliance. ISME J 2: 632-641.
33. Shen Q, Geiser DM & Royse DJ (2002) Molecular phylogenetic analysis of Grifola frondosa (maitake) reveals a species partition separating eastern North American and Asian strains. Mycologia 94: 472-482.
34. Sigoillot C, Record E, Belle V, Robert JL, Levasseur A, Punt PJ, van den Hondel CAMJJ, Fournel A, Sigoillot JC & Asther M (2004) Natural and recombinant fungal laccases for paper pulp bleaching. Appl Microbiol Biotechnol 64: 346-352.
35. Takhtajan A (1986) Floristic Regions of the World. University of California Press, Berkeley.
36. Thon MR & Royse DJ (1999) Partial β-tubulin gene sequences for evolutionary studies in the Basidiomycotina. Mycologia 91: 468-474.
37. Tomšovský M, Kolaří M, Pažoutová S & Homolka L (2006) Molecular phylogeny of European Trametes (Basidiomycetes, Polyporales) species based on LSU and ITS (nrDNA) sequences. Nova Hedwigia 82: 269-280.
38. Udvardy MDF (1975) A Classification of the Biogeographical Provinces of the World. IUCN occasional paper No. 1. International Union for Conservation of Nature and Natural Resources, Morges.
39. Uzan E, Nousiainen P, Balland V, Sipila J, Piumi F, Navarro D, Asther M, Record E & Lomascolo A (2010) High-redox potential laccases from the ligninolytic fungi Pycnoporus coccineus and P. sanguineus suitable for white biotechnology: from gene cloning to enzyme characterization and applications. J Appl Microbiol 108: 2199-2213.
40. Uzan E, Portet B, Lubrano C, Milesi S, Favel A, Lesage-Meessen L & Lomascolo A (2011) Pycnoporus laccase-mediated bioconversion of rutin to oligomers suitable for biotechnology applications. Appl Microbiol Biotechnol 90: 97-105.
41. Wang Z, Binder M, Dai YC & Hibbett DS (2004) Phylogenetic relationships of Sparassis inferred from nuclear and mitochondrial DNA and RNA polymerase sequences. Mycologia 96: 1015-1029.
42. White TJ, Bruns T, Lee S & Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications (Innis MA, Gelfand DH, Sninsky JJ & White TJ, eds), pp. 315-322. Academic Press, San Diego.
43. Yao YJ, Pegler DN & Chase MW (2005) Molecular variation in the Postia caesia complex. FEMS Microbiol Lett 242: 109-116.