-
1
-
-
0347537349
-
Photosynthesis and respiration in cyanobacteria
-
Nature Publishing Group, London, United Kingdom
-
Vermaas WFJ. 2001. Photosynthesis and respiration in cyanobacteria, p 245-251. In EncyclopediaofLife Sciences. Nature Publishing Group, London, United Kingdom. http://dx.doi.org/10.1038/npg.els.0001670.
-
(2001)
EncyclopediaofLife Sciences
, pp. 245-251
-
-
Vermaas, W.F.J.1
-
2
-
-
0028891687
-
Physiological ecology of cyanobacteria in microbial mats and other communities
-
Stal LJ. 1995. Physiological ecology of cyanobacteria in microbial mats and other communities. New Phytol. 131:1-32.
-
(1995)
New Phytol
, vol.131
, pp. 1-32
-
-
Stal, L.J.1
-
3
-
-
0035800517
-
Earth history. The rise of atmospheric oxygen
-
Kasting JF. 2001. Earth history. The rise of atmospheric oxygen. Science 293:819-820.
-
(2001)
Science
, vol.293
, pp. 819-820
-
-
Kasting, J.F.1
-
4
-
-
0002795015
-
The oxygen sensitivity of nitrogenase-a problem for biochemists and microorganisms
-
Gallon JR. 1981. The oxygen sensitivity of nitrogenase-a problem for biochemists and microorganisms. Trends Biochem. Sci. 6:19-23.
-
(1981)
Trends Biochem. Sci
, vol.6
, pp. 19-23
-
-
Gallon, J.R.1
-
5
-
-
0035900309
-
Segregation of nitrogen fixation and oxy-genic photosynthesis in the marine cyanobacterium Trichodesmium
-
Berman-Frank I, et al. 2001. Segregation of nitrogen fixation and oxy-genic photosynthesis in the marine cyanobacterium Trichodesmium. Science 294:1534-1537.
-
(2001)
Science
, vol.294
, pp. 1534-1537
-
-
Berman-Frank, I.1
-
6
-
-
0037388041
-
Nitrogen fixation and photosynthetic oxygen evolution in cyanobacteria
-
Berman-Frank I, Lundgren P, Falkowski P. 2003. Nitrogen fixation and photosynthetic oxygen evolution in cyanobacteria. Res. Microbiol. 154: 157-164.
-
(2003)
Res. Microbiol
, vol.154
, pp. 157-164
-
-
Berman-Frank, I.1
Lundgren, P.2
Falkowski, P.3
-
8
-
-
0026684361
-
Oxygen relations of nitrogen fixation in cyanobacteria
-
Fay P. 1992. Oxygen relations of nitrogen fixation in cyanobacteria. Mi-crobiol. Rev. 56:340-373.
-
(1992)
Mi-crobiol. Rev
, vol.56
, pp. 340-373
-
-
Fay, P.1
-
10
-
-
4344611656
-
2 fixation by unicellular di-azotrophs in the oligotrophic Pacific Ocean
-
Montoya JP, et al. 2004. High rates of N2 fixation by unicellular di-azotrophs in the oligotrophic Pacific Ocean. Nature 430:1027-1032.
-
(2004)
Nature
, vol.430
, pp. 1027-1032
-
-
Montoya, J.P.1
-
11
-
-
77949864712
-
2 fixation domain
-
Moisander PH, et al. 2010. Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain. Science 327:1512-1514.
-
(2010)
Science
, vol.327
, pp. 1512-1514
-
-
Moisander, P.H.1
-
12
-
-
0001261872
-
Fermentation metabolism of the unicellular cyanobacterium Cyanothece PCC 7822
-
van der Oost J, Bulthuis BA, Feitz S, Krab K, Kraayenhof R. 1989. Fermentation metabolism of the unicellular cyanobacterium Cyanothece PCC 7822. Arch. Microbiol. 152:415-419.
-
(1989)
Arch. Microbiol
, vol.152
, pp. 415-419
-
-
van Oost, J.1
Bulthuis, B.A.2
Feitz, S.3
Krab, K.4
Kraayenhof, R.5
-
14
-
-
0017143451
-
Taxonomic review of the genera Synechocystis Sauv. 1892, Synechococcus Näg. 1849, and Cyanothece gen. nov. (Cyanophy-ceae)
-
Komárek J. 1976. Taxonomic review of the genera Synechocystis Sauv. 1892, Synechococcus Näg. 1849, and Cyanothece gen. nov. (Cyanophy-ceae). Arch. Protistenkd. 118:119-179.
-
(1976)
Arch. Protistenkd
, vol.118
, pp. 119-179
-
-
Komárek, J.1
-
15
-
-
0027471228
-
Unicellular, aerobic nitrogen-fixing cyanobacteria of the genus Cyanothece
-
Reddy KJ, Haskell JB, Sherman DM, Sherman LA. 1993. Unicellular, aerobic nitrogen-fixing cyanobacteria of the genus Cyanothece. J. Bacte-riol. 175:1284-1292.
-
(1993)
J. Bacte-riol
, vol.175
, pp. 1284-1292
-
-
Reddy, K.J.1
Haskell, J.B.2
Sherman, D.M.3
Sherman, L.A.4
-
16
-
-
0031960238
-
Cytomorphological characters supporting the taxonomic validity of Cyanothece (Cyanoprokaryota)
-
Komárek J, Cepák V. 1998. Cytomorphological characters supporting the taxonomic validity of Cyanothece (Cyanoprokaryota). Plant Syst. Evol. 210:25-39.
-
(1998)
Plant Syst. Evol
, vol.210
, pp. 25-39
-
-
Komárek, J.1
Cepák, V.2
-
17
-
-
0033975121
-
Unusual ultrastructural features in three strains of Cyanothece (cyanobacteria)
-
Porta D, Rippka R, Hernández-Mariné M. 2000. Unusual ultrastructural features in three strains of Cyanothece (cyanobacteria). Arch. Microbiol. 173:154-163.
-
(2000)
Arch. Microbiol
, vol.173
, pp. 154-163
-
-
Porta, D.1
Rippka, R.2
Hernández-Mariné, M.3
-
18
-
-
0001217708
-
Circadian rhythm of the pro-karyote Synechococcus sp. RF-1
-
Huang T, Tu J, Chow T, Chen T. 1989. Circadian rhythm of the pro-karyote Synechococcus sp. RF-1. Plant Physiol. 92:531-533.
-
(1989)
Plant Physiol
, vol.92
, pp. 531-533
-
-
Huang, T.1
Tu, J.2
Chow, T.3
Chen, T.4
-
19
-
-
0033002355
-
Assessment of the genetic diversity ofhalotolerant coccoid cyanobacteria using amplified 16S rDNA restriction analysis
-
Margheri MC, Bosco M, Giovannetti L, Ventura S. 1999. Assessment of the genetic diversity ofhalotolerant coccoid cyanobacteria using amplified 16S rDNA restriction analysis. FEMS Microbiol. Lett. 173:9-16.
-
(1999)
FEMS Microbiol. Lett
, vol.173
, pp. 9-16
-
-
Margheri, M.C.1
Bosco, M.2
Giovannetti, L.3
Ventura, S.4
-
20
-
-
77955503057
-
Better living through Cyanothece-unicellular diazotrophic cyanobacteria with highly versatile metabolic systems
-
Sherman LS, Min H, Toepel J, Pakrasi HB. 2010. Better living through Cyanothece-unicellular diazotrophic cyanobacteria with highly versatile metabolic systems. Adv. Exp. Med. Biol. 675:275-290.
-
(2010)
Adv. Exp. Med. Biol
, vol.675
, pp. 275-290
-
-
Sherman, L.S.1
Min, H.2
Toepel, J.3
Pakrasi, H.B.4
-
21
-
-
54449093397
-
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
-
Welsh EA, et al. 2008. The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle. Proc. Natl. Acad. Sci. U. S. A. 105:15094-15099.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A
, vol.105
, pp. 15094-15099
-
-
Welsh, E.A.1
-
22
-
-
43149121113
-
Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes
-
Stöckel J, et al. 2008. Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes. Proc. Natl. Acad. Sci. U. S. A. 105:6156-6161.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A
, vol.105
, pp. 6156-6161
-
-
Stöckel, J.1
-
23
-
-
39549113219
-
The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution
-
Kneip C, Voss C, Lockhart PJ, Maier UG. 2008. The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution. BMC Evol. Biol. 8:30.
-
(2008)
BMC Evol. Biol
, vol.8
, pp. 30
-
-
Kneip, C.1
Voss, C.2
Lockhart, P.J.3
Maier, U.G.4
-
24
-
-
56449107383
-
2-fixing cyanobacteria lack oxygenic photosystem II
-
Zehr JP, et al. 2008. Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II. Science 322:1110-1112.
-
(2008)
Science
, vol.322
, pp. 1110-1112
-
-
Zehr, J.P.1
-
25
-
-
78651475398
-
High rates of photobiological H2 production by a cyanobacterium under aerobic conditions
-
Bandyopadhyay A, Stockel J, Min H, Sherman LA, Pakrasi HB. 2010. High rates of photobiological H2 production by a cyanobacterium under aerobic conditions. Nat. Commun. 1:139.
-
(2010)
Nat. Commun
, vol.1
, pp. 139
-
-
Bandyopadhyay, A.1
Stockel, J.2
Min, H.3
Sherman, L.A.4
Pakrasi, H.B.5
-
26
-
-
77955352382
-
Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light
-
Feng X, et al. 2010. Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light. Microbiology 156: 2566-2574.
-
(2010)
Microbiology
, vol.156
, pp. 2566-2574
-
-
Feng, X.1
-
27
-
-
40849094319
-
Integrating Markov clustering and molecular phylogenetics to reconstruct the cyanobacterial species tree from conserved protein families
-
Swingley WD, Blankenship RE, Raymond J. 2008. Integrating Markov clustering and molecular phylogenetics to reconstruct the cyanobacterial species tree from conserved protein families. Mol. Biol. Evol. 25:643-654.
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 643-654
-
-
Swingley, W.D.1
Blankenship, R.E.2
Raymond, J.3
-
28
-
-
0031812609
-
CyanoBase, awww database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803
-
Nakamura Y, Kaneko T, Hirosawa M, Miyajima N, Tabata S. 1998. CyanoBase, awww database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803. Nucleic Acids Res. 26:63-67.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 63-67
-
-
Nakamura, Y.1
Kaneko, T.2
Hirosawa, M.3
Miyajima, N.4
Tabata, S.5
-
29
-
-
33748360105
-
The cyanobacterial genome core and the origin of photosynthesis
-
Mulkidjanian AY, et al. 2006. The cyanobacterial genome core and the origin of photosynthesis. Proc. Natl. Acad. Sci. U. S. A. 103:13126-13131.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A
, vol.103
, pp. 13126-13131
-
-
Mulkidjanian, A.Y.1
-
30
-
-
0028324046
-
Oscillating behavior ofcarbohydrate granule formation and dinitrogenfixationinthe cyanobacterium Cyanothece sp. strain ATCC 51142
-
Schneegurt MA, Sherman DM, Nayar S, Sherman LA. 1994. Oscillating behavior ofcarbohydrate granule formation and dinitrogenfixationinthe cyanobacterium Cyanothece sp. strain ATCC 51142. J. Bacteriol. 176: 1586-1597.
-
(1994)
J. Bacteriol
, vol.176
, pp. 1586-1597
-
-
Schneegurt, M.A.1
Sherman, D.M.2
Nayar, S.3
Sherman, L.A.4
-
31
-
-
78650098778
-
Global proteomics reveal an atypical strategy for carbon/nitrogen assimilation by a cyanobacterium under diverse environmental perturbations
-
Wegener KM, et al. 2010. Global proteomics reveal an atypical strategy for carbon/nitrogen assimilation by a cyanobacterium under diverse environmental perturbations. Mol. Cell. Proteomics 9:2678-2689.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2678-2689
-
-
Wegener, K.M.1
-
32
-
-
77950517828
-
Substrate binding and catalysis in carbamate kinase ascertained by crystallographic and site-directed mutagenesis studies: Movements and significance of a unique globular subdomain of this key enzyme for fermentative ATP production in bacteria
-
Ramón-Maiques S, et al. 2010. Substrate binding and catalysis in carbamate kinase ascertained by crystallographic and site-directed mutagenesis studies: movements and significance of a unique globular subdomain of this key enzyme for fermentative ATP production in bacteria. J. Mol. Biol. 397:1261-1275.
-
(2010)
J. Mol. Biol
, vol.397
, pp. 1261-1275
-
-
Ramón-Maiques, S.1
-
33
-
-
3042815976
-
Two C-P lyase operons in Pseudomonas stutzeri and their roles in the oxidation of phosphonates, phosphite, and hypophosphite
-
White AK, Metcalf WW. 2004. Two C-P lyase operons in Pseudomonas stutzeri and their roles in the oxidation of phosphonates, phosphite, and hypophosphite. J. Bacteriol. 186:4730-4739.
-
(2004)
J. Bacteriol
, vol.186
, pp. 4730-4739
-
-
White, A.K.1
Metcalf, W.W.2
-
35
-
-
77955118014
-
Microbial biosynthesis of alkanes
-
Schirmer A, Rude MA, Li X, Popova E, del Cardayre SB. 2010. Microbial biosynthesis of alkanes. Science 329:559-562.
-
(2010)
Science
, vol.329
, pp. 559-562
-
-
Schirmer, A.1
Rude, M.A.2
Li, X.3
Popova, E.4
del Cardayre, S.B.5
-
36
-
-
44349119272
-
Differential transcriptional analysis of the cyanobacterium Cyanothece sp. strain ATCC 51142 during light-dark and continuous-light growth
-
Toepel J, Welsh E, Summerfield TC, Pakrasi HB, Sherman LA. 2008. Differential transcriptional analysis of the cyanobacterium Cyanothece sp. strain ATCC 51142 during light-dark and continuous-light growth. J. Bacteriol. 190:3904-3913.
-
(2008)
J. Bacteriol
, vol.190
, pp. 3904-3913
-
-
Toepel, J.1
Welsh, E.2
Summerfield, T.C.3
Pakrasi, H.B.4
Sherman, L.A.5
-
37
-
-
67649117757
-
Effect of continuous light on diurnal rhythms in Cyanothece sp. ATCC 51142
-
Elvitigala T, Stöckel J, Ghosh BK, Pakrasi HB. 2009. Effect of continuous light on diurnal rhythms in Cyanothece sp. ATCC 51142. BMC Genomics 10:226.
-
(2009)
BMC Genomics
, vol.10
, pp. 226
-
-
Elvitigala, T.1
Stöckel, J.2
Ghosh, B.K.3
Pakrasi, H.B.4
-
38
-
-
79959659081
-
Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits
-
Larsson J, Nylander JA, Bergman B. 2011. Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits. BMC Evol. Biol. 11:187.
-
(2011)
BMC Evol. Biol
, vol.11
, pp. 187
-
-
Larsson, J.1
Nylander, J.A.2
Bergman, B.3
-
39
-
-
0034786236
-
Significance of the V-type ATPase for the adaptation to stressful growth conditions and its regulation on the molecular and biochemical level
-
Dietz KJ, et al. 2001. Significance of the V-type ATPase for the adaptation to stressful growth conditions and its regulation on the molecular and biochemical level. J. Exp. Bot. 52:1969-1980.
-
(2001)
J. Exp. Bot
, vol.52
, pp. 1969-1980
-
-
Dietz, K.J.1
-
40
-
-
33644935227
-
The V-type H+ ATPase: Molecular structure and function, physiological roles and regulation
-
Beyenbach KW, Wieczorek H. 2006. The V-type H+ ATPase: molecular structure and function, physiological roles and regulation. J. Exp. Biol. 209:577-589.
-
(2006)
J. Exp. Biol
, vol.209
, pp. 577-589
-
-
Beyenbach, K.W.1
Wieczorek, H.2
-
41
-
-
0035208660
-
Re-examining the role of the glyoxylate cycle in oilseeds
-
Eastmond PJ, Graham IA. 2001. Re-examining the role of the glyoxylate cycle in oilseeds. Trends Plant Sci. 6:72-78.
-
(2001)
Trends Plant Sci
, vol.6
, pp. 72-78
-
-
Eastmond, P.J.1
Graham, I.A.2
-
42
-
-
77949504625
-
The smallest known genomes of multicellular and toxic cyanobacteria: Comparison, minimal gene sets for linked traits and the evolutionary implications
-
Stucken K, et al. 2010. The smallest known genomes of multicellular and toxic cyanobacteria: comparison, minimal gene sets for linked traits and the evolutionary implications. PLoS One 5:e9235.
-
(2010)
PLoS One
, vol.5
-
-
Stucken, K.1
-
43
-
-
77952299957
-
Prodigal: Prokaryotic gene recognition and translation initiation site identification
-
Hyatt D, et al. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinform. 11:119.
-
(2010)
BMC Bioinform
, vol.11
, pp. 119
-
-
Hyatt, D.1
-
44
-
-
77953023066
-
GenePRIMP: A gene prediction improvement pipeline for prokaryotic genomes
-
Pati A, et al. 2010. GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat. Methods 7:455-457.
-
(2010)
Nat. Methods
, vol.7
, pp. 455-457
-
-
Pati, A.1
-
45
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
46
-
-
34250665888
-
RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
-
Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
-
47
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. 2003. Rfam: an RNA family database. Nucleic Acids Res. 31:439-441.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
48
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305:567-580.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
50
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
51
-
-
0035878724
-
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
-
Schäffer AA, et al. 2001. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res. 29:2994-3005.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2994-3005
-
-
Schäffer, A.A.1
-
52
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinform. 9:286-298.
-
(2008)
Brief. Bioinform
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
53
-
-
71749099862
-
PhyloXML: XML for evolutionary biology and comparative genomics
-
Han MV, Zmasek CM. 2009. phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinform. 10:356.
-
(2009)
BMC Bioinform
, vol.10
, pp. 356
-
-
Han, M.V.1
Zmasek, C.M.2
-
54
-
-
77956193448
-
ProgressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement
-
Darling AE, Mau B, Perna NT. 2010. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147.
-
(2010)
PLoS One
, vol.5
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
|