Interaction of a goose-type lysozyme with chitin oligosaccharides as determined by NMR spectroscopy

Journal of Biochemistry

Volumn 150, Issue 5, 2011, Pages 569-577

  Shinya, Shoko ^a   Ohnuma, Takayuki ^a   Kawamura, Shunsuke ^b   Torikata, Takao ^b   Nishimura, Shigenori ^c   Katoh, Etsuko ^d   Fukamizo, Tamo ^a  

^a KINKI UNIVERSITY   (Japan)

^b TOKAI UNIVERSITY   (Japan)

^c Osaka Prefecture University   (Japan)

^d NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

goose type lysozyme; ITC; NMR; oligosaccharide; protein carbohydrate interaction

Indexed keywords

EGG WHITE; GOOSE TYPE LYSOZYME; LYSOZYME; N ACETYLGLUCOSAMINE; OSTRICH EGG WHITE; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; ENTHALPY; ENZYME ACTIVE SITE; ENZYME SUBSTRATE; HETERONUCLEAR SINGLE QUANTUM COHERENCE; ISOTHERMAL TITRATION CALORIMETRY; ISOTOPE LABELING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PICHIA PASTORIS; PROTEIN BINDING; PROTEIN CARBOHYDRATE INTERACTION; THERMODYNAMICS; WILD TYPE; X RAY CRYSTALLOGRAPHY;

ANIMALS; CHITIN; MAGNETIC RESONANCE SPECTROSCOPY; MURAMIDASE; OLIGOSACCHARIDES; PROTEIN BINDING; STRUTHIONIFORMES;

ANSER; PICHIA PASTORIS; STRUTHIONIFORMES;

EID: 80455156038     PISSN: 0021924X     EISSN: 17562651     Source Type: Journal    
DOI: 10.1093/jb/mvr101     Document Type: Article

References (29)

1. Jollés, P. and Jollés, J. (1984) What's new in lysozyme research? Always a model system, today as yesterday. Mol. Cell Biochem. 63, 165-189
2. Chipman, D.M., Pollock, J.J., and Sharon, N. (1968) Lysozyme-catalyzed hydrolysis and transglycosylation reactions of bacterial cell wall oligosaccharides. J. Biol. Chem. 243, 487-496
3. Banerjee, S.K., Holler, E., Hess, G.P., and Rupley, J.A. (1975) Reaction of N-acetylglucosamine oligosaccharides with lysozyme. Temperature, pH, and solvent deuterium isotope effects; equilbrium, steady state, and pre-steady state measurements. J. Biol. Chem. 250, 4355-4367
4. Masaki, A., Fukamizo, T., Otakara, A., Torikata, T., Hayashi, K., and Imoto, T. (1981) Lysozyme-catalyzed reaction of chitooligosaccharides. J. Biochem. 90, 527-533
5. Fukamizo, T., Torikata, T., Kuhara, S., and Hayashi, K. (1982) Human lysozyme-catalyzed reaction of chitooligosaccharides. J. Biochem. 92, 709-716
6. Fukamizo, T., Torikata, T., Nagayama, T., Minematsu, T., and Hayashi, K. (1983) Enzymatic activity of avian egg-white lysozymes. J. Biochem. 94, 115-122
7. Mirelman, D., Kleppe, G., and Jensen, H.B. (1975) Studies on the specificity of action of bacteriophage T4
8. Jensen, H.B., Kleppe, G., Schindler, M., and Mirelman, D. (1976) The specificity requirements of bacteriophage T4 lysozyme. Eur. J. Biochem. 66, 319-325
9. Arnheim, N., Inouye, M., Law, L., and Laudin, A. (1973) Chemical studies on the enzymatic specificity of goose egg white lysozyme. J. Biol. Chem. 248, 233-236
10. Kuroki, R., Morimoto, K., and Matthews, B.W. (1998) Converting T4 phage lysozyme into a transglycosidase. Ann. NY Acad. Sci. 864, 362-365
11. Fukamizo, T., Minematsu, T., Yanase, Y., Hayashi, K., and Goto, S. (1986) Substrate size dependence of lysozyme-catalyzed reaction. Arch. Biochem. Biophys. 250, 312-321
12. Henrissat, B. and Bairoch, A. (1993) New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 293, 781-788
13. Monzingo, A.F., Marcotte, E.M., Hart, P.J., and Robertus, J.D. (1996) Chitinases, chitosanases, and lysozymes can be divided into procaryotic and eucaryotic families sharing a conserved core. Nat. Struct. Biol. 3, 133-140
14. Weaver, L.H., Grütter, M.G., Remington, S.J., Gray, T.M., Isaacs, N.W., and Matthews, B.W. (1984-1985) Comparison of goose-type, chicken-type, and phage-type lysozymes illustrates the changes that occur in both amino acid sequence and three-dimensional structure during evolution. J. Mol. Evol. 21, 97-111
15. Weaver, L.H., Grütter, M.G., and Matthews, B.W. (1995) The refined structures of goose lysozyme and its complex with a bound trisaccharide show that the "goose-type" lysozymes lack a catalytic aspartate residue. J. Mol. Biol. 245, 54-68
16. Helland, R., Larsen, R.L., Finstad, S., Kyomuhendo, P., and Larsen, A.N. (2009) Crystal structures of g-type lysozyme from Atlantic cod shed new light on substrate binding and the catalytic mechanism. Cell Mol. Life Sci. 66, 2585-2598
17. Honda, Y. and Fukamizo, T. (1998) Substrate binding subsites of chitinase from barley seeds and lysozyme from goose egg white. Biochim. Biophys. Acta. 1388, 53-65
18. Kawamura, S., Fukamizo, T., Araki, T., and Torikata, T. (2003) Expression of a synthetic gene coding for ostrich egg-white lysozyme in Pichia pastoris and its enzymatic activity. J. Biochem. 133, 123-131
19. Schoentgen, F., Jolle's, J., and Jolle's, P. (1982) Complete amino acid sequence of ostrich (Struthio camelus) egg-white lysozyme, a goose type lysozyme. Eur. J. Biochem. 123, 489-497
20. Kawamura, S., Ohno, K., Ohkuma, M., Chijiiwa, Y., and Torikata, T. (2006) Experimental verification of the crucial roles of Glu73 in the catalytic activity and structural stability of goose-type lysozyme. J. Biochem. 140, 75-85
21. Kawamura, S., Ohkuma, M., Chijiiwa, Y., Kohno, D., Nakagawa, H., Hirakawa, H., Kuhara, S., and Torikata, T. (2008) Role of disulfide bonds in goose-type lysozyme. FEBS J. 275, 2818-2830
22. Wishart, D.S., Bigam, C.G., Holm, A., Hodges, R.S., and Sykes, B.D. (1995) 1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects. J. Biomol. NMR 5, 67-81
23. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biol. NMR. 6, 277-293
24. Goddard, T.D. and Kneller D.G. SPARKY 3, University of California, San Francisco 25. Wiseman, T., Williston, S., Brandts, J.F., and Lin, L.-N. (1989) Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal. Biochem. 179, 131-137
25. Wiseman, T., Williston, S., Brandts, J.F., and Lin, L.-N. (1989) Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal. Biochem. 179, 131-137
26. Jelesarov, I. and Bosshard, H.R. (1999) Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition. J. Mol. Recognit. 12, 3-18
27. Pierce, M.M., Raman, C.S., and Nall, B.T. (1999) Isothermal titration calorimetry of protein-protein interactions. Methods. 19, 213-221
28. Imoto, T., Johnson, L.N., North, A.C.T., Phillips, D.C., and Rupley, J.A. (1972) Vertebrate lysozyme, in The Enzymes Vol. 7, 3rd edn (Boyer, P.D., ed.), pp. 665-868, Academic Press, New York 29. Hirakawa, H., Ochi, A., Kawahara, Y., Kawamura, S., Torikata, T., and Kuhara, S. (2008) Catalytic reaction mechanism of goose egg-white lysozyme by molecular modeling of enzyme-substrate complex. J. Biochem. 144, 753-761
29. Hirakawa, H., Ochi, A., Kawahara, Y., Kawamura, S., Torikata, T., and Kuhara, S. (2008) Catalytic reaction mechanism of goose egg-white lysozyme by molecular modeling of enzyme-substrate complex. J. Biochem. 144, 753-761