Citreicella aestuarii sp. nov., isolated from a tidal flat

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 11, 2011, Pages 2595-2599

  Park, Moon Su ^a   Chung, Bok Sil ^a   Lee, Hyo Jung ^a   Jin, Hyun Mi ^a   Lee, Sang Suk ^b   Oh, Young Kyoon ^c   Jeon, Che Ok ^a  

^a Chung Ang University   (South Korea)

^b Sunchon National University   (South Korea)

^c National Institute of Animal Science   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RNA 16S;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATION; CITREICELLA AESTUARII; DNA BASE COMPOSITION; FLAGELLUM; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEASHORE; SOUTH KOREA; SPECIES IDENTIFICATION; TAXONOMY; TYPE STRAIN;

BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; REPUBLIC OF KOREA; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEAWATER;

ALPHAPROTEOBACTERIA; CITREICELLA; NEGIBACTERIA;

EID: 80455143339     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.028332-0     Document Type: Article

References (24)

1. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B.-K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
2. Chung, B. S., Ryu, S. H., Park, M., Jeon, Y., Chung, Y. R. & Jeon, C. O. (2007). Hydrogenophaga caeni sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 57, 1126-1130.
3. Dai, X., Wang, B. J., Yang, Q. X., Jiao, N. Z. & Liu, S. J. (2007). Yangia pacifica gen. nov., sp. nov., a novel member of the Roseobacter clade from coastal sediment of the East China Sea. Int J Syst Evol Microbiol 56, 529-533.
4. Felsenstein, J. (2002). PHYLIP (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
5. Gomori, G. (1955). Preparation of buffers for use in enzyme studies. Methods Enzymol 1, 138-146.
6. Jeon, C. O., Park, W., Ghiorse, W. C. & Madsen, E. L. (2004). Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. Int J Syst Evol Microbiol 54, 93-97.
7. Jin, H. M., Lee, H. J., Kim, J. M., Park, M. S., Lee, K. & Jeon, C. O. (2011). Litorimicrobium taeanense gen. nov., sp. nov., isolated from a sandy beach. Int J Syst Evol Microbiol 61, 1392-1396.
8. Jung, J. Y., Kim, J. M., Jin, H. M., Kim, S. Y., Park, W. & Jeon, C. O. (2011). Litorimonas taeanensis gen. nov., sp. nov., isolated from a sandy beach. Int J Syst Evol Microbiol 61, 1534-1538.
9. Kim, J. M., Le, N. T., Chung, B. S., Park, J. H., Bae, J.-W., Madsen, E. L. & Jeon, C. O. (2008). Influence of soil components on the biodegradation of benzene, toluene, ethylbenzene, and o-, m-, and p-xylenes by the newly isolated bacterium Pseudoxanthomonas spadix BD-a59. Appl Environ Microbiol 74, 7313-7320.
10. Kim, J. M., Lee, S. H., Jung, J. Y. & Jeon, C. O. (2010a). Marinobacterium lutimaris sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol 60, 1828-1831.
11. Kim, J. M., Jung, J. Y., Chae, H. B., Park, W. & Jeon, C. O. (2010b). Hwanghaeicola aestuarii gen. nov., sp. nov., a moderately halophilic bacterium isolated from a tidal flat of the Yellow Sea. Int J Syst Evol Microbiol 60, 2877-2881.
12. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
13. Lai, Q., Qiao, N., Wu, C., Sun, F., Yuan, J. & Shao, Z. (2010). Stappia indica sp. nov., isolated from deep seawater of the Indian Ocean. Int J Syst Evol Microbiol 60, 733-736.
14. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
15. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
16. Lee, S. H., Shim, J. K., Kim, J. M., Choi, H.-K. & Jeon, C. O. (2011). Henriciella litoralis sp. nov., isolated from a tidal-flat of the Yellow Sea, and transfer of Maribaculum marinum Lai et al. 2009 to the genus Henriciella as Henriciella aquimarina nom. nov. and emended description of the genus Henriciella. Int J Syst Evol Microbiol 61, 722-727.
17. Lu, S., Park, M., Ro, H.-S., Lee, D. S., Park, W. & Jeon, C. O. (2006). Analysis of microbial communities using culture-dependent and culture-independent approaches in an anaerobic/aerobic SBR reactor. J Microbiol 44, 155-161.
18. Rosselló-Mora, R. & Amann, R. (2001). The species concept for prokaryotes. FEMS Microbiol Rev 25, 39-67.
19. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt. Washington, DC: American Society for Microbiology.
20. Sorokin, D. Y., Tourova, T. P. & Muyzer, G. (2005). Citreicella thiooxidans gen. nov., sp. nov., a novel lithoheterotrophic sulfuroxidizing bacterium from the Black Sea. Syst Appl Microbiol 28, 679- 687.
21. Sorokin, D. Y., Tourova, T. P. & Muyzer, G. (2006). Citreicella thiooxidans gen. nov., sp. nov. In List of New Names and New Combinations Previously Effectively, but not Validly, Published, Validation List no. 107. Int J Syst Evol Microbiol 56, 1-6.
22. Stamatakis, A., Ott, M. & Ludwig, T. (2005). RAxML-OMP: an efficient program for phylogenetic inference on SMPs. In Proceedings of 8th International Conference on Parallel Computing Technologies (PaCT2005). Lecture Notes in Computer Science, 3506, 288-302, Springer Verlag.
23. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
24. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.