The emergence of complexity and restricted pleiotropy in adapting networks

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Le Nagard, Hervé ^a,b,c   Chao, Lin ^d   Tenaillon, Olivier ^a,b  

^a INSERM   (France)

^b UNIVERSITÉ PARIS DESCARTES   (France)

^c BICHAT HOSPITAL   (France)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE RADIATION; EMERGENCE; NATURAL SELECTION; PHENOTYPIC PLASTICITY; PLEIOTROPY;

ADAPTATION; ANIMAL; ARTICLE; BIOLOGICAL MODEL; COMPUTER SIMULATION; ENVIRONMENT; EVOLUTION; HUMAN; METABOLISM; MUTATION; NERVE CELL NETWORK; PHENOTYPE; PHYSIOLOGY; PLEIOTROPY;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; BIOLOGICAL EVOLUTION; COMPUTER SIMULATION; ENVIRONMENT; GENETIC PLEIOTROPY; HUMANS; MODELS, BIOLOGICAL; MODELS, GENETIC; MUTATION; NERVE NET; PHENOTYPE;

EID: 80355125236     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-326     Document Type: Article

References (42)

1. The Origin of Species by Means of Natural Selection. Darwin C, London 1859
2. Criteria for conceptual and operational notions of complexity. Chu D, Artificial Life 2008 14 3 313 323 10.1162/artl.2008.14.3.14306 18489246
3. Evolution of complexity. Gershenson C, Lenaerts T, Artificial Life 2008 14 3 241 243 10.1162/artl.2008.14.3.14300 18489253
4. Molecular biology and evolution. Can genes explain biological complexity? Szathmary E, Jordan F, Pal C, Science 2001 292 5520 1315 1316 10.1126/science.1060852 11360989 (Pubitemid 32476208)
5. Chance and necessity: the evolution of morphological complexity and diversity. Carroll SB, Nature 2001 409 6823 1102 1109 10.1038/35059227 11234024 (Pubitemid 32204066)
6. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Prochnik SE, Umen J, Nedelcu AM, Hallmann A, Miller SM, Nishii I, Ferris P, Kuo A, Mitros T, Fritz-Laylin LK, et al. Science 2010 329 5988 223 226 10.1126/science.1188800 20616280
7. Adaptation and the cost of complexity. Orr HA, Evolution 2000 54 1 13 20 10937178 (Pubitemid 30186263)
8. Understanding the Evolution and Stability of the G-Matrix. Arnold SJ, Burger R, Hohenlohe PA, Ajie BC, Jones AG, Evolution 2008 62 10 2451 2461 10.1111/j.1558-5646.2008.00472.x 18973631
9. Complexity and diversity. Doebeli M, Ispolatov I, Science 2010 328 5977 494 497 10.1126/science.1187468 20413499
10. Evolution of biological complexity. Adami C, Ofria C, Collier TC, Proc Natl Acad Sci USA 2000 97 9 4463 4468 10.1073/pnas.97.9.4463 10781045 (Pubitemid 30238580)
11. A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species. Martin G, Lenormand T, Evolution Int J Org Evolution 2006 60 5 893 907 (Pubitemid 44804491)
12. Quantifying organismal complexity using a population genetic approach. Tenaillon O, Silander OK, Uzan JP, Chao L, PLoS ONE 2007 2 217 10.1371/journal.pone.0000217 17299597
13. Fisher RA, The genetical theory of natural selection Oxford: Oxford University Press 1930
14. The population genetics of adaptation: The distribution of factors fixed during adaptive evolution. Orr HA, Evolution 1998 52 4 935 949 10.2307/2411226 (Pubitemid 28417879)
15. Compensatory nearly neutral mutations: selection without adaptation. Hartl DL, Taubes CH, J Theor Biol 1996 182 3 303 309 10.1006/jtbi.1996.0168 8944162 (Pubitemid 26377417)
16. Compensating for our load of mutations: freezing the meltdown of small populations. Poon A, Otto SP, Evolution Int J Org Evolution 2000 54 5 1467 1479
17. Distributions of epistasis in microbes fit predictions from a fitness landscape model. Martin G, Elena SF, Lenormand T, Nature Genetics 2007 39 4 555 560 10.1038/ng1998 17369829 (Pubitemid 46514778)
18. Fisher's model and the genomics of adaptation: restricted pleiotropy, heterogenous mutation, and parallel evolution. Chevin LM, Martin G, Lenormand T, Evolution 2010 64 11 3213 3231 10.1111/j.1558-5646.2010.01058.x 20662921
19. Evolution by small steps and rugged landscapes in the RNA virus phi6. Burch CL, Chao L, Genetics 1999 151 3 921 927 10049911 (Pubitemid 29118104)
20. Understanding the evolutionary fate of finite populations: the dynamics of mutational effects. Silander OK, Tenaillon O, Chao L, PLoS Biol 2007 5 4 94 10.1371/journal.pbio.0050094 17407380 (Pubitemid 46631867)
21. The distribution of beneficial and fixed mutation fitness effects close to an optimum. Martin G, Lenormand T, Genetics 2008 179 2 907 916 10.1534/genetics.108.087122 18505866
22. Modularity and the cost of complexity. Welch JJ, Waxman D, Evolution Int J Org Evolution 2003 57 8 1723 1734 (Pubitemid 37096390)
23. Towards a theory of evolutionary adaptation. Hartl DL, Taubes CH, Genetica 1998 102-103 1-6 525 533 9720296 (Pubitemid 28371738)
24. The evolution of epistasis and its links with genetic robustness, complexity and drift in a phenotypic model of adaptation. Gros PA, Le Nagard H, Tenaillon O, Genetics 2009 182 1 277 293 10.1534/genetics.108.099127 19279327
25. Selection for chaperone-like mediated genetic robustness at low mutation rate: impact of drift, epistasis and complexity. Gros PA, Tenaillon O, Genetics 2009 182 2 555 564 10.1534/genetics.108.099366 19307609
26. Genome complexity, robustness and genetic interactions in digital organisms [see comments]. Lenski RE, Ofria C, Collier TC, Adami C, Nature 1999 400 6745 661 664 10.1038/23245 10458160 (Pubitemid 29382568)
27. The evolutionary origin of complex features. Lenski RE, Ofria C, Pennock RT, Adami C, Nature 2003 423 6936 139 144 10.1038/nature01568 12736677 (Pubitemid 36569531)
28. Three approaches to the quantitative definition of information. Kolmogorov A, Problems Inform Transmission 1965 1 1 1 7
29. Evolutionarily singular strategies and the adaptive growth and branching of the evolutionary tree. Geritz SAH, Kisdi E, Meszéna G, Metz JAJ, Evol Ecol 1998 12 35 57 (Pubitemid 28139607)
30. The application of statistical physics to evolutionary biology. Sella G, Hirsh AE, Proc Natl Acad Sci USA 2005 102 27 9541 9546 10.1073/pnas.0501865102 15980155 (Pubitemid 40981717)
31. Universally sloppy parameter sensitivities in systems biology models. Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, Sethna JP, Plos Computational Biology 2007 3 10 1871 1878 17922568 (Pubitemid 350043403)
32. Measuring Biological Complexity in Digital Organisms. Huang W, Ofria C, Torng E, Ninth International Conference on Artificial Life 2004 9 315 321
33. Modularity and community detection in bipartite networks. Barber MJ, Phys Rev E Stat Nonlin Soft Matter Phys 2007 76 6 Pt 2 066102 18233893
34. Exaptation-a Missing Term in the Science of Form. Gould SJ, Vrba ES, Paleobiology 1982 8 1 4 15 (Pubitemid 13281606)
35. Complexity, pleiotropy, and the fitness effect of mutations. Lourenco J, Galtier N, Glemin S, Evolution 2011 65 6 1559 1571 10.1111/j.1558-5646.2011. 01237.x 21644948
36. One hundred years of pleiotropy: a retrospective. Stearns FW, Genetics 2010 186 3 767 773 10.1534/genetics.110.122549 21062962
37. The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms. Wagner GP, Zhang J, Nat Rev Genet 2011 12 3 204 213 21331091
38. Pleiotropic scaling of gene effects and the 'cost of complexity'. Wagner GP, Kenney-Hunt JP, Pavlicev M, Peck JR, Waxman D, Cheverud JM, Nature 2008 452 7186 470 472 10.1038/nature06756 18368117 (Pubitemid 351450843)
39. Genomic patterns of pleiotropy and the evolution of complexity. Wang Z, Liao BY, Zhang J, Proc Natl Acad Sci USA 2010 107 42 18034 18039 10.1073/pnas.1004666107 20876104
40. Second-order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation. Tenaillon O, Taddei F, Radmian M, Matic I, Res Microbiol 2001 152 1 11 16 10.1016/S0923-2508(00)01163-3 11281320 (Pubitemid 32168113)
41. Ohno S, Evolution by gene duplication Berlin: Springer-Verlag 1970
42. The origins of genome complexity. Lynch M, Conery JS, Science 2003 302 5649 1401 1404 10.1126/science.1089370 14631042 (Pubitemid 37452183)