-
1
-
-
77954860413
-
Genetic diversity assessments in the century of genome science
-
Yahara T, Donoghue M, Zardoya R, Faith DP, Cracraft J, (2010) Genetic diversity assessments in the century of genome science. Curr Opin Environ Sustainability 2: 43-49.
-
(2010)
Curr Opin Environ Sustainability
, vol.2
, pp. 43-49
-
-
Yahara, T.1
Donoghue, M.2
Zardoya, R.3
Faith, D.P.4
Cracraft, J.5
-
2
-
-
80051745904
-
Evolution of Plant Pathogenesis in Pseudomonas syringae: A Genomics Perspective
-
O'Brien HE, Thakur S, Guttman DS, (2011) Evolution of Plant Pathogenesis in Pseudomonas syringae: A Genomics Perspective. Annu Rev Phytopathol 49: 269-289.
-
(2011)
Annu Rev Phytopathol
, vol.49
, pp. 269-289
-
-
O'Brien, H.E.1
Thakur, S.2
Guttman, D.S.3
-
3
-
-
70349866672
-
Genome project standards in a new era of sequencing
-
Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, et al. (2009) Genome project standards in a new era of sequencing. Science 326: 236-237.
-
(2009)
Science
, vol.326
, pp. 236-237
-
-
Chain, P.S.1
Grafham, D.V.2
Fulton, R.S.3
Fitzgerald, M.G.4
Hostetler, J.5
-
4
-
-
59949090259
-
De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae
-
Reinhardt JA, Baltrus DA, Nishimura MT, Jeck WR, Jones CD, et al. (2009) De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. Genome Res 19: 294-305.
-
(2009)
Genome Res
, vol.19
, pp. 294-305
-
-
Reinhardt, J.A.1
Baltrus, D.A.2
Nishimura, M.T.3
Jeck, W.R.4
Jones, C.D.5
-
5
-
-
24944453122
-
Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition
-
Joardar V, Lindeberg M, Jackson RW, Selengut J, Dodson R, et al. (2005) Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J Bacteriol 187: 6488-6498.
-
(2005)
J Bacteriol
, vol.187
, pp. 6488-6498
-
-
Joardar, V.1
Lindeberg, M.2
Jackson, R.W.3
Selengut, J.4
Dodson, R.5
-
6
-
-
58149291658
-
De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads
-
Farrer RA, Kemen E, Jones JDG, Studholme DJ, (2009) De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. FEMS Microbiol Lett 291: 103-111.
-
(2009)
FEMS Microbiol Lett
, vol.291
, pp. 103-111
-
-
Farrer, R.A.1
Kemen, E.2
Jones, J.D.G.3
Studholme, D.J.4
-
7
-
-
79951530130
-
Scaffolding pre-assembled contigs using SSPACE
-
Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W, (2011) Scaffolding pre-assembled contigs using SSPACE. Bioinformatics (Oxford, England) 27: 578-579.
-
(2011)
Bioinformatics (Oxford, England)
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
8
-
-
77956193448
-
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
Darling AE, Mau B, Perna NT, (2010) progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5: e11147.
-
(2010)
PLoS One
, vol.5
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
9
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, et al. (2008) The RAST server: rapid annotations using subsystems technology. BMC Bioinformatics 9: 75.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
-
10
-
-
33644873697
-
The integrated microbial genomes (IMG) system
-
Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, et al. (2006) The integrated microbial genomes (IMG) system. Nucleic Acids Res 34: D344-D348.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Markowitz, V.M.1
Korzeniewski, F.2
Palaniappan, K.3
Szeto, E.4
Werner, G.5
-
11
-
-
0034201441
-
EMBOSS: the European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
13
-
-
58149284564
-
A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000
-
Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, et al. (2009) A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant-Microbe Interact 22: 52-62.
-
(2009)
Mol Plant-Microbe Interact
, vol.22
, pp. 52-62
-
-
Almeida, N.F.1
Yan, S.2
Lindeberg, M.3
Studholme, D.J.4
Schneider, D.J.5
-
14
-
-
77956324972
-
Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum
-
Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, et al. (2010) Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One 5: e10224.
-
(2010)
PLoS One
, vol.5
-
-
Green, S.1
Studholme, D.J.2
Laue, B.E.3
Dorati, F.4
Lovell, H.5
-
15
-
-
79551533113
-
Genome Sequence Analyses of Pseudomonas savastanoi pv. glycinea and Subtractive Hybridization-Based Comparative Genomics with Nine Pseudomonads
-
Qi M, Wang D, Bradley CA, Zhao Y, (2011) Genome Sequence Analyses of Pseudomonas savastanoi pv. glycinea and Subtractive Hybridization-Based Comparative Genomics with Nine Pseudomonads. PLoS One 6: e16451.
-
(2011)
PLoS One
, vol.6
-
-
Qi, M.1
Wang, D.2
Bradley, C.A.3
Zhao, Y.4
-
16
-
-
77957938106
-
Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts
-
Rodríguez-Palenzuela P, Matas IM, Murillo J, López-Solanilla E, Bardaji L, et al. (2010) Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts. Environ Microbiol 12: 1604-1620.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1604-1620
-
-
Rodríguez-Palenzuela, P.1
Matas, I.M.2
Murillo, J.3
López-Solanilla, E.4
Bardaji, L.5
-
17
-
-
70349577932
-
A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudonomas syringae pathovar tabaci 11528
-
Studholme DJ, Gimenez Ibanez S, MacLean D, Dangl JL, Chang JH, et al. (2009) A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudonomas syringae pathovar tabaci 11528. BMC Genomics 10: 395.
-
(2009)
BMC Genomics
, vol.10
, pp. 395
-
-
Studholme, D.J.1
Gimenez Ibanez, S.2
MacLean, D.3
Dangl, J.L.4
Chang, J.H.5
-
18
-
-
67651091927
-
Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis
-
Bakke P, Carney N, Deloache W, Gearing M, Ingvorsen K, et al. (2009) Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis. PLoS One 4: e6291.
-
(2009)
PLoS One
, vol.4
-
-
Bakke, P.1
Carney, N.2
Deloache, W.3
Gearing, M.4
Ingvorsen, K.5
|