메뉴 건너뛰기




Volumn 6, Issue 11, 2011, Pages

Use of low-coverage, large-insert, short-read data for rapid and accurate generation of enhanced-quality draft Pseudomonas genome sequences

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; CONTIG MAPPING; CONTROLLED STUDY; GENE DELETION; GENE INSERTION; GENE LIBRARY; GENE SEQUENCE; NONHUMAN; OPEN READING FRAME; PSEUDOMONAS; PSEUDOMONAS PHASEOLICOLA; PSEUDOMONAS SYRINGAE; REPLICON; SINGLE NUCLEOTIDE POLYMORPHISM; BACTERIAL GENOME; GENETICS;

EID: 80355123694     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0027199     Document Type: Article
Times cited : (4)

References (18)
  • 2
    • 80051745904 scopus 로고    scopus 로고
    • Evolution of Plant Pathogenesis in Pseudomonas syringae: A Genomics Perspective
    • O'Brien HE, Thakur S, Guttman DS, (2011) Evolution of Plant Pathogenesis in Pseudomonas syringae: A Genomics Perspective. Annu Rev Phytopathol 49: 269-289.
    • (2011) Annu Rev Phytopathol , vol.49 , pp. 269-289
    • O'Brien, H.E.1    Thakur, S.2    Guttman, D.S.3
  • 4
    • 59949090259 scopus 로고    scopus 로고
    • De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae
    • Reinhardt JA, Baltrus DA, Nishimura MT, Jeck WR, Jones CD, et al. (2009) De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. Genome Res 19: 294-305.
    • (2009) Genome Res , vol.19 , pp. 294-305
    • Reinhardt, J.A.1    Baltrus, D.A.2    Nishimura, M.T.3    Jeck, W.R.4    Jones, C.D.5
  • 5
    • 24944453122 scopus 로고    scopus 로고
    • Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition
    • Joardar V, Lindeberg M, Jackson RW, Selengut J, Dodson R, et al. (2005) Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J Bacteriol 187: 6488-6498.
    • (2005) J Bacteriol , vol.187 , pp. 6488-6498
    • Joardar, V.1    Lindeberg, M.2    Jackson, R.W.3    Selengut, J.4    Dodson, R.5
  • 6
    • 58149291658 scopus 로고    scopus 로고
    • De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads
    • Farrer RA, Kemen E, Jones JDG, Studholme DJ, (2009) De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. FEMS Microbiol Lett 291: 103-111.
    • (2009) FEMS Microbiol Lett , vol.291 , pp. 103-111
    • Farrer, R.A.1    Kemen, E.2    Jones, J.D.G.3    Studholme, D.J.4
  • 8
    • 77956193448 scopus 로고    scopus 로고
    • progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT, (2010) progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5: e11147.
    • (2010) PLoS One , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 11
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 13
    • 58149284564 scopus 로고    scopus 로고
    • A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000
    • Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, et al. (2009) A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant-Microbe Interact 22: 52-62.
    • (2009) Mol Plant-Microbe Interact , vol.22 , pp. 52-62
    • Almeida, N.F.1    Yan, S.2    Lindeberg, M.3    Studholme, D.J.4    Schneider, D.J.5
  • 14
    • 77956324972 scopus 로고    scopus 로고
    • Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum
    • Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, et al. (2010) Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One 5: e10224.
    • (2010) PLoS One , vol.5
    • Green, S.1    Studholme, D.J.2    Laue, B.E.3    Dorati, F.4    Lovell, H.5
  • 15
    • 79551533113 scopus 로고    scopus 로고
    • Genome Sequence Analyses of Pseudomonas savastanoi pv. glycinea and Subtractive Hybridization-Based Comparative Genomics with Nine Pseudomonads
    • Qi M, Wang D, Bradley CA, Zhao Y, (2011) Genome Sequence Analyses of Pseudomonas savastanoi pv. glycinea and Subtractive Hybridization-Based Comparative Genomics with Nine Pseudomonads. PLoS One 6: e16451.
    • (2011) PLoS One , vol.6
    • Qi, M.1    Wang, D.2    Bradley, C.A.3    Zhao, Y.4
  • 16
    • 77957938106 scopus 로고    scopus 로고
    • Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts
    • Rodríguez-Palenzuela P, Matas IM, Murillo J, López-Solanilla E, Bardaji L, et al. (2010) Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts. Environ Microbiol 12: 1604-1620.
    • (2010) Environ Microbiol , vol.12 , pp. 1604-1620
    • Rodríguez-Palenzuela, P.1    Matas, I.M.2    Murillo, J.3    López-Solanilla, E.4    Bardaji, L.5
  • 17
    • 70349577932 scopus 로고    scopus 로고
    • A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudonomas syringae pathovar tabaci 11528
    • Studholme DJ, Gimenez Ibanez S, MacLean D, Dangl JL, Chang JH, et al. (2009) A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudonomas syringae pathovar tabaci 11528. BMC Genomics 10: 395.
    • (2009) BMC Genomics , vol.10 , pp. 395
    • Studholme, D.J.1    Gimenez Ibanez, S.2    MacLean, D.3    Dangl, J.L.4    Chang, J.H.5
  • 18
    • 67651091927 scopus 로고    scopus 로고
    • Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis
    • Bakke P, Carney N, Deloache W, Gearing M, Ingvorsen K, et al. (2009) Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis. PLoS One 4: e6291.
    • (2009) PLoS One , vol.4
    • Bakke, P.1    Carney, N.2    Deloache, W.3    Gearing, M.4    Ingvorsen, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.