-
1
-
-
46149122972
-
Prokaryotic diversity of a Tunisian multipond solar saltern
-
Baati H, Guermazi S, Amdouni R, Gharsallah N, Sghir A, Ammar E (2008) Prokaryotic diversity of a Tunisian multipond solar saltern. Extremophiles 12: 505-518.
-
(2008)
Extremophiles
, vol.12
, pp. 505-518
-
-
Baati, H.1
Guermazi, S.2
Amdouni, R.3
Gharsallah, N.4
Sghir, A.5
Ammar, E.6
-
2
-
-
77956288145
-
Novel prokaryotic diversity in sediments of Tunisian multipond solar saltern
-
Baati H, Guermazi S, Gharsallah N, Sghir A, Ammar E (2010) Novel prokaryotic diversity in sediments of Tunisian multipond solar saltern. Res Microbiol 161: 573-582.
-
(2010)
Res Microbiol
, vol.161
, pp. 573-582
-
-
Baati, H.1
Guermazi, S.2
Gharsallah, N.3
Sghir, A.4
Ammar, E.5
-
4
-
-
77149143533
-
Comparative community genomics in the Dead Sea: an increasingly extreme environment
-
Bodaker I, Sharon I, Suzuki MT, Feingersch R, Shmoish M, Andreishcheva E, Sogin ML, Rosenberg M, Maguire ME, Belkin S, Oren A, Béjà O (2010) Comparative community genomics in the Dead Sea: an increasingly extreme environment. ISME J 4: 399-407.
-
(2010)
ISME J
, vol.4
, pp. 399-407
-
-
Bodaker, I.1
Sharon, I.2
Suzuki, M.T.3
Feingersch, R.4
Shmoish, M.5
Andreishcheva, E.6
Sogin, M.L.7
Rosenberg, M.8
Maguire, M.E.9
Belkin, S.10
Oren, A.11
Béjà, O.12
-
5
-
-
33947602415
-
Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond
-
Briée C, Moreira D, López-García P (2007) Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond. Res Microbiol 158: 213-227.
-
(2007)
Res Microbiol
, vol.158
, pp. 213-227
-
-
Briée, C.1
Moreira, D.2
López-García, P.3
-
6
-
-
42049084820
-
Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen
-
Cadillo-Quiroz H, Yashiro E, Yavitt JB, Zinder SH (2008) Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen. Appl Environ Microbiol 74: 2059-2068.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2059-2068
-
-
Cadillo-Quiroz, H.1
Yashiro, E.2
Yavitt, J.B.3
Zinder, S.H.4
-
7
-
-
33745296397
-
Geochemistry and microbiology of an impounded subterranean acidic water body at Mynydd Parys, Anglesey, Wales
-
Coupland K, Johnson DB (2004) Geochemistry and microbiology of an impounded subterranean acidic water body at Mynydd Parys, Anglesey, Wales. Geobiology 2: 77-86.
-
(2004)
Geobiology
, vol.2
, pp. 77-86
-
-
Coupland, K.1
Johnson, D.B.2
-
8
-
-
0033987390
-
Evidence for microbial Fe(III) reduction in anoxic, mining-impacted lake sediments (Lake Coeur d'Alene, Idaho)
-
Cummings DE, March AW, Bostick B, Spring S, Caccavo F Jr, Fendorf S, Rosenzweig RF (2000) Evidence for microbial Fe(III) reduction in anoxic, mining-impacted lake sediments (Lake Coeur d'Alene, Idaho). Appl Environ Microbiol 66: 154-162.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 154-162
-
-
Cummings, D.E.1
March, A.W.2
Bostick, B.3
Spring, S.4
Caccavo Jr., F.5
Fendorf, S.6
Rosenzweig, R.F.7
-
9
-
-
0025669294
-
Composition of anoxic hypersaline brines in the Tyro and Bannock basins, eastern Mediterranean
-
De Lange GJ, Middelburg JJ, van der Weijen CH, Catalano G, Luther GW, Hydes DJ, Woittiez JRW, Klinkhammer GP (1990) Composition of anoxic hypersaline brines in the Tyro and Bannock basins, eastern Mediterranean. Marine Chemistry 31: 63-88.
-
(1990)
Marine Chemistry
, vol.31
, pp. 63-88
-
-
de Lange, G.J.1
Middelburg, J.J.2
van der Weijen, C.H.3
Catalano, G.4
Luther, G.W.5
Hydes, D.J.6
Woittiez, J.R.W.7
Klinkhammer, G.P.8
-
10
-
-
69949095770
-
Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget-France)
-
Debroas D, Humbert J-F, Enault F, Bronner G, Faubladier M, Cornillot E (2009) Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget-France). Environ Microbiol 11: 2412-2424.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2412-2424
-
-
Debroas, D.1
Humbert, J.-F.2
Enault, F.3
Bronner, G.4
Faubladier, M.5
Cornillot, E.6
-
11
-
-
20144382871
-
The Hawaiian Archipelago: a microbial diversity hotspot
-
Donachie SP, Hou S, Lee KS, Riley CW, Pikina A, Belisle C, Kempe S, Gregory TS, Bossuyt A, Boerema J, Liu J, Freitas TA, Malahoff A, Alam M (2004) The Hawaiian Archipelago: a microbial diversity hotspot. Microb Ecol 48: 509-520.
-
(2004)
Microb Ecol
, vol.48
, pp. 509-520
-
-
Donachie, S.P.1
Hou, S.2
Lee, K.S.3
Riley, C.W.4
Pikina, A.5
Belisle, C.6
Kempe, S.7
Gregory, T.S.8
Bossuyt, A.9
Boerema, J.10
Liu, J.11
Freitas, T.A.12
Malahoff, A.13
Alam, M.14
-
12
-
-
32244437624
-
Microbial diversity in sediments of saline Qianghai lake, China: linking geochemical controls to microbial ecology
-
Dong H, Zhang G, Jiang H, Yu B, Chapman LR, Lucas CR, Fields MW (2006) Microbial diversity in sediments of saline Qianghai lake, China: linking geochemical controls to microbial ecology. Microb Ecol 51: 65-82.
-
(2006)
Microb Ecol
, vol.51
, pp. 65-82
-
-
Dong, H.1
Zhang, G.2
Jiang, H.3
Yu, B.4
Chapman, L.R.5
Lucas, C.R.6
Fields, M.W.7
-
13
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC Jr, Rohwer F (2006) Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7: 57.
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
Peterson, D.M.6
Saar, M.O.7
Alexander, S.8
Alexander Jr., E.C.9
Rohwer, F.10
-
14
-
-
10644225888
-
Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic Epsilonproteobacteria
-
Engel AS, Porter ML, Stern LA, Quinlan S, Bennett PC (2004) Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic "Epsilonproteobacteria". FEMS Microbiol Ecol 51: 31-53.
-
(2004)
FEMS Microbiol Ecol
, vol.51
, pp. 31-53
-
-
Engel, A.S.1
Porter, M.L.2
Stern, L.A.3
Quinlan, S.4
Bennett, P.C.5
-
15
-
-
38549146894
-
The Pfam protein families database
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut JS, Hotz HR et al (2008) The Pfam protein families database. Nucleic Acids Res Database Issue 36: D281-D288.
-
(2008)
Nucleic Acids Res Database Issue
, vol.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, J.S.5
Hotz, H.R.6
-
16
-
-
4143095851
-
Mechanism of cobyrinic acid a, c-diamide synthetase from Salmonella typhimurium LT2
-
Fresquet V, Williams L, Raushel FM (2004) Mechanism of cobyrinic acid a, c-diamide synthetase from Salmonella typhimurium LT2. Biochemistry 43: 10619-10627.
-
(2004)
Biochemistry
, vol.43
, pp. 10619-10627
-
-
Fresquet, V.1
Williams, L.2
Raushel, F.M.3
-
17
-
-
6944246004
-
Methanogenic pathway and archaeal community structure in the sediment of eutrophic Lake Dagow: effect of temperature
-
Glissmann K, Chin K-J, Casper P, Conrad R (2004) Methanogenic pathway and archaeal community structure in the sediment of eutrophic Lake Dagow: effect of temperature. Microb Ecol 48: 389-399.
-
(2004)
Microb Ecol
, vol.48
, pp. 389-399
-
-
Glissmann, K.1
Chin, K.-J.2
Casper, P.3
Conrad, R.4
-
18
-
-
0000803388
-
The population frequencies of species and the estimation of population parameters
-
Good IJ (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.J.1
-
19
-
-
79951810485
-
Microbial community structures in anoxic freshwater lake sediment along a metal contamination gradient
-
Gough HL, Stahl DA (2011) Microbial community structures in anoxic freshwater lake sediment along a metal contamination gradient. ISME J 5: 543-558.
-
(2011)
ISME J
, vol.5
, pp. 543-558
-
-
Gough, H.L.1
Stahl, D.A.2
-
20
-
-
80255132366
-
Molecular methods to study complex microbial communities
-
D. Marco (Ed.), Norfolk, VA: Caister Academic Press
-
Guazzaroni ME, Golyshin PN, Ferrer M (2010) Molecular methods to study complex microbial communities. In: Marco D (ed) Metagenomics: theory, methods and applications. Caister Academic Press, Norfolk, VA, pp 55-77.
-
(2010)
Metagenomics: Theory, Methods and Applications
, pp. 55-77
-
-
Guazzaroni, M.E.1
Golyshin, P.N.2
Ferrer, M.3
-
21
-
-
57349150709
-
Bacteria associated with iron seeps in a sulfur-rich, neutral pH, freshwater ecosystem
-
Haaijer SC, Harhangi HR, Meijerink BB, Strous M, Pol A, Smolders AJ, Verwegen K, Jetten MS, Op den Camp HJ (2008) Bacteria associated with iron seeps in a sulfur-rich, neutral pH, freshwater ecosystem. ISME J 2: 1231-1242.
-
(2008)
ISME J
, vol.2
, pp. 1231-1242
-
-
Haaijer, S.C.1
Harhangi, H.R.2
Meijerink, B.B.3
Strous, M.4
Pol, A.5
Smolders, A.J.6
Verwegen, K.7
Jetten, M.S.8
Op den Camp, H.J.9
-
22
-
-
77956095014
-
Functional diversity of bacteria in a ferruginous hydrothermal sediment
-
Handley KM, Boothman C, Mills RA, Pancost RD, Lloyd JR (2010) Functional diversity of bacteria in a ferruginous hydrothermal sediment. ISME J 4: 1193-1205.
-
(2010)
ISME J
, vol.4
, pp. 1193-1205
-
-
Handley, K.M.1
Boothman, C.2
Mills, R.A.3
Pancost, R.D.4
Lloyd, J.R.5
-
23
-
-
77954055630
-
MetaBar-a tool for consistent contextual data acquisition and standards compliant submission
-
Hankeln W, Buttigieg PL, Fink D, Kottmann R, Yilmaz P, Glöckner FO (2010) MetaBar-a tool for consistent contextual data acquisition and standards compliant submission. BMC Bioinformatics 11: 358.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 358
-
-
Hankeln, W.1
Buttigieg, P.L.2
Fink, D.3
Kottmann, R.4
Yilmaz, P.5
Glöckner, F.O.6
-
24
-
-
18644375172
-
Bacterial community shift along a subsurface geothermal water stream in a Japanese gold mine
-
Hirayama H, Takai K, Inagaki F, Yamato Y, Suzuki M, Nealson KH, Horikoshi K (2005) Bacterial community shift along a subsurface geothermal water stream in a Japanese gold mine. Extremophiles 9: 169-184.
-
(2005)
Extremophiles
, vol.9
, pp. 169-184
-
-
Hirayama, H.1
Takai, K.2
Inagaki, F.3
Yamato, Y.4
Suzuki, M.5
Nealson, K.H.6
Horikoshi, K.7
-
25
-
-
58149203231
-
InterPro: the integrative protein signature database
-
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D et al (2009) InterPro: the integrative protein signature database. Nucleic Acids Res Database Issue 37: D224-D228.
-
(2009)
Nucleic Acids Res Database Issue
, vol.37
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
-
26
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Weich DM (2007) Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol 8: R143.
-
(2007)
Genome Biol
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Weich, D.M.5
-
27
-
-
49249095370
-
Lipid biomarker and phylogenetic analyses to reveal archaeal biodiversity and distribution in hypersaline microbial mat and underlying sediment
-
Jahnke LL, Orphan VJ, Embaye T, Turk KA, Kubo MD, Summons RE, des Marais DJ (2008) Lipid biomarker and phylogenetic analyses to reveal archaeal biodiversity and distribution in hypersaline microbial mat and underlying sediment. Geobiology 6: 394-410.
-
(2008)
Geobiology
, vol.6
, pp. 394-410
-
-
Jahnke, L.L.1
Orphan, V.J.2
Embaye, T.3
Turk, K.A.4
Kubo, M.D.5
Summons, R.E.6
des Marais, D.J.7
-
28
-
-
33745145824
-
Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China
-
Jiang H, Dong H, Zhang G, Yu B, Chapman LR, Fields MW (2006) Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China. Appl Environ Microbiol 72: 3832-3845.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3832-3845
-
-
Jiang, H.1
Dong, H.2
Zhang, G.3
Yu, B.4
Chapman, L.R.5
Fields, M.W.6
-
29
-
-
0035989129
-
The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach
-
Juretschko S, Loy A, Lehner A, Wagner M (2002) The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Syst Appl Microbiol 25: 84-99.
-
(2002)
Syst Appl Microbiol
, vol.25
, pp. 84-99
-
-
Juretschko, S.1
Loy, A.2
Lehner, A.3
Wagner, M.4
-
30
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M et al (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res 36: D480-D484.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
-
31
-
-
38849201472
-
Bacterial sulfite-oxidazing enzymes-enzymes for chemolithotrophs only? In: Dahl C, Friedrich CG (eds) Microbial sulfur metabolism
-
Kappler U (2008) Bacterial sulfite-oxidazing enzymes-enzymes for chemolithotrophs only? In: Dahl C, Friedrich CG (eds) Microbial sulfur metabolism. Springer-Verlag, Berlin 2008: 151.
-
(2008)
Springer-Verlag, Berlin
, vol.2008
, pp. 151
-
-
Kappler, U.1
-
32
-
-
33747052002
-
Butyrate- and propionate-degrading syntrophs from permanently cold marine sediments in Skan Bay, Alaska, and description of Algorimarina butyrica gen. nov., sp. nov
-
Kendall MM, Liu Y, Boone DR (2006) Butyrate- and propionate-degrading syntrophs from permanently cold marine sediments in Skan Bay, Alaska, and description of Algorimarina butyrica gen. nov., sp. nov. FEMS Microbiol Lett 262: 107-114.
-
(2006)
FEMS Microbiol Lett
, vol.262
, pp. 107-114
-
-
Kendall, M.M.1
Liu, Y.2
Boone, D.R.3
-
33
-
-
33846452179
-
Diversity of Archaea in marine sediments from Skan Bay, Alaska, including cultivated methanogens, and description of Methanogenium boonei sp. nov
-
Kendall MM, Wardlaw GD, Tang CF, Bonin AS, Liu Y, Valentine DL (2007) Diversity of Archaea in marine sediments from Skan Bay, Alaska, including cultivated methanogens, and description of Methanogenium boonei sp. nov. Appl Environ Microbiol 73: 407-414.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 407-414
-
-
Kendall, M.M.1
Wardlaw, G.D.2
Tang, C.F.3
Bonin, A.S.4
Liu, Y.5
Valentine, D.L.6
-
35
-
-
53849115701
-
Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
-
Konstantinidis K, DeLong EF (2008) Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. ISME J 2: 1052-1065.
-
(2008)
ISME J
, vol.2
, pp. 1052-1065
-
-
Konstantinidis, K.1
Delong, E.F.2
-
36
-
-
68549085316
-
Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre
-
Konstantinidis KT, Braff J, Karl DM, DeLong EF (2009) Comparative metagenomic analysis of a microbial community residing at a depth of 4, 000 meters at station ALOHA in the North Pacific subtropical gyre. Appl Environ Microbiol 75: 5345-5355.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5345-5355
-
-
Konstantinidis, K.T.1
Braff, J.2
Karl, D.M.3
Delong, E.F.4
-
37
-
-
80051936638
-
Unveiling microbial life in new deep-sea hypersaline Lake Thetis. Part 1: Prokaryotes and environmental settings
-
doi: 10. 1111/j. 1462-2920. 2011. 02478.x
-
La Cono V, Smedile F, Bortoluzzi G, Arcadi E, Maimone G, Borghini M, Oliveri E, Mazzola S, L'Haridon S, Genovese L, Ferrer M, Giuliano L, Golyshin PN, Yakimov V (2011) Unveiling microbial life in new deep-sea hypersaline Lake Thetis. Part 1: Prokaryotes and environmental settings. Environ Microbiol. doi: 10. 1111/j. 1462-2920. 2011. 02478.x.
-
(2011)
Environ Microbiol
-
-
la Cono, V.1
Smedile, F.2
Bortoluzzi, G.3
Arcadi, E.4
Maimone, G.5
Borghini, M.6
Oliveri, E.7
Mazzola, S.8
L'Haridon, S.9
Genovese, L.10
Ferrer, M.11
Giuliano, L.12
Golyshin, P.N.13
Yakimov, V.14
-
38
-
-
58149204132
-
Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet
-
Lau MC, Aitchison JC, Pointing SB (2009) Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet. Extremophiles 13: 139-149.
-
(2009)
Extremophiles
, vol.13
, pp. 139-149
-
-
Lau, M.C.1
Aitchison, J.C.2
Pointing, S.B.3
-
39
-
-
79955071958
-
An integrative study of a meromictic lake ecosystem in Antarctica
-
Lauro FM, Demaere MZ, Yau S, Brown MV, Ng C, Wilkins D, Raftery MJ, Gibson JA, Andrews-Pfannkoch C, Lewis M, Hoffman JM, Thomas T, Cavicchioli R (2011) An integrative study of a meromictic lake ecosystem in Antarctica. ISME J 5: 879-895.
-
(2011)
ISME J
, vol.5
, pp. 879-895
-
-
Lauro, F.M.1
Demaere, M.Z.2
Yau, S.3
Brown, M.V.4
Ng, C.5
Wilkins, D.6
Raftery, M.J.7
Gibson, J.A.8
Andrews-Pfannkoch, C.9
Lewis, M.10
Hoffman, J.M.11
Thomas, T.12
Cavicchioli, R.13
-
40
-
-
35848965494
-
Mechanistic studies of Bacillus subtilis QueF, the nitrile oxidoreductase involved in queuosine biosynthesis
-
Lee BW, van Lanen SG, Iwata-Reuyl D (2007) Mechanistic studies of Bacillus subtilis QueF, the nitrile oxidoreductase involved in queuosine biosynthesis. Biochemistry 46: 12844-12854.
-
(2007)
Biochemistry
, vol.46
, pp. 12844-12854
-
-
Lee, B.W.1
van Lanen, S.G.2
Iwata-Reuyl, D.3
-
41
-
-
32044440730
-
Anaerobic microbial communities in Lake Pavin, a unique meromictic lake in France
-
Lehours AC, Bardot C, Thenot A, Debroas D, Fonty G (2005) Anaerobic microbial communities in Lake Pavin, a unique meromictic lake in France. Appl Environ Microbiol 71: 7389-7400.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7389-7400
-
-
Lehours, A.C.1
Bardot, C.2
Thenot, A.3
Debroas, D.4
Fonty, G.5
-
42
-
-
33947386687
-
Phylogenetic diversity of Archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France)
-
Lehours AC, Evans P, Bardot C, Joblin K, Gérard F (2007) Phylogenetic diversity of Archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France). Appl Environ Microbiol 73: 2016-2019.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2016-2019
-
-
Lehours, A.C.1
Evans, P.2
Bardot, C.3
Joblin, K.4
Gérard, F.5
-
43
-
-
33646584137
-
Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
-
Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM, Maresca JA, Bryant DA, Sogin ML, Pace NR (2006) Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl Environ Microbiol 72: 3685-3695.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3685-3695
-
-
Ley, R.E.1
Harris, J.K.2
Wilcox, J.3
Spear, J.R.4
Miller, S.R.5
Bebout, B.M.6
Maresca, J.A.7
Bryant, D.A.8
Sogin, M.L.9
Pace, N.R.10
-
44
-
-
53949086905
-
High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study
-
Llirós M, Casamayor EO, Borrego C (2008) High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study. FEMS Microbiol Ecol 66: 331-342.
-
(2008)
FEMS Microbiol Ecol
, vol.66
, pp. 331-342
-
-
Llirós, M.1
Casamayor, E.O.2
Borrego, C.3
-
45
-
-
78649699808
-
Extremely halophilic microbial communities in anaerobic sediments from a solar saltern
-
López-López A, Yarza P, Richter M, Suárez-Suárez A, Antón J, Niemann H, Rosselló-Móra R (2011) Extremely halophilic microbial communities in anaerobic sediments from a solar saltern. Environ Microbiol Rep 2: 258-271.
-
(2011)
Environ Microbiol Rep
, vol.2
, pp. 258-271
-
-
López-López, A.1
Yarza, P.2
Richter, M.3
Suárez-Suárez, A.4
Antón, J.5
Niemann, H.6
Rosselló-Móra, R.7
-
46
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar BA et al (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, B.A.6
-
47
-
-
0025316905
-
Layered structure of bacterial aggregates produced in an upflow anaerobic sludge bed and filter reactor
-
MacLeod FA, Guiot SR, Costerton JW (1990) Layered structure of bacterial aggregates produced in an upflow anaerobic sludge bed and filter reactor. Appl Environ Microbiol 56: 1598-1607.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1598-1607
-
-
Macleod, F.A.1
Guiot, S.R.2
Costerton, J.W.3
-
48
-
-
4444260516
-
Microbial population dynamics in the sediments of a eutrophic lake (Aydat, France) and characterization of some heterotrophic bacterial isolates
-
Mallet C, Basset M, Fonty G, Desvilettes C, Bourdier G, Debroas D (2004) Microbial population dynamics in the sediments of a eutrophic lake (Aydat, France) and characterization of some heterotrophic bacterial isolates. Microb Ecol 48: 66-77.
-
(2004)
Microb Ecol
, vol.48
, pp. 66-77
-
-
Mallet, C.1
Basset, M.2
Fonty, G.3
Desvilettes, C.4
Bourdier, G.5
Debroas, D.6
-
49
-
-
33846530630
-
Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila
-
Markert S, Arnd C, Felback H, Becher D, Sievert SM et al (2007) Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila. Science 315: 247-250.
-
(2007)
Science
, vol.315
, pp. 247-250
-
-
Markert, S.1
Arnd, C.2
Felback, H.3
Becher, D.4
Sievert, S.M.5
-
50
-
-
0037561991
-
GenDB-an open source genome annotation system for prokaryote genomes
-
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J et al (2003) GenDB-an open source genome annotation system for prokaryote genomes. Nucleic Acids Res 31: 2187-2195.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2187-2195
-
-
Meyer, F.1
Goesmann, A.2
McHardy, A.C.3
Bartels, D.4
Bekel, T.5
Clausen, J.6
-
51
-
-
53549118607
-
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
Paczian, T.7
Rodriguez, A.8
Stevens, R.9
Wilke, A.10
Wilkening, J.11
Edwards, R.A.12
-
52
-
-
0014757386
-
-
Needleman SB, Wunsch CD (1970) A general method applicable to the search for similarities in the amino acid sequences of two proteins. J Mol Biol 48: 443-453.
-
(1970)
J Mol Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
53
-
-
34547572982
-
Bacterial diversity and distribution in the holocene sediments of a northern temperate lake
-
Nelson DM, Ohene-Adjei S, Hu FS, Cann IK, Mackie RI (2007) Bacterial diversity and distribution in the holocene sediments of a northern temperate lake. Microb Ecol 54: 252-263.
-
(2007)
Microb Ecol
, vol.54
, pp. 252-263
-
-
Nelson, D.M.1
Ohene-Adjei, S.2
Hu, F.S.3
Cann, I.K.4
Mackie, R.I.5
-
54
-
-
67149131585
-
Archaeal diversity and the prevalence of Crenarchaeota in salt marsh sediments
-
Nelson KA, Moin NS, Bernhard AE (2009) Archaeal diversity and the prevalence of Crenarchaeota in salt marsh sediments. Appl Environ Microbiol 75: 4211-4215.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4211-4215
-
-
Nelson, K.A.1
Moin, N.S.2
Bernhard, A.E.3
-
55
-
-
29144477923
-
Bacterial populations active in metabolism of C1 compounds in the sediment of Lake Washington, a freshwater lake
-
Nercessian O, Noyes E, Kalyuzhnaya MG, Lidstrom ME, Chistoserdova L (2005) Bacterial populations active in metabolism of C1 compounds in the sediment of Lake Washington, a freshwater lake. Appl Environ Microbiol 71: 6885-6899.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6885-6899
-
-
Nercessian, O.1
Noyes, E.2
Kalyuzhnaya, M.G.3
Lidstrom, M.E.4
Chistoserdova, L.5
-
56
-
-
33750976398
-
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences
-
Noguchi H, Park J, Takagi T (2006) MetaGene: prokaryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res 34: D5623-D5630.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Noguchi, H.1
Park, J.2
Takagi, T.3
-
57
-
-
44249116888
-
Biogeochemistry and community composition of iron- and sulfur-precipitating microbial mats at the Chefren mud volcano (Nile Deep Sea Fan, Eastern Mediterranean)
-
Omoregie EO, Mastalerz V, de Lange G, Straub KL, Kappler A, Røy H, Stadnitskaia A, Foucher JP, Boetius A (2008) Biogeochemistry and community composition of iron- and sulfur-precipitating microbial mats at the Chefren mud volcano (Nile Deep Sea Fan, Eastern Mediterranean). Appl Environ Microbiol 74: 3198-3215.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 3198-3215
-
-
Omoregie, E.O.1
Mastalerz, V.2
de Lange, G.3
Straub, K.L.4
Kappler, A.5
Røy, H.6
Stadnitskaia, A.7
Foucher, J.P.8
Boetius, A.9
-
58
-
-
34547117885
-
Growth-dependent phosphorylation of the PtsN (EIINtr) protein of Pseudomonas putida
-
Pflüger K, de Lorenzo V (2007) Growth-dependent phosphorylation of the PtsN (EIINtr) protein of Pseudomonas putida. J Biol Chem 282: 18206-18211.
-
(2007)
J Biol Chem
, vol.282
, pp. 18206-18211
-
-
Pflüger, K.1
de Lorenzo, V.2
-
59
-
-
78149466172
-
Characterization of archaeal community in contaminated and uncontaminated surface stream sediments
-
Porat I, Vishnivetskaya TA, Mosher JJ, Brandt CC, Yang ZK, Brooks SC, Liang L, Drake MM, Podar M, Brown SD, Palumbo AV (2010) Characterization of archaeal community in contaminated and uncontaminated surface stream sediments. Microb Ecol 60: 784-795.
-
(2010)
Microb Ecol
, vol.60
, pp. 784-795
-
-
Porat, I.1
Vishnivetskaya, T.A.2
Mosher, J.J.3
Brandt, C.C.4
Yang, Z.K.5
Brooks, S.C.6
Liang, L.7
Drake, M.M.8
Podar, M.9
Brown, S.D.10
Palumbo, A.V.11
-
60
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
62
-
-
42249105570
-
JCoast-a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
-
Richter M, Lombardot T, Kostadinov I, Kottmann R, Peplies J, Duhaime MB, Glöckner FO (2008) JCoast-a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. BMC Bioinformatics 9: 177.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 177
-
-
Richter, M.1
Lombardot, T.2
Kostadinov, I.3
Kottmann, R.4
Peplies, J.5
Duhaime, M.B.6
Glöckner, F.O.7
-
63
-
-
67549099704
-
Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge
-
Rivière D, Desvignes V, Pelletier E, Chaussonnerie S, Guermazi S, Weissenbach J, Li T, Camacho P, Sghir A (2009) Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME J 3: 700-714.
-
(2009)
ISME J
, vol.3
, pp. 700-714
-
-
Rivière, D.1
Desvignes, V.2
Pelletier, E.3
Chaussonnerie, S.4
Guermazi, S.5
Weissenbach, J.6
Li, T.7
Camacho, P.8
Sghir, A.9
-
66
-
-
37849002864
-
Subsurface microbial diversity in deep-granitic-fracture water in Colorado
-
Sahl JW, Schmidt R, Swanner ED, Mandernack KW, Templeton AS, Kieft TL, Smith RL, Sanford WE, Callaghan RL, Mitton JB, Spear JR (2008) Subsurface microbial diversity in deep-granitic-fracture water in Colorado. Appl Environ Microbiol 74: 143-152.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 143-152
-
-
Sahl, J.W.1
Schmidt, R.2
Swanner, E.D.3
Mandernack, K.W.4
Templeton, A.S.5
Kieft, T.L.6
Smith, R.L.7
Sanford, W.E.8
Callaghan, R.L.9
Mitton, J.B.10
Spear, J.R.11
-
67
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
68
-
-
33846109266
-
Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA
-
Schwarz JI, Lueders T, Eckert W, Conrad R (2007) Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA. Environ Microbiol 9: 223-237.
-
(2007)
Environ Microbiol
, vol.9
, pp. 223-237
-
-
Schwarz, J.I.1
Lueders, T.2
Eckert, W.3
Conrad, R.4
-
69
-
-
33947271334
-
Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel)
-
Schwarz JIK, Eckert W, Conrad R (2007) Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel). Sys Appl Microbiol 30: 239-254.
-
(2007)
Sys Appl Microbiol
, vol.30
, pp. 239-254
-
-
Schwarz, J.I.K.1
Eckert, W.2
Conrad, R.3
-
71
-
-
41549141861
-
Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study
-
Slot JC, Hibbett DS (2007) Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study. PLoS One 10: e1097.
-
(2007)
PLoS One
, vol.10
-
-
Slot, J.C.1
Hibbett, D.S.2
-
72
-
-
77954401342
-
Sulfidogenesis under extremely haloalkaline conditions in soda lakes of Kulunda Steppe (Altai, Russia)
-
Sorokin DY, Rusanov II, Pimenov NV, Tourova TP, Abbas B, Muyzer G (2010) Sulfidogenesis under extremely haloalkaline conditions in soda lakes of Kulunda Steppe (Altai, Russia). FEMS Microbiol Ecol 73: 278-290.
-
(2010)
FEMS Microbiol Ecol
, vol.73
, pp. 278-290
-
-
Sorokin, D.Y.1
Rusanov, I.I.2
Pimenov, N.V.3
Tourova, T.P.4
Abbas, B.5
Muyzer, G.6
-
73
-
-
75749088428
-
Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea
-
Swan BK, Ehrhardt CJ, Reifel KM, Moreno LI, Valentine DL (2010) Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea. Appl Environ Microbiol 76: 757-768.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 757-768
-
-
Swan, B.K.1
Ehrhardt, C.J.2
Reifel, K.M.3
Moreno, L.I.4
Valentine, D.L.5
-
74
-
-
17444372781
-
Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques
-
Tamaki H, Sekiguchi Y, Hanada S, Nakamura K, Nomura N, Matsumura M, Kamagata Y (2005) Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl Environ Microbiol 71: 2162-2169.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2162-2169
-
-
Tamaki, H.1
Sekiguchi, Y.2
Hanada, S.3
Nakamura, K.4
Nomura, N.5
Matsumura, M.6
Kamagata, Y.7
-
75
-
-
78649403567
-
Horizontal gene transfer in prokaryotic microbial communities
-
D. Marco (Ed.), Norfolk, VA: Caister Academic Press
-
Tamames J, Mira A (2010) Horizontal gene transfer in prokaryotic microbial communities. In: Marco D (ed) Metagenomics: theory, methods and applications. Caister Academic Press, Norfolk, VA, pp 39-53.
-
(2010)
Metagenomics: Theory, Methods and Applications
, pp. 39-53
-
-
Tamames, J.1
Mira, A.2
-
76
-
-
68549109487
-
Characterization of bacterial communities associated with organic aggregates in a large, shallow, eutrophic freshwater lake (Lake Taihu, China)
-
Tang X, Gao G, Qin B, Zhu L, Chao J, Wang J, Yang G (2009) Characterization of bacterial communities associated with organic aggregates in a large, shallow, eutrophic freshwater lake (Lake Taihu, China). Microb Ecol 58: 307-322.
-
(2009)
Microb Ecol
, vol.58
, pp. 307-322
-
-
Tang, X.1
Gao, G.2
Qin, B.3
Zhu, L.4
Chao, J.5
Wang, J.6
Yang, G.7
-
77
-
-
0035162592
-
The COG database: new developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS et al (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 29: 22-28.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
-
78
-
-
41149093627
-
Uncultured archaea in deep marine subsurface sediments: have we caught them all?
-
Teske A, Sorensen KB (2008) Uncultured archaea in deep marine subsurface sediments: have we caught them all? ISME J 2: 3-18.
-
(2008)
ISME J
, vol.2
, pp. 3-18
-
-
Teske, A.1
Sorensen, K.B.2
-
79
-
-
0035316138
-
Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment
-
Thomsen TR, Finster K, Ramsing NB (2001) Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment. Appl Environ Microbiol 67: 1646-1656.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1646-1656
-
-
Thomsen, T.R.1
Finster, K.2
Ramsing, N.B.3
-
80
-
-
57049120142
-
Prokaryotic community profiles at different operational stages of a Greek solar saltern
-
Tsiamis G, Katsaveli K, Ntougias S, Kyrpides N, Andersen G, Piceno Y, Bourtzis K (2008) Prokaryotic community profiles at different operational stages of a Greek solar saltern. Res Microbiol 159: 609-627.
-
(2008)
Res Microbiol
, vol.159
, pp. 609-627
-
-
Tsiamis, G.1
Katsaveli, K.2
Ntougias, S.3
Kyrpides, N.4
Andersen, G.5
Piceno, Y.6
Bourtzis, K.7
-
81
-
-
79952117131
-
Molecular methods to study complex microbial communities
-
Vieites JM, Guazzaroni ME, Beloqui A, Golyshin PN, Ferrer M (2010) Molecular methods to study complex microbial communities. Methods Mol Biol 668: 1-37.
-
(2010)
Methods Mol Biol
, vol.668
, pp. 1-37
-
-
Vieites, J.M.1
Guazzaroni, M.E.2
Beloqui, A.3
Golyshin, P.N.4
Ferrer, M.5
-
82
-
-
79953277313
-
Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh
-
Wang J, Vollrath S, Behrends T, Bodelier PL, Muyzer G, Meima-Franke M, Den Oudsten F, van Cappellen P, Laanbroek HJ (2011) Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh. Appl Environ Microbiol 77: 2337-2344.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 2337-2344
-
-
Wang, J.1
Vollrath, S.2
Behrends, T.3
Bodelier, P.L.4
Muyzer, G.5
Meima-Franke, M.6
den Oudsten, F.7
van Cappellen, P.8
Laanbroek, H.J.9
-
83
-
-
34250001696
-
Bacterial community composition of a shallow hypertrophic freshwater lake in China, revealed by 16S rRNA gene sequences
-
Wu X, Xi W, Ye W, Yang H (2007) Bacterial community composition of a shallow hypertrophic freshwater lake in China, revealed by 16S rRNA gene sequences. FEMS Microbiol Ecol 61: 85-96.
-
(2007)
FEMS Microbiol Ecol
, vol.61
, pp. 85-96
-
-
Wu, X.1
Xi, W.2
Ye, W.3
Yang, H.4
-
84
-
-
52149085893
-
The All-Species Living Tree Project: a 16S rRNA-based phylogenetic tree of all sequenced type strains
-
Yarza P, Richter M, Peplies J, Euzéby J, Amann R, Schleifer K-H et al (2008) The All-Species Living Tree Project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31: 241-250.
-
(2008)
Syst Appl Microbiol
, vol.31
, pp. 241-250
-
-
Yarza, P.1
Richter, M.2
Peplies, J.3
Euzéby, J.4
Amann, R.5
Schleifer, K.-H.6
-
85
-
-
70349852874
-
The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu
-
Ye W, Liu X, Lin S, Tan J, Pan J, Li D, Yang H (2009) The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu. FEMS Microbiol Ecol 70: 107-120.
-
(2009)
FEMS Microbiol Ecol
, vol.70
, pp. 107-120
-
-
Ye, W.1
Liu, X.2
Lin, S.3
Tan, J.4
Pan, J.5
Li, D.6
Yang, H.7
-
86
-
-
32244448898
-
Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea
-
Zaballos M, López-López A, Øvreås L, Galán-Bartual S, D'Auria G, Alba-Casado J et al (2006) Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea. FEMS Microbiol Ecol 56: 389-405.
-
(2006)
FEMS Microbiol Ecol
, vol.56
, pp. 389-405
-
-
Zaballos, M.1
López-López, A.2
Øvreås, L.3
Galán-Bartual, S.4
D'Auria, G.5
Alba-Casado, J.6
-
87
-
-
0024526419
-
Methanocorpusculaceae fam. nov., represented by Methanocorpusculum parvum, Methanocorpusculum sinense spec. nov. and Methanocorpusculum bavaricum spec. nov
-
Zellner G, Stackebrandt E, Messner P, Tindall BJ, Conway de Macario E, Kneifel H, Sleytr UB, Winter J (1989) Methanocorpusculaceae fam. nov., represented by Methanocorpusculum parvum, Methanocorpusculum sinense spec. nov. and Methanocorpusculum bavaricum spec. nov. Arch Microbiol 151: 381-390.
-
(1989)
Arch Microbiol
, vol.151
, pp. 381-390
-
-
Zellner, G.1
Stackebrandt, E.2
Messner, P.3
Tindall, B.J.4
Conway de Macario, E.5
Kneifel, H.6
Sleytr, U.B.7
Winter, J.8
|