Survey of the 2009 commercial optical biosensor literature

Journal of Molecular Recognition

Volumn 24, Issue 6, 2011, Pages 892-914

  Rich, Rebecca L ^a   Myszka, David G ^a  

^a UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

affinity; Biacore; biolayer interferometry; biomolecular interaction analysis; evanescent wave; kinetics; resonant mirror; surface plasmon resonance

Indexed keywords

GENETIC PROCEDURES; INFORMATION PROCESSING; OPTICAL INSTRUMENTATION; PEER REVIEW; REVIEW; UTILIZATION REVIEW;

BIOSENSING TECHNIQUES; DATA COLLECTION; OPTICAL DEVICES; PEER REVIEW, RESEARCH;

EID: 80155209778     PISSN: 09523499     EISSN: 10991352     Source Type: Journal    
DOI: 10.1002/jmr.1138     Document Type: Review

References (317)

1. Rich RL, Myszka DG,. 2010. Grading the commercial optical biosensor literature-Class of 2008: 'The Mighty Binders'. J. Mol. Recognit. 23: 1-64.
2. Blow N,. 2009. Proteins and proteomics: life on the surface. Nat. Methods 6: 389-392.
3. Chuang VT, Maruyama T, Otagiri M,. 2009. Updates on contemporary protein binding techniques. Drug Metab. Pharmacokinet. 24: 358-364.
4. Danielson U,. 2009. Integrating surface plasmon resonance biosensor-based interaction kinetic analyses into the lead discovery and optimization process. Future Med. Chem. 1: 1399-1414.
5. Danielson U,. 2009. Fragment library screening and lead characterization using SPR biosensors. Curr. Topics Med. Chem. 9: 1725-1735.
6. Dostálek J, Huang CJ, Knoll W,. 2009. Tutorial review: surface plasmon resonance-based biosensors. In Surface design: applications in bioscience and nanotechnology, Förch R, Schönherr H, Jenkins TA, (eds). Wiley-VCH Verlag GmbH & Co. KGaA: Weinheim, Germany, 29-53.
7. Dover JE, Hwang GM, Mullen EH, Prorok BC, Suh S-J,. 2009. Recent advances in peptide probe-based biosensors for detection of infectious agents. J. Microbiol. Methods 78: 10-19.
8. Dudak FC, Boyaci IH,. 2009. Rapid and label-free bacteria detection by surface plasmon resonance (SPR) biosensors. Biotechnol. J. 4: 1003-1011.
9. Ernst RE, High KN, Glass TR, Zhao Q,. 2009. Determination of equilibrium dissociation constants. In Therapeutic monoclonal antibodies, Zhiqiang An, (ed.). John Wiley & Sons, Ltd: Malden, MA, 503-524.
10. Hodnik V, Anderluh G,. 2009. Toxin detection by surface plasmon resonance. Sensors 9: 1339-1354.
11. Lausted C, Hu Z, Hood L, Campbell CT,. 2009. SPR imaging for high throughput, label-free interaction analysis. Comb. Chem. High Throughput Screen. 12: 741-751.
12. Mayer G, Famulok M,. 2009. In vitro selection of conformational probes for riboswitches. Methods Mol. Biol. 540: 291-300.
13. Maynard JA, Lindquist NC, Sutherland JN, Lesuffleur A, Warrington AE, Rodriguez M, Oh S-H,. 2009. Surface plasmon resonance for high-throughput ligand screening of membrane-bound proteins. Biotechnol. J. 4: 1542-1558.
14. Minunni M, Bilia A,. 2009. SPR in drug discovery: searching bioactive compounds in plant extracts. Methods Mol. Biol. 572: 203-218.
15. Mukundan H, Anderson AS, Grace WK, Grace KM, Hartman N, Martinez JS, Swanson BI,. 2009. Waveguide-based biosensors for pathogen detection. Sensors 9: 5783-5809.
16. Nakatani K,. 2009. Recognition of mismatched base pairs in DNA. Bull. Chem. Soc. Japan 82: 1055-1069.
17. Paul S, Vadgama P, Ray AK,. 2009. Surface plasmon resonance imaging for biosensing. IET Nanobiotechnol. 3: 71-80.
18. Petz M,. 2009. Recent applications of surface plasmon resonance biosensors for analyzing residues and contaminants in food. Monatsh Chemie 140: 953-964.
19. Piliarik M, Vaisocherová H, Homola J,. 2009. Surface plasmon resonance biosensing. Methods Mol. Biol. 503: 65-88.
20. Poltronieri P, de Blasi MD, D'Urso OF,. 2009. Detection of Listeria monocytogenes through real-time PCR and biosensor methods. Plant Soil Environ. 55: 363-369.
21. Prabhakar V, Capila I, Sasisekharan R,. 2009. Glycosaminoglycan characterization methodologies: probing biomolecular interactions. Methods Mol. Biol. 534: 331-340.
22. Pröll F, Fechner P, Proll G,. 2009. Direct optical detection in fragment-based screening. Anal. Bioanal. Chem. 393: 1557-1562.
23. Qavi AJ, Washburn AL, Byeon J-Y, Bailey RC,. 2009. Label-free technologies for quantitative multiparameter biological analysis. Anal. Bioanal. Chem. 394: 121-135.
24. Renaud J-P, Delsuc M-A,. 2009. Biophysical techniques for ligand screening and drug design. Curr. Opin. Pharmacol. 9: 622-628.
25. Rich RL, Myszka DG,. 2009. Extracting affinity constants from biosensor binding responses. In Label-free biosensors: techniques and applications, Cooper M, (ed.). Cambridge University Press: Cambridge, 48-84.
26. Rich RL, Myszka DG,. 2009. Extracting kinetic rate constants from biosensor binding responses. In Label-free biosensors: techniques and applications, Cooper M, (ed.). Cambridge University Press: Cambridge, 85-109.
27. Richens JL, Urbanowicz RA, Lunt EA, Metcalf R, Corne J, Fairclough L, O'Shea P,. 2009. Systems biology coupled with label-free high-throughput detection as a novel approach for diagnosis of chronic obstructive pulmonary disease. Respir. Res. 10: 29.
28. Safsten P,. 2009. Epitope mapping by surface plasmon resonance. Methods Mol. Biol. 524: 67-76.
29. Schubert-Ullrich P, Rudolf J, Ansari P, Galler B, Führer M, Molinelli A, Baumgartner S,. 2009. Commercialized rapid immunoanalytical tests for determination of allergenic food proteins: an overview. Anal. Bioanal. Chem. 395: 69-81.
30. Shaw I, Kane M,. 2009. The isolation of scFvs against small target molecules. Methods Mol. Biol. 562: 83-97.
31. Shiroya T, Tanaka H, Hanasaki M, Takeuchi H,. 2009. Preparation of highly sensitive protein array using reactive polymer. Methods Mol. Biol. 577: 215-225.
32. Song EH, Pohl NL,. 2009. Carbohydrate arrays: recent developments in fabrication and detection methods with applications. Curr. Opin. Chem. Biol. 13: 626-632.
33. Stephen AG, Fisher RJ,. 2009. Methods for the analysis of HIV-1 nucleocapsid protein interactions with oligonucleotides. Methods Mol. Biol. 485: 209-221.
34. Turnbull A, Swarbrick M,. 2009. Harnessing fragment-based drug discovery at CRT. Drug Discov. World Fall: 57-64.
35. Velasco-Garcia MN,. 2009. Optical biosensors for probing at the cellular level: a review of recent progress and future prospects. Semin. Cell Dev. Biol. 20: 27-33.
36. Villiers M-B, Cortès S, Brakha C, Marche P, Roget A, Livache T,. 2009. Polypyrrole-peptide microarray for biomolecular interaction analysis by SPR imaging. Methods Mol. Biol. 570: 317-328.
37. Watrin M, Dausse E, Lebars I, Rayner B, Bugaut A, Toulmé J-J,. 2009. Aptamers targeting RNA molecules. Methods Mol. Biol. 535: 79-105.
38. Willander M, Al-Hilli S,. 2009. Analysis of biomolecules using surface plasmons. Methods Mol. Biol. 544: 201-229.
39. Zourob M, Elwary S, Fan X, Mohr S, Goddard NJ,. 2009. Label-free detection with the resonant mirror biosensor. Methods Mol. Biol. 503: 89-138.
40. Andersson O, Nikkinen H, Kanmert D, Enander K,. 2009. A multiple-ligand approach to extending the dynamic range of analyte quantification in protein microarrays. Biosens. Bioelectron. 24: 2458-2464.
41. 42 by a high affinity monoclonal antibody. Mol. Immunol. 46: 2267-2273.
42. Baardsnes J, Hinck CS, Hinck AP, O'Connor-McCourt MD,. 2009. TβR-II discriminates the high-and low-affinity TGF-β isoforms via two hydrogen-bonded ion pairs. Biochemistry 48: 2146-2155.
43. Binnerts M, Tomasevic N, Bright JM, Leung J, Ahn VE, Kim K-A, Zhan X, Liu S, Yonkovich S, Williams J, Zhou M, Gros D, Dixon M, Korver W, Weis WI, Abo A,. 2009. The first propeller domain of LRP6 regulates sensitivity to DKK1. Mol. Biol. Cell 20: 3552-3560.
44. Bodenreider C, Beer D, Keller TH, Sonntag S, Wen D, Yap L, Yau YH, Shochat SG, Huang D, Zhou T, Caflisch A, Su X-C, Ozawa K, Otting G, Vasudevan SG, Lescar J, Lim SP,. 2009. A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease. Anal. Biochem. 395: 195-204.
45. Castaño A, Lin S-L, Surowy T, Nowlin BT, Turlapati SA, Patel T, Singh A, Li S, Lupher Jr ML, Duffield JS,. 2009. Serum amyloid P inhibits fibrosis through FcγR-dependent monocyte-macrophage regulation in vivo. Sci. Transl. Med. 1: 5ra13.
46. Chervin AS, Stone JD, Holler PD, Bai A, Chen J, Eisen HN, Kranz DM,. 2009. The impact of TCR-binding properties and antigen presentation format on T cell responsiveness. J. Immunol. 183: 1166-1178.
47. Chollangi S, Wang J, Martin A, Quinn J, Ash JD,. 2009. Preconditioning-induced protection from oxidative injury is mediated by leukemia inhibitory factor receptor (LIFR) and its ligands in the retina. Neurobiol. Dis. 34: 535-544.
48. Collarini E, Lee FE-H, Foord O, Park M, Sperinde G, Wu H, Harriman WD, Carroll SF, Ellsworth SL, Anderson LJ, Tripp RA, Walsh EE, Keyt BA, Kauvar LM,. 2009. Potent high-affinity antibodies for treatment and prophylaxis of respiratory syncytial virus derived from B cells of infected patients. J. Immunol. 183: 6338-6345.
49. Concepcion J, Witte K, Wartchow C, Choo S, Yao D, Persson H, Wei J, Li P, Heidecker B, Ma W, Varma R, Zhao L-S, Perillat D, Carricato G, Recknor M, Du K, Ho H, Ellis T, Gamez J, Howes M, Phi-Wilson J, Lockard S, Zuk R, Tan H,. 2009. Label-free detection of biomolecular interactions using BioLayer interferometry for kinetic characterization. Comb. Chem. High Throughput Screen. 12: 791-800.
50. Cuccioloni M, Montecchia F, Amici M, Mozzicafreddo M, Eleuteri AM, Angeletti M,. 2009. Co-chaperonin GroES as a modulator of proteasomal activity. J. Mol. Recognit. 22: 46-54.
51. Daouti S, Wang H, Li W-h, Higgins B, Kolinsky K, Packman K, Specian Jr A, Kong N, Huby N, Wen Y, Xiang Q, Podlaski FJ, He Y, Fotouhi N, Heimbrook D, Niu H,. 2009. Characterization of a novel mitogen-activated protein kinase kinase 1/2 inhibitor with a unique mechanism of action for cancer therapy. Cancer Res. 69: 1924-1932.
52. De Rybel B, Audenaert D, Vert G, Rozhon W, Mayerhofer J, Peelman F, Coutuer S, Denayer T, Jansen L, Nguyen L, Vanhoutte I, Beemster GTS, Vleminckx K, Jonak C, Chory J, Inzé D, Russinova E, Beeckman T,. 2009. Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling. Chem. Biol. 16: 594-604.
53. Deinum J, Mattsson C, Inghardt T, Elg M,. 2009. Biochemical and pharmacological effects of the direct thrombin inhibitor AR-H067637. Thromb. Haemost. 101: 1051-1059.
54. Devemy E, Blaschuk OW,. 2009. Identification of a novel dual E-and N-cadherin antagonist. Peptides 30: 1539-1547.
55. Dragoni E, Calderone V, Fragai M, Jaiswal R, Luchinat C, Nativi C,. 2009. Biotin-tagged probes for MMP expression and activation: design, synthesis, and binding properties. Bioconjug. Chem. 20: 719-727.
56. Egler C, Albert T, Brokemper O, Zabe-Kühn M, Mayer G, Oldenburg J, Schwaab R,. 2009. Kinetic parameters of monoclonal antibodies ESH2, ESH4, ESH5, and ESH8 on coagulation factor VIII and their influence on factor VIII activity. J. Mol. Recognit. 22: 301-306.
57. Eisenberg S, Korza G, Carson J, Liachko I, Tye B-K,. 2009. Novel DNA binding properties of the Mcm10 protein from Saccharomyces cerevisiae. J. Biol. Chem. 284: 25412-25420.
58. Ely LK, Fischer S, Garcia KC,. 2009. Structural basis of receptor sharing by interleukin 17 cytokines. Nat. Immunol. 10: 1245-1251.
59. Ezerzer C, Dolgin M, Skovorodnikova J, Harris N,. 2009. Chemokine receptor-derived peptides as multi-target drug leads for the treatment of inflammatory diseases. Peptides 30: 1296-1305.
60. Fabian M, Solomaha E, Olson JS, Maresso AW,. 2009. Heme transfer to the bacterial cell envelope occurs via a secreted hemophore in the Gram-positive pathogen Bacillus anthracis. J. Biol. Chem. 284: 32138-32146.
61. Floss DM, Sack M, Arcalis E, Stadlmann J, Quendler H, Rademacher T, Stoger E, Scheller J, Fischer R, Conrad U,. 2009. Influence of elastin-like peptide fusions on the quantity and quality of a tobacco-derived human immunodeficiency virus-neutralizing antibody. Plant Biotechnol. J. 7: 899-913.
62. Gesuete R, Storini C, Fantin A, Stravalaci M, Zanier ER, Orsini F, Vietsch H, Mannesse MLM, Ziere B, Gobbi M, De Simoni M-G,. 2009. Recombinant C1 inhibitor in brain ischemic injury. Ann. Neurol. 66: 332-342.
63. Gopi H, Cocklin S, Pirrone V, McFadden K, Tuzer F, Zentner I, Ajith S, Baxter S, Jawanda N, Krebs FC, Chaiken IM,. 2009. Introducing metallocene into a triazole peptide conjugate reduces its off-rate and enhances its affinity and antiviral potency for HIV-1 gp120. J. Mol. Recognit. 22: 169-174.
64. Haidar JN, Pierce B, Yu Y, Tong W, Li M, Weng Z,. 2009. Structure-based design of a T-cell receptor leads to nearly 100-fold improvement in binding affinity for pepMHC. Proteins 74: 948-960.
65. Han S, Mistry A, Chang JS, Cunningham D, Griffor M, Bonnette PC, Wang H, Chrunyk BA, Aspnes GE, Walker DP, Brosius AD, Buckbinder L,. 2009. Structural characterization of proline-rich tyrosine kinase 2 (PYK2) reveals a unique (DFG-out) conformation and enables inhibitor design. J. Biol. Chem. 284: 13193-13201.
66. Harris KS, Casey JL, Coley AM, Karas JA, Sabo JK, Tan YY, Dolezal O, Norton RS, Hughes AB, Scanlon D, Foley M,. 2009. Rapid optimization of a peptide inhibitor of malaria parasite invasion by comprehensive N-methyl scanning. J. Biol. Chem. 284: 9361-9371.
67. Hosse RJ, Tay L, Hattarki MK, Pontes-Braz L, Pearce LA, Nuttall SD, Dolezal O,. 2009. Kinetic screening of antibody-Im7 conjugates by capture on a colicin E7 DNase domain using optical biosensors. Anal. Biochem. 385: 346-357.
68. Huang J, Makabe K, Biancalana M, Koide A, Koide S,. 2009. Structural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution. J. Mol. Biol. 392: 1221-1231.
69. Ishida T, Takizawa Y, Kainuma T, Inoue J, Mikawa T, Shibata T, Suzuki H, Tashiro S, Kurumizaka H,. 2009. DIDS, a chemical compound that inhibits RAD51-mediated homologous pairing and strand exchange. Nucleic Acids Res. 37: 3367-3376.
70. Jecklin MC, Schauer S, Dumelin CE, Zenobi R,. 2009. Label-free determination of protein-ligand binding constants using mass spectrometry and validation using surface plasmon resonance and isothermal titration calorimetry. J. Mol. Recognit. 22: 319-329.
71. Jeong J, Rao AU, Xu J, Ogg SL, Hathout Y, Fenselau C, Mather IH,. 2009. The PRY/SPRY/B30.2 domain of butyrophilin 1A1 (BTN1A1) binds to xanthine oxidoreductase. J. Biol. Chem. 284: 22444-22456.
72. Ji C, Kopetzki E, Jekle A, Stubenrauch K-G, Liu X, Zhang J, Rao E, Schlothauer T, Fischer S, Cammack N, Heilek G, Ries S, Sankuratri S,. 2009. CD4-anchoring HIV-1 fusion inhibitor with enhanced potency and in vivo stability. J. Biol. Chem. 284: 5175-5185.
73. Jorgensen TJ, Chen K, Chasovskikh S, Roy R, Dritschilo A, Üren A,. 2009. Binding kinetics and activity of human poly(ADP-ribose) polymerase-1 on oligo-deoxyribonucleotide substrates. J. Mol. Recognit. 22: 446-452.
74. Kassa A, Madani N, Schön A, Haim H, Finzi A, Xiang S-H, Wang L, Princiotto A, Pancera M, Courter J, Smith III AB, Freire E, Kwong PD, Sodroski J,. 2009. Transitions to and from the CD4-bound conformation are modulated by a single-residue change in the HIV-1 gp120 inner domain. J. Virol. 83: 8364-8378.
75. Kawsar SM, Matsumoto R, Fujii Y, Yasumitsu H, Uchiyama H, Hosono M, Nitta K, Hamako J, Matsui T, Kojima N, Ozeki Y,. 2009. Glycan-binding profile and cell adhesion activity of American bullfrog (Rana catesbeiana) oocyte galectin-1. Prot. Pept. Lett. 16: 677-684.
76. Kim HJ, Eichinger A, Skerra A,. 2009. High-affinity recognition of lanthanide(III) chelate complexes by a reprogrammed human lipocalin 2. J. Am. Chem. Soc. 131: 3565-3576.
77. Klein JS, Gnanapragasam PNP, Galimidi RP, Foglesong CP, West Jr AP, Bjorkman PJ,. 2009. Examination of the contributions of size and avidity to the neutralization mechanisms of the anti-HIV antibodies b12 and 4E10. Proc. Natl Acad. Sci. USA 106: 7385-7390.
78. Koide A, Wojcik J, Gilbreth RN, Reichel A, Piehler J, Koide S,. 2009. Accelerating phage-display library selection by reversible and site-specific biotinylation. Prot. Eng. Des. Sel. 22: 685-690.
79. Krishnamoorthy G, Carlen ET, Beusink JB, Schasfoort RBM, van den Berg A,. 2009. Single injection microarray-based biosensor kinetics. Anal. Methods 1: 162-169.
80. Krishnamoorthy G, Carlen ET, Kohlheyer D, Schasfoort RBM, van den Berg A,. 2009. Integrated electrokinetic sample focusing and surface plasmon resonance imaging system for measuring biomolecular interactions. Anal. Chem. 81: 1957-1963.
81. Landais E, Romagnoli PA, Corper AL, Shires J, Altman JD, Wilson IA, Garcia KC, Teyton L,. 2009. New design of MHC class II tetramers to accommodate fundamental principles of antigen presentation. J. Immunol. 183: 7949-7957.
82. Lee EF, Czabotar PE, Yang H, Sleebs BE, Lessene G, Colman PM, Smith BJ, Fairlie WD,. 2009. Conformational changes in Bcl-2 pro-survival proteins determine their capacity to bind ligands. J. Biol. Chem. 284: 30508-30517.
83. Lemercier G, Fernandez-Montalvan A, Shaw JP, Kugelstadt D, Bomke J, Domostoj M, Schwarz MK, Scheer A, Kappes B, Leroy D,. 2009. Identification and characterization of novel small molecules as potent inhibitors of the plasmodial calcium-dependent protein kinase 1. Biochemistry 48: 6379-6389.
84. Lempens EH, van Baal I, van Dongen JLJ, Hackeng TM, Merkx M, Meijer EW,. 2009. Noncovalent synthesis of protein dendrimers. Chemistry 15: 8760-8767.
85. Lempens EHM, Helms BA, Merkx M, Meijer EW,. 2009. Efficient and chemoselective surface immobilization of proteins by using aniline-catalyzed oxime chemistry. Chembiochem 10: 658-662.
86. Li S, Zheng W, KuoLee R, Hirama T, Henry M, Makvandi-Nejad S, Fjällman T, Chen W, Zhang J,. 2009. Pentabody-mediated antigen delivery induces antigen-specific mucosal immune response. Mol. Immunol. 46: 1718-1726.
87. Liao H-I, Olson CA, Hwang S, Deng H, Wong E, Baric RS, Roberts RW, Sun R,. 2009. mRNA display design of fibronectin-based intrabodies that detect and inhibit severe acute respiratory syndrome coronavirus nucleocapsid protein. J. Biol. Chem. 284: 17512-17520.
88. Lin Y-P, Greenwood A, Nicholson LK, Sharma Y, McDonough SP, Chang Y-F,. 2009. Fibronectin binds to and induces conformational change in a disordered region of leptospiral immunoglobulin-like protein B. J. Biol. Chem. 284: 23547-23557.
89. Liu CC, Choe H, Farzan M, Smider VV, Schultz PG,. 2009. Mutagenesis and evolution of sulfated antibodies using an expanded genetic code. Biochemistry 48: 8891-8898.
90. Liu L, Xu W,. 2009. Targeting nitric oxide mediated upregulation of membrane-bound glucose regulated-protein 78 by subtractive single chain variable rragment (scFv) phage display. Am. J. Biomed. Sci. 1: 321-335.
91. Liu L, Gao H, Li J, Dong Y, Liu N, Wan J, Liu W, Sun Y, Xu M,. 2009. Analysis of intestinal injuries induced by ricin in vitro using SPR technology and MS identification. Int. J. Mol. Sci. 10: 2431-2439.
92. Liu Y, Kuan C-T, Mi J, Zhang X, Clary BM, Bigner DD, Sullenger BA,. 2009. Aptamers selected against the unglycosylated EGFRvIII ectodomain and delivered intracellularly reduce membrane-bound EGFRvIII and induce apoptosis. Biol. Chem. 390: 137-144.
93. Lowry JA, Gamsjaeger R, Thong SY, Hung W, Kwan AH, Broitman-Maduro G, Matthews JM, Maduro M, Mackay JP,. 2009. Structural analysis of MED-1 reveals unexpected diversity in the mechanism of DNA recognition by GATA-type zinc finger domains. J. Biol. Chem. 284: 5827-5835.
94. Luo Y, Lu Z, Raso SW, Entrican C, Tangarone B,. 2009. Dimers and multimers of monoclonal IgGI exhibit higher in vitro binding affinities to Fcγ receptors. Mabs 1: 491-504.
95. Lupinek C, Roux KH, Laffer S, Rauter I, Reginald K, Kneidinger M, Blatt K, Ball T, Pree I, Jahn-Schmid B, Allam J-P, Novak N, Drescher A, Kricek F, Valent P, Englund H, Valenta R,. 2009. Trimolecular complex formation of IgE, FcεRI, and a recombinant nonanaphylactic single-chain antibody fragment with high affinity for IgE. J. Immunol. 182: 4817-4829.
96. Magotti P, Ricklin D, Qu H, Wu Y-Q, Kaznessis YN, Lambris JD,. 2009. Structure-kinetic relationship analysis of the therapeutic complement inhibitor compstatin. J. Mol. Recognit. 22: 495-505.
97. Mansfield R, Able S, Griffin P, Irvine B, James I, Macartney M, Miller K, Mills J, Napier C, Navratilova I, Perros M, Rickett G, Root H, van der Ryst E, Westby M, Dorr P,. 2009. CCR5 pharmacology methodologies and associated applications. Methods Enzymol. 460: 17-55.
98. Masson S, Kern T, Le Gouëllec A, Giustini C, Simorre J-P, Callow P, Vernet T, Gabel F, Zapun A,. 2009. Central domain of DivIB caps the C-terminal regions of the FtsL/DivIC coiled-coil rod. J. Biol. Chem. 284: 27687-27700.
99. Mattu M, Bendtsen C, Barbato G,. 2009. An indirect method to measure trimerization constants using surface plasmon resonance. Anal. Biochem. 393: 126-128.
100. Mester B, Manor R, Mor A, Arshava B, Rosen O, Ding F-X, Naider F, Anglister J,. 2009. HIV-1 peptide vaccine candidates: selecting constrained V3 peptides with highest affinity to antibody 447-52D. Biochemistry 48: 7867-7877.
101. Miller JR, Dunham S, Mochalkin I, Banotai C, Bowman M, Buist S, Dunkle B, Hanna D, Harwood HJ, Huband MD, Karnovsky A, Kuhn M, Limberakis C, Liu JY, Mehrens S, Mueller WT, Narasimhan L, Ogden A, Ohren J, Prasad JVNV, Shelly JA, Skerlos L, Sulavik M, Thomas VH, VanderRoest S, Wang L, Wang Z, Whitton A, Zhu T, Stover CK,. 2009. A class of selective antibacterials derived from a protein kinase inhibitor pharmacophore. Proc. Natl Acad. Sci. USA 106: 1737-1742.
102. Monfregola L, Vitale RM, Amodeo P, De Luca S,. 2009. A SPR strategy for high-throughput ligand screenings based on synthetic peptides mimicking a selected subdomain of the target protein: a proof of concept on HER2 receptor. Bioorg. Med. Chem. 17: 7015-7020.
103. Moore CD, Wu H, Bolaños B, Bergqvist S, Brooun A, Pauly T, Nowlin D,. 2009. Structural and biophysical characterization of XIAP BIR3 G306E mutant: insights in protein dynamics and application for fragment-based drug design. Chem. Biol. Drug Des. 74: 212-223.
104. Mori T, Itami S, Yanagi T, Tatara Y, Takamiya M, Uchida T,. 2009. Use of a real-time fluorescence monitoring system for high-throughput screening for prolyl isomerase inhibitors. J. Biomol. Screen. 14: 419-424.
105. Morrison BM, Lachey JL, Warsing LC, Ting BL, Pullen AE, Underwood KW, Kumar R, Sako D, Grinberg A, Wong V, Colantuoni E, Seehra JS, Wagner KR,. 2009. A soluble activin type IIB receptor improves function in a mouse model of amyotrophic lateral sclerosis. Exp. Neurol. 217: 258-268.
106. Muraoka S, Ito Y, Kamimura M, Baba M, Arima N, Suda Y, Hashiguchi S, Torikai M, Nakashima T, Sugimura K,. 2009. Effective induction of cell death on adult T-cell leukaemia cells by HLA-DRb-specific small antibody fragment isolated from human antibody phage library. J. Biochem. 145: 799-810.
107. Obungu VH, Gelfanova V, Rathnachalam R, Bailey A, Sloan-Lancaster J, Huang L,. 2009. Determination of the mechanism of action of anti-FasL antibody by epitope mapping and homology modeling. Biochemistry 48: 7251-7260.
108. Overgaard M, Borch J, Gerdes K,. 2009. RelB and RelE of Escherichia coli form a tight complex that represses transcription via the ribbon-helix-helix motif in RelB. J. Mol. Biol. 394: 183-196.
109. Padavattan S, Flicker S, Schirmer T, Madritsch C, Randow S, Reese G, Vieths S, Lupinek C, Ebner C, Valenta R, Markovic-Housley Z,. 2009. High-affinity IgE recognition of a conformational epitope of the major respiratory allergen Phl p 2 as revealed by X-ray crystallography. J. Immunol. 182: 2141-2151.
110. Peng LF, Stanton BZ, Maloof N, Wang X, Schreiber SL,. 2009. Syntheses of aminoalcohol-derived macrocycles leading to a small-molecule binder to and inhibitor of Sonic Hedgehog. Bioorg. Med. Chem. Lett. 19: 6319-6325.
111. Perspicace S, Banner D, Benz J, Müller F, Schlatter D, Huber W,. 2009. Fragment-based screening using surface plasmon resonance technology. J. Biomol. Screen. 14: 337-349.
112. Persson BD, Müller S, Reiter DM, Schmitt BBT, Marttila M, Sumowski CV, Schweizer S, Scheu U, Ochsenfeld C, Arnberg N, Stehle T,. 2009. An arginine switch in the species B adenovirus knob determines high-affinity engagement of cellular receptor CD46. J. Virol. 83: 673-686.
113. Pinto A, Bermudo Redondo MC, Ozalp VC, O'Sullivan CK,. 2009. Real-time apta-PCR for 20 000-fold improvement in detection limit. Mol. Biosyst. 5: 548-553.
114. Pollet J, Delport F, Janssen KPF, Jans K, Maes G, Pfeiffer H, Wevers M, Lammertyn J,. 2009. Fiber optic SPR biosensing of DNA hybridization and DNA-protein interactions. Biosens. Bioelectron. 25: 864-869.
115. Pope ME, Soste MV, Eyford BA, Anderson NL, Pearson TW,. 2009. Anti-peptide antibody screening: selection of high affinity monoclonal reagents by a refined surface plasmon resonance technique. J. Immunol. Methods 341: 86-96.
116. Potty ASR, Kourentzi K, Fang H, Jackson GW, Zhang X, Legge GB, Willson RC,. 2009. Biophysical characterization of DNA aptamer interactions with vascular endothelial growth factor. Biopolymers 91: 145-156.
117. Radi M, Maga G, Alongi M, Angeli L, Samuele A, Zanoli S, Bellucci L, Tafi A, Casaluce G, Giorgi G, Armand-Ugon M, Gonzalez E, Esté JA, Baltzinger M, Bec G, Dumas P, Ennifar E, Botta M,. 2009. Discovery of chiral cyclopropyl dihydro-alkylthio-benzyl-oxopyrimidine (S-DABO) derivatives as potent HIV-1 reverse transcriptase inhibitors with high activity against clinically relevant mutants. J. Med. Chem. 52: 840-851.
118. Rajagopalan R, Misialck S, Stevens SK, Myszka DG, Brandhuber BJ, Ballard JA, Andrews SW, Seiwert SD, Kossen K,. 2009. Inhibition and binding kinetics of the hepatitis C virus NS3 protease inhibitor ITMN-191 reveals tight binding and slow dissociative behavior. Biochemistry 48: 2559-2568.
119. Rajamanonmani R, Nkenfou C, Clancy P, Yau YH, Shochat SG, Sukupolvi-Petty S, Schul W, Diamond MS, Vasudevan SG, Lescar J,. 2009. On a mouse monoclonal antibody that neutralizes all four dengue virus serotypes. J. Gen. Virol. 90: 799-809.
120. Ramakrishnan M, Kandimalla KK, Wengenack TM, Howell KG, Poduslo JF,. 2009. Surface plasmon resonance binding kinetics of Alzheimer's disease amyloid β peptide-capturing and plaque-binding monoclonal antibodies. Biochemistry 48: 10405-10415.
121. Rice AE, Mendez MJ, Hokanson CA, Rees DC, Björkman PJ., 2009. Investigation of the biophysical and cell biological properties of ferroportin, a multipass integral membrane protein iron exporter. J. Mol. Biol. 386: 717-732.
122. Rich RL, Papalia GA, Flynn PJ, Furneisen J, Quinn J, Klein JS, Katsamba PS, Waddell BM, Scott M, Thompson J, Berlier J, Corry S, Baltzinger M, Zeder-Lutz G, Schoenemann A, Clabbers A, Wieckowski S, Murphy MM, Page P, Ryan TE, Duffner J, Ganguly T, Corbin J, Gautam S, Anderluh G, Bavdek A, Reichmann D, Yadav SP, Hommema E, Pol E, Drake A, Klakamp S, Chapman T, Kernaghan D, Miller K, Schuman J, Lindquist K, Herlihy K, Murphy MB, Bohnsack R, Andrien B, Brandani P, Terwey D, Millican R, Darling RJ, Wang L, Carter Q, Dotzlaf J, Lopez-Sagaseta J, Campbell I, Torreri P, Hoos S, England P, Liu Y, Abdiche Y, Malashock D, Pinkerton A, Wong M, Lafer E, Hinck C, Thompson K, Di Primo C, Joyce A, Brooks J, Torta F, Bagge Hagel AB, Krarup J, Pass J, Ferreira M, Shikov S, Mikolajczyk M, Abe Y, Barbato G, Giannetti AM, Krishnamoorthy G, Beusink B, Satpaev D, Tsang T, Fang E, Partridge J, Brohawn S, Horn J, Pritsch O, Obal G, Nilapwar S, Busby B, Gutierrez-Sanchez G, Das Gupta R, Canepa S, Witte K, Nikolovska-Coleska Z, Cho YH, D'Agata R, Schlick K, Calvert R, Munoz EM, Hernaiz MJ, Bravman T, Dines M, Yang M-H, Puskas A, Boni E, Li R, Wear M, Grinberg A, Baardsnes J, Dolezal O, Gainey M, Anderson H, Peng J, Lewis M, Spies P, Trinh Q, Bibikov S, Raymond J, Yousef M, Chandrasekaran V, Feng Y, Emerick A, Mundodo S, Guimaraes R, McGirr K, Li Y-J, Hughes H, Mantz H, Skrabana R, Witmer M, Ballard J, Martin L, Skladal P, Korza G, Laird-Offringa I, Lee CS, Khadir A, Podlaski F, Neuner P, Rothacker J, Rafique A, Dankbar N, Kainz P, Gedig E, Vuyisich M, Boozer C, Ly N, Toews M, Uren A, Kalyuzhniy O, Lewis K, Chomey E, Pak B, Myszka DG,. 2009. A global benchmark study using affinity-based biosensors. Anal. Biochem. 386: 194-216.
123. Ricklin D, Tzekou A, Garcia BL, Hammel M, McWhorter WJ, Sfyroera G, Wu Y-Q, Holers VM, Herbert AP, Barlow PN, Geisbrecht BV, Lambris JD,. 2009. A molecular insight into complement evasion by the staphylococcal complement inhibitor protein family. J. Immunol. 183: 2565-2574.
124. O ATPase. Biochim. Biophys. Acta 1787: 242-251.
125. Rosenfeld R, Marcus H, Ben-Arie E, Lachmi B-E, Mechaly A, Reuveny S, Gat O, Mazor O, Ordentlich A,. 2009. Isolation and chimerization of a highly neutralizing antibody conferring passive protection against lethal Bacillus anthracis infection. PLoS ONE 4: e6351.
126. Ruiz-Perez F, Henderson IR, Leyton DL, Rossiter AE, Zhang Y, Nataro JP,. 2009. Roles of periplasmic chaperone proteins in the biogenesis of serine protease autotransporters of Enterobacteriaceae. J. Bacteriol. 191: 6571-6583.
127. Sakamoto K, Ito Y, Hatanaka T, Soni PB, Mori T, Sugimura K,. 2009. Discovery and characterization of a peptide motif that specifically recognizes a non-native conformation of human IgG induced by acidic pH conditions. J. Biol. Chem. 284: 9986-9993.
128. Sakamoto S, Caaveiro JMM, Sano E, Tanaka Y, Kudou M, Tsumoto K,. 2009. Contributions of interfacial residues of human Interleukin15 to the specificity and affinity for its private α-receptor. J. Mol. Biol. 389: 880-894.
129. p2, a new type of single-stranded DNA binding protein. Mol. Microbiol. 73: 1156-1170.
130. Scheid JF, Mouquet H, Feldhahn N, Seaman MS, Velinzon K, Pietzsch J, Ott RG, Anthony RM, Zebroski H, Hurley A, Phogat A, Chakrabarti B, Li Y, Connors M, Pereyra F, Walker BD, Wardemann H, Ho D, Wyatt RT, Mascola JR, Ravetch JV, Nussenzweig MC,. 2009. Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals. Nature 458: 636-640.
131. Schneider MC, Prosser BE, Caesar JJE, Kugelberg E, Li S, Zhang Q, Quoraishi S, Lovett JE, Deane JE, Sim RB, Roversi P, Johnson S, Tang CM, Lea SM,. 2009. Neisseria meningitidis recruits factor H using protein mimicry of host carbohydrates. Nature 458: 890-893.
132. Schönfeld D, Matschiner G, Chatwell L, Trentmann S, Gille H, Hülsmeyer M, Brown N, Kaye PM, Schlehuber S, Hohlbaum A,. 2009. An engineered lipocalin specific for CTLA-4 reveals a combining site with structural and conformational features similar to antibodies. Proc. Nat Acad. Sci. 106: 8198-8203.
133. Shih P-C, Yang M-S, Lin S-C, Ho Y, Hsiao J-C, Wang D-R, Yu SS-F, Chang W, Tzou D-LM,. 2009. A turn-like structure "KKPE" segment mediates the specific binding of viral protein A27 to heparin and heparan sulfate on cell surfaces. J. Biol. Chem. 284: 36535-36546.
134. Solowiej J, Bergqvist S, McTigue MA, Marrone T, Quenzer T, Cobbs M, Ryan K, Kania RS, Diehl W, Murray BW,. 2009. Characterizing the effects of the juxtamembrane domain on vascular endothelial growth factor receptor-2 enzymatic activity, autophosphorylation, and inhibition by axitinib. Biochemistry 48: 7019-7031.
135. Stewart JA, Campbell JL, Bambara RA,. 2009. Significance of the dissociation of Dna2 by flap endonuclease 1 to Okazaki fragment processing in Saccharomyces cerevisiae. J. Biol. Chem. 284: 8283-8291.
136. 13 with significant conformational rearrangements in the interface. J. Biol. Chem. 284: 5000-5009.
137. Tang X, Narayanan S, Peruzzi G, Apara A, Natarajan K, Margulies DH, Coligan JE, Borrego F,. 2009. A single residue, arginine 65, is critical for the functional interaction of leukocyte-associated inhibitory receptor-1 with collagens. J. Immunol. 182: 5446-5452.
138. Taylor AI, Beavil RL, Sutton BJ, Calvert RA,. 2009. A monomeric chicken IgY receptor binds IgY with 2:1 stoichiometry. J. Biol. Chem. 284: 24168-24175.
139. Tran TA, Rosik D, Abrahmsén L, Sandström M, Sjöberg A, WÃllberg H, Ahlgren S, Orlova A, Tolmachev V,. 2009. Design, synthesis and biological evaluation of a multifunctional HER2-specific affibody molecule for molecular imaging. Eur. J. Nucl. Med. Mol. Imaging 36: 1864-1873.
140. Teotico DG, Babaoglu K, Rocklin GJ, Ferreira RS, Giannetti AM, Shoichet BK,. 2009. Docking for fragment inhibitors of AmpC β-lactamase. Proc. Natl Acad. Sci. 106: 7455-7460.
141. Tubbs J, Latypov V, Kanugula S, Butt A, Melikishvili M, Kraehenbuehl R, Fleck O, Marriott A, Watson AJ, Verbeek B, McGown G, Thorncroft M, Santibanez-Koref MF, Millington C, Arvai AS, Kroeger MD, Peterson LA, Williams DM, Fried MG, Margison GP, Pegg AE, Tainer JA,. 2009. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 459: 808-813.
142. Vanderpool D, Johnson TO, Ping C, Bergqvist S, Alton G, Phonephaly S, Rui E, Luo C, Deng Y-L, Grant S, Quenzer T, Margosiak S, Register J, Brown E, Ermolieff J,. 2009. Characterization of the CHK1 allosteric inhibitor binding site. Biochemistry 48: 9823-9830.
143. Waldron TT, Springer TA,. 2009. Transmission of allostery through the lectin domain in selectin-mediated cell adhesion. Proc. Natl Acad. Sci. USA 106: 85-90.
144. Watanabe H, Matsumaru H, Ooishi A, Feng Y, Odahara T, Suto K, Honda S,. 2009. Optimizing pH response of affinity between protein G and IgG Fc. J. Biol. Chem. 284: 12373-12383.
145. Wojciak JM, Zhu N, Schuerenberg KT, Moreno K, Shestowsky WS, Hiraiwa M, Sabbadini R, Huxford T,. 2009. The crystal structure of sphingosine-1-phosphate in complex with a Fab fragment reveals metal bridging of an antibody and its antigen. Proc. Natl Acad. Sci. USA 106: 17717-17722.
146. Yakovlev S, Medved L,. 2009. Interaction of fibrin(ogen) with the endothelial cell receptor VE-cadherin: localization of the fibrin-binding site within the third extracellular VE-cadherin domain. Biochemistry 48: 5171-5179.
147. Yamamoto K, Taniai M, Torigoe K, Yamamoto S, Arai N, Suemoto Y, Yoshida K, Okura T, Mori T, Fujioka N, Tanimoto T, Miyata M, Ariyasu H, Ushio C, Fujii M, Ariyasu T, Ikeda M, Ohta T, Kurimoto M, Fukuda S,. 2009. Creation of interferon-α8 mutants with amino acid substitutions against interferon-α receptor-2 binding sites using phage display system and evaluation of their biologic properties. J. Interferon Cytokine Res. 29: 161-170.
148. Yosef E, Politi R, Choi MH, Shifman JM,. 2009. Computational design of calmodulin mutants with up to 900-fold increase in binding specificity. J. Mol. Biol. 385: 1470-1480.
149. Zandian M, Jungbauer A,. 2009. Engineering properties of a camelid antibody affinity sorbent for Immunoglobulin G purification. J. Chromatog. A 1216: 5548-5556.
150. Zielinski R, Lyakhov I, Jacobs A, Chertov O, Kramer-Marek G, Francella N, Stephen A, Fisher R, Blumenthal R, Capala J,. 2009. Affitoxin-a novel recombinant, HER2-specific, anticancer agent for targeted therapy of HER2-positive tumors. J. Immunother. 32: 817-825.
151. Bajorek M, Schubert HL, McCullough J, Langelier C, Eckert DM, Stubblefield W-MB, Uter NT, Myszka DG, Hill CP, Sundquist WI,. 2009. Structural basis for ESCRT-III protein autoinhibition. Nat. Struct. Mol. Biol. 16: 754-762.
152. Bishop B, Aricescu AR, Harlos K, O'Callaghan CA, Jones EY, Siebold C,. 2009. Structural insights into hedgehog ligand sequestration by the human hedgehog-interacting protein HHIP. Nat. Struct. Mol. Biol. 16: 698-703.
153. Chen Y-X, Zhao L, Huang Z-P, Zhao Y-F, Li Y-M,. 2009. Facile synthesis of cyclopeptide-centered multivalent glycoclusters with 'click chemistry' and molecular recognition study by surface plasmon resonance. Bioorg. Med. Chem. Lett. 19: 3775-3778.
154. Cheng H, Li J, Fazlieva R, Dai Z, Bu Z, Roder H,. 2009. Autoinhibitory interactions between the PDZ2 and C-terminal domains in the scaffolding protein NHERF1. Structure 17: 660-669.
155. 2+ and phosphocholine interactions with C-reactive protein using a surface plasmon resonance biosensor. Anal. Biochem. 391: 39-44.
156. Cochran S, Li CP, Ferro V,. 2009. A surface plasmon resonance-based solution affinity assay for heparan sulfate-binding proteins. Glycoconj. J. 26: 577-587.
157. Glass LS, Nguyen B, Goodwin KD, Dardonville C, Wilson WD, Long EC, Georgiadis MM,. 2009. Crystal structure of a trypanocidal 4,4'- bis(imidazolinylamino)diphenylamine bound to DNA. Biochemistry 48: 5943-5952.
158. Himmel DM, Maegley KA, Pauly TA, Bauman JD, Das K, Dharia C, Clark Jr AD, Ryan K, Hickey MJ, Love RA, Hughes SH, Bergqvist S, Arnold E,. 2009. Structure of HIV-1 reverse transcriptase with the inhibitor β-thujaplicinol bound at the RNase H active site. Structure 17: 1625-1635.
159. Hindie V, Stroba A, Zhang H, Lopez-Garcia LA, Idrissova L, Zeuzem S, Hirschberg D, Schaeffer F, Jørgensen TJD, Engel M, Alzari PM, Biondi RM,. 2009. Structure and allosteric effects of low-molecular-weight activators on the protein kinase PDK1. Nat. Chem. Biol. 5: 758-764.
160. Hjerpe R, Aillet F, Lopitz-Otsoa F, Lang V, England P, Rodriguez MS,. 2009. Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities. EMBO Rep. 10: 1250-1258.
161. Isabet T, Montagnac G, Regazzoni K, Raynal B, El Khadali F, England P, Franco M, Chavrier P, Houdusse A, Ménétrey J,. 2009. The structural basis of Arf effector specificity: the crystal structure of ARF6 in a complex with JIP4. EMBO J. 28: 2835-2845.
162. Jackrel ME, Valverde R, Regan L,. 2009. Redesign of a protein-peptide interaction: characterization and applications. Protein Sci. 18: 762-774.
163. Kajander T, Sachs JN, Goldman A, Regan L,. 2009. Electrostatic interactions of Hsp-organizing protein tetratricopeptide domains with Hsp70 and Hsp90. J. Biol. Chem. 284: 25364-25374.
164. Krisinger MJ, Guo LJ, Salvagno GL, Guidi GC, Lippi G, Dahlbäck B,. 2009. Mouse recombinant protein C variants with enhanced membrane affinity and hyper-anticoagulant activity in mouse plasma. FEBS J. 276: 6586-6602.
165. Li X, Lu C, Stewart M, Xu H, Strong RK, Igumenova T, Li P,. 2009. Structural basis of double-stranded RNA recognition by the RIG-I like receptor MDA5. Arch. Biochem. Biophys. 488: 23-33.
166. Macdonald WA, Chen Z, Gras S, Archbold JK, Tynan FE, Clements CS, Bharadwaj M, Kjer-Nielsen L, Saunders PM, Wilce MCJ, Crawford F, Stadinsky B, Jackson D, Brooks AG, Purcell AW, Kappler JW, Burrows SR, Rossjohn J, McCluskey J,. 2009. T cell allorecognition via molecular mimicry. Immunity 31: 897-908.
167. Marteijn JA, van der Meer LT, Smit JJ, Noordermeer SM, Wissink W, Jansen P, Swarts HG, Hibbert RG, De Witte T, Sixma T, Jansen JH, van der Reijden BA,. 2009. The ubiquitin ligase Triad1 inhibits myelopoiesis through UbcH7 and Ubc13 interacting domains. Leukemia 23: 1480-1489.
168. Mendoza V, Vilchis-Landeros MM, Mendoza-Hernández G, Huang T, Villarreal MM, Hinck AP, Lopez-Casillas F, Montiel J-L,. 2009. Betaglycan has two independent domains required for high affinity TGF-β binding: proteolytic cleavage separates the domains and inactivates the neutralizing activity of the soluble receptor. Biochemistry 48: 11755-11765.
169. Mihrshahi R, Barclay AN, Brown MH,. 2009. Essential roles for Dok2 and RasGAP in CD200 receptor-mediated regulation of human myeloid cells. J. Immunol. 183: 4879-4886.
170. Nguyen B, Wilson WD,. 2009. The effects of hairpin loops on ligand-DNA interactions. J. Phys. Chem. B 113: 14329-14335.
171. Östlund C, Folker ES, Choi JC, Gomes ER, Gundersen GG, Worman HJ,. 2009. Dynamics and molecular interactions of linker of nucleoskeleton and cytoskeleton (LINC) complex proteins. J. Cell Sci. 122: 4099-4108.
172. Pellicci DG, Patel O, Kjer-Nielsen L, Pang SS, Sullivan LC, Kyparissoudis K, Brooks AG, Reid HH, Gras S, Lucet IS, Koh R, Smyth MJ, Mallevaey T, Matsuda JL, Gapin L, McCluskey J, Godfrey DI, Rossjohn J,. 2009. Differential recognition of CD1d-α-galactosyl ceramide by the Vβ8.2 and Vβ7 semi-invariant NKT T cell receptors. Immunity 31: 47-59.
173. Phillip Y, Sherman E, Haran G, Schreiber G,. 2009. Common crowding agents have only a small effect on protein-protein interactions. Biophys. J. 97: 875-885.
174. Pioszak AA, Parker NR, Gardella TJ, Xu HE,. 2009. Structural basis for parathyroid hormone-related protein binding to the parathyroid hormone receptor and design of conformation-selective peptides. J. Biol. Chem. 284: 28382-28391.
175. Ramsden NL, Buetow L, Dawson A, Kemp LA, Ulaganathan V, Brenk R, Klebe G, Hunter WN,. 2009. A structure-based approach to ligand discovery for 2 C-methyl-d-erythritol-2,4-cyclodiphosphate synthase: a target for antimicrobial therapy. J. Med. Chem. 52: 2531-2542.
176. Roda O, Ortiz-Zapater E, Martínez-Bosch N, Gutiérrez- Gallego R, Vila-Perellõ M, Ampurdanés C, Gabius H-J, André S, Andreu D, Real FX, Navarro P,. 2009. Galectin-1 is a novel functional receptor for tissue plasminogen activator in pancreatic cancer. Gastroenterology 136: 1379-1390.
177. Sasaki K, Kajikawa M, Kuroki K, Motohashi T, Shimojima T, Park EY, Kondo S, Yagi H, Kato K, Maenaka K,. 2009. Silkworm expression and sugar profiling of human immune cell surface receptor, KIR2DL1. Biochem. Biophys. Res. Commun. 387: 575-580.
178. Schlapschy M, Fogarasi M, Gruber H, Gresch O, Schafer C, Aguib Y, Skerra A,. 2009. Functional humanization of an anti-CD16 Fab fragment: obstacles of switching from murine λ to human λ or κ light chains. Prot. Eng. Des. Sel. 22: 175-188.
179. Schwardt O, Gäthje H, Vedani A, Mesch S, Gao G-P, Spreafico M, von Orelli J, Kelm S, Ernst B,. 2009. Examination of the biological role of the α(2 → 6)-linked sialic acid in gangliosides binding to the myelin-associated glycoprotein (MAG). J. Med. Chem. 52: 989-1004.
180. Sharif O, Hu H, Klock H, Hampton EN, Nigoghossian E, Knuth MW, Matzen J, Anderson P, Trager R, Uno T, Glynne RJ, Azarian SM, Caldwel JS, Brinker A,. 2009. Time-resolved fluorescence resonance energy transfer and surface plasmon resonance-based assays for retinoid and transthyretin binding to retinol-binding protein 4. Anal. Biochem. 392: 162-168.
181. Stanton BZ, Peng LP, Maloof N, Nakai K, Wang X, Duffner JL, Taveras KM, Hyman JM, Lee SW, Koehler AN, Chen JK, Fox JL, Mandinova A, Schreiber SL,. 2009. A small molecule that binds Hedgehog and blocks its signaling in human cells. Nat. Chem. Biol. 5: 154-156.
182. Westrate L, Mackay H, Brown T, Nguyen B, Kluza J, Wilson WD, Lee M, Hartley JA,. 2009. Effects of the N-terminal acylamido group of imidazole-and pyrrole-containing polyamides on DNA sequence specificity and binding affinity. Biochemistry 48: 5679-5688.
183. Xu X, Kasembeli MM, Jiang X, Tweardy BJ, Tweardy DJ,. 2009. Chemical probes that competitively and selectively inhibit Stat3 activation. PLoS ONE 4: e4783.
184. Yin Q, Lin S-C, Lamothe B, Lu M, Lo Y-C, Hura G, Zheng L, Rich RL, Campos AD, Myszka DG, Lenardo MJ, Darnay BG, Wu H,. 2009. E2 interaction and dimerization in the crystal structure of TRAF6. Nat. Struct. Mol. Biol. 16: 658-665.
185. Zhang Z, Majava V, Greffier A, Hayes RL, Kursula P, Wang KKW,. 2009. Collapsin response mediator protein-2 is a calmodulin-binding protein. Cell. Mol. Life Sci. 66: 526-536.
186. Zhuang M, Calabrese MF, Liu J, Waddell MB, Nourse A, Hammel M, Miller DJ, Walden H, Duda DM, Seyedin SN, Hoggard T, Harper JW, White KP, Schulman BA,. 2009. Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol. Cell 36: 39-50.
187. Bertinetti D, Schweinsberg S, Hanke SE, Schwede F, Bertinetti O, Drewianka S, Genieser HG, Herberg FW,. 2009. Chemical tools selectively target components of the PKA system. BMC Chem. Biol 9: 3.
188. Bremer MGEG, Smits NGE, Haasnoot W,. 2009. Biosensor immunoassay for traces of hazelnut protein in olive oil. Anal. Bioanal. Chem. 395: 119-126.
189. Indyk HE,. 2009. Development and application of an optical biosensor immunoassay for α-lactalbumin in bovine milk. Int. Dairy J. 19: 36-42.
190. Marchesini GR, Hooijerink H, Haasnoot W, Buijs J, Campbell K, Elliott CT, Nielen MWF,. 2009. Towards surface plasmon resonance biosensing combined with bioaffinity-assisted nano HILIC liquid chromatography time-of-flight mass spectrometry identification of paralytic shellfish poisons. TRAC Trends Anal. Chem. 28: 792-803.
191. Nagatomo K, Kawaguchi T, Miura N, Toko K, Matsumoto K,. 2009. Development of a sensitive surface plasmon resonance immunosensor for detection of 2,4-dinitrotoluene with a novel oligo (ethylene glycol)-based sensor surface. Talanta 79: 1142-1148.
192. Ou HC, Luo ZF, Jiang H, Zhou HM, Wang XP, Song CX,. 2009. Indirect inhibitive immunoassay for estradiol using surface plasmon resonance coupled to online in-tube SPME. Anal. Lett. 42: 2758-2773.
193. Persson S,. 2009. Calibration free analysis to measure the concentration of active proteins. Biosci. Technol. 32: 14-18.
194. Rebe Raz S, Bremer MGEG, Haasnoot W, Norde W,. 2009. Label-free and multiplex detection of antibiotic residues in milk using imaging surface plasmon resonance-based immunosensor. Anal. Chem. 81: 7743-7749.
195. Smith JP, Martin A, Sammons DL, Striley C, Biagini R, Quinn J, Cope R, Snawder JE,. 2009. Measurement of methamphetamine on surfaces using surface plasmon resonance. Toxicol. Mech. Methods 19: 416-421.
196. Stapleton S, Bradshaw B, O'Kennedy R,. 2009. Development of a surface plasmon resonance-based assay for the detection of Corynebacterium pseudotuberculosis infection in sheep. Anal. Chim. Acta 651: 98-104.
197. Treviño J, Calle A, Rodríguez-Frade JM, Mellado M, Lechuga LM,. 2009. Surface plasmon resonance immunoassay analysis of pituitary hormones in urine and serum samples. Clin. Chim. Acta 403: 56-62.
198. Treviño J, Calle A, Rodríguez-Frade JM, Mellado M, Lechuga LM,. 2009. Determination of human growth hormone in human serum samples by surface plasmon resonance immunoassay. Talanta 78: 1011-1016.
199. Yuan J, Addo J, Aguilar M-I, Wu Y,. 2009. Surface plasmon resonance assay for chloramphenicol without surface regeneration. Anal. Biochem. 390: 97-99.
200. Abdiche YN, Malashock DS, Pinkerton A, Pons J,. 2009. Exploring blocking assays using Octet, ProteOn, and Biacore biosensors. Anal. Biochem. 386: 172-180.
201. Alejo A, Saraiva M, Ruiz-Argüello MB, Viejo-Borbolla A, De Marco MF, Salguero FJ, Alcami A,. 2009. A method for the generation of Ectromelia virus (ECTV) recombinants: in vivo analysis of ECTV vCD30 deletion mutants. PLoS ONE 4: e5175.
202. Ansar W, Mukhopadhyay S, Habib SKH, Basu S, Saha B, Sen AK, Mandal CC, Mandal C,. 2009. Disease-associated glycosylated molecular variants of human C-reactive protein activate complement-mediated hemolysis of erythrocytes in tuberculosis and Indian visceral leishmaniasis. Glycoconj. J. 26: 1151-1169.
203. Aref A, Horvath R, McColl J, Ramsden JJ,. 2009. Optical monitoring of stem cell-substratum interactions. J. Biomed. Opt. 14: 010501-1-010501-3.
204. Arif A, Jia J, Mukhopadhyay R, Willard B, Kinter M, Fox PL,. 2009. Two-site phosphorylation of EPRS coordinates multimodal regulation of noncanonical translational control activity. Mol. Cell 35: 164-180.
205. Bailey SE, Hayes F,. 2009. Influence of operator site geometry on transcriptional control by the YefM-YoeB toxin-antitoxin complex. J. Bacteriol. 191: 762-772.
206. Bernard A, Gao-Li J, Franco C-A, Bouceba T, Huet A, Li Z,. 2009. Laminin receptor involvement in the anti-angiogenic activity of pigment epithelium-derived factor. J. Biol. Chem. 284: 10480-10490.
207. Berry LM, Adams R, Airey M, Bracher MG, Bourne T, Carrington B, Cross AS, Davies GCG, Finney HM, Foulkes R, Gozzard N, Griffin RA, Hailu H, Lamour SD, Lawson AD, Lightwood DJ, McKnight AJ, O'Dowd VL, Oxbrow AKF, Popplewell AG, Shaw S, Stephens PE, Sweeney B, Tomlinson KL, Uhe C, Palframan RT,. 2009. In vitro and in vivo characterisation of anti-murine IL-13 antibodies recognising distinct functional epitopes. Int. Immunopharmacol. 9: 201-206.
208. Bian Y, Masuda A, Matsuura T, Ito M, Okushin K, Engel AG, Ohno K,. 2009. Tannic acid facilitates expression of the polypyrimidine tract binding protein and alleviates deleterious inclusion of CHRNA1 exon P3A due to an hnRNP H-disrupting mutation in congenital myasthenic syndrome. Hum. Mol. Genet. 18: 1229-1237.
209. Boesze-Battaglia K, Brown A, Walker L, Besack D, Zekavat A, Wrenn S, Krummenacher C, Shenker BJ,. 2009. Cytolethal distending toxin-induced cell cycle arrest of lymphocytes is dependent upon recognition and binding to cholesterol. J. Biol. Chem. 284: 10650-10658.
210. Brandt CS, Baratin M, Yi EC, Kennedy J, Gao Z, Fox B, Haldeman B, Ostrander CD, Kaifu T, Chabannon C, Moretta A, West R, Xu W, Vivier E, Levin SD,. 2009. The B7 family member B7-H6 is a tumor cell ligand for the activating natural killer cell receptor NKp30 in humans. J. Exp. Med. 206: 1495-1503.
211. Buehler PW, Abraham B, Vallelian F, Linnemayr C, Pereira CP, Cipollo JF, Jia Y, Mikolajczyk M, Boretti FS, Schoedon G, Alayash AI, Schaer DJ,. 2009. Haptoglobin preserves the CD163 hemoglobin scavenger pathway by shielding hemoglobin from peroxidative modification. Blood 113: 2578-2586.
212. Bulankina AV, Deggerich A, Wenzel D, Mutenda K, Wittmann JG, Rudolph MG, Burger KNJ, Höning S,. 2009. TIP47 functions in the biogenesis of lipid droplets. J. Cell Biol. 185: 641-655.
213. Carrara S, Cavallini A, Leblebici Y, De Micheli G, Bhalla V, Valle F, Samorì B, Benini L, Riccò B, Vikholm-Lundin I, Munter T,. 2009. New probe immobilizations by lipoate-diethalonamines or ethylene-glycol molecules for capacitance DNA chip. Adv. Sensors Interfaces 3: 9-14.
214. Castrec B, Rouillon C, Henneke G, Flament D, Querellou J, Raffin J-P,. 2009. Binding to PCNA in euryarchaeal DNA replication requires two PIP motifs for DNA polymerase D and one PIP motif for DNA polymerase B. J. Mol. Biol. 394: 209-218.
215. Charvolin D, Perez J-B, Rouvière F, Giusti F, Bazzacco P, Abdine A, Rappaport F, Martinez KL, Popot J-L,. 2009. The use of amphipols as universal molecular adapters to immobilize membrane proteins onto solid supports. Proc. Natl Acad. Sci. USA 106: 405-410.
216. Chiron D, Pellat-Deceunynck C, Maillasson M, Bataille R, Jego G,. 2009. Phosphorothioate-modified TLR9 ligands protect cancer cells against TRAIL-induced apoptosis. J. Immunol. 183: 4371-4377.
217. Choi S, Chae J,. 2009. Surface plasmon resonance biosensor based on Vroman effect: towards cancer biomarker detection. Mixed-Signals, Sensors, Systems 15: 1-3.
218. Cormier A, Clément M-J, Knossow M, Lachkar S, Savarin P, Toma F, Sobel A, Gigant B, Curmi PA,. 2009. The PN2-3 domain of centrosomal P4.1-associated protein implements a novel mechanism for tubulin sequestration. J. Biol. Chem. 284: 6909-6917.
219. Dexheimer TS, Gediya LK, Stephen AG, Weidlich I, Antony S, Marchand C, Interthal H, Nicklaus M, Fisher RJ, Njar VC, Pommier Y,. 2009. 4-pregnen-21-ol-3,20-dione-21-(4-bromobenzenesulfonate) (NSC 88915) and related novel steroid derivatives as tyrosyl-DNA phosphodiesterase (Tdp1) inhibitors. J. Med. Chem. 52: 7122-31.
220. Dhayal M, Ratner DM,. 2009. XPS and SPR analysis of glycoarray surface density. Langmuir 25: 2181-2187.
221. Di Fede G, Catania M, Morbin M, Rossi G, Suardi S, Mazzoleni G, Merlin M, Giovagnoli AR, Prioni S, Erbetta A, Falcone C, Gobbi M, Colombo L, Bastone A, Beeg M, Manzoni C, Francesucci B, Spagnoli A, Cantù L, Del Favero E, Levy E, Salmona M, Tagliavini F,. 2009. A recessive mutation in the APP gene with dominant-negative effect on amyloidogenesis. Science 323: 1473-1477.
222. Douat-Casassus C, Chassaing S, Di Primo C, Quideau S,. 2009. Specific or nonspecific protein-polyphenol interactions? Discrimination in real time by surface plasmon resonance. Chembiochem 10: 2321-2324.
223. Duus K, Sandhu N, Jørgensen CS, Hansen PR, Steinø A, Thaysen-Andersen M, Højrup P, Houen G,. 2009. Interaction of the chaperone calreticulin with proteins and peptides of different structural classes. Prot. Pept. Lett. 16: 1414-1423.
224. Faye C, Chautard E, Olsen BR, Ricard-Blum S,. 2009. The first draft of the endostatin interaction network. J. Biol. Chem. 284: 22041-22047.
225. Ferner-Ortner-Bleckmann J, Huber-Gries C, Pavkov T, Keller W, Mader C, Ilk N, Sleytr UB, Egelseer EM,. 2009. The high-molecular-mass amylase (HMMA) of Geobacillus stearothermophilus ATCC 12980 interacts with the cell wall components by virtue of three specific binding regions. Mol. Microbiol. 72: 1448-1461.
226. Fujisawa D, Yamazaki Y, Morita T,. 2009. Re-evaluation of M-LAO, l-amino acid oxidase, from the venom of Gloydius blomhoffi as an anticoagulant protein. J. Biochem. 146: 43-49.
227. EcfG signalling cascade is involved in stress response and symbiotic efficiency in Bradyrhizobium japonicum. Mol. Microbiol. 73: 291-305.
228. Hainzl O, Lapina MC, Buchner J, Richter K,. 2009. The charged linker region is an important regulator of Hsp90 function. J. Biol. Chem. 284: 22559-22567.
229. Hayashi G, Hagihara M, Nakatani K,. 2009. RNA aptamers that reversibly bind photoresponsive azobenzene-containing peptides. Chemistry 15: 424-432.
230. Heeres JT, Kim S-H, Leslie BJ, Lidstone EA, Cunningham BT, Hergenrother PJ,. 2009. Identifying modulators of protein-protein interactions using photonic crystal biosensors. J. Am. Chem. Soc. 131: 18202-18203.
231. Helleboid-Chapman A, Nowak M, Helleboid S, Moitrot E, Rommens C, Dehondt H, Héliot L, Drobecq H, Fruchart-Najib J, Fruchart J,. 2009. Apolipoprotein AV modulates insulin secretion in pancreatic β-cells through its interaction with midkine. Cell. Physiol. Biochem. 24: 451-460.
232. Katsamba P, Carroll K, Ahlsena G, Bahna F, Vendome J, Posy S, Rajebhosale M, Price S, Jessell TM, Ben-Shaul A, Shapiro L, Honig BH,. 2009. Linking molecular affinity and cellular specificity in cadherin-mediated adhesion. Proc. Natl Acad. Sci. USA 106: 11594-11599.
233. Kausaite-Minkstimiene A, Ramanaviciene A, Ramanavicius A,. 2009. Surface plasmon resonance biosensor for direct detection of antibodies against human growth hormone. Analyst 134: 2051-2057.
234. Kim ST, Takeuchi K, Sun Z-YJ, Touma M, Castro CE, Fahmy A, Lang MJ, Wagner G, Reinherz EL,. 2009. The αβ T cell receptor is an anisotropic mechanosensor. J. Biol. Chem. 284: 31028-31037.
235. Kofuku Y, Yoshiura C, Ueda T, Terasawa H, Hirai T, Tominaga S, Hirose M, Maeda Y, Takahashi H, Terashima Y, Matsushima K, Shimada I,. 2009. Structural basis of the interaction between chemokine stromal cell-derived factor-1/CXCL12 and its G-protein-coupled receptor CXCR4. J. Biol. Chem. 284: 35240-35250.
236. Laitem C, Leprivier G, Choul-Li S, Begue A, Monte D, Larsimont D, Dumont P, Duterque-Coquillaud M, Aumercier M,. 2009. Ets-1 p27: a novel Ets-1 isoform with dominant-negative effects on the transcriptional properties and the subcellular localization of Ets-1 p51. Oncogene 28: 2087-2099.
237. Lee E, Kim H, Lee I-H, Jon S,. 2009. In vivo antitumor effects of chitosan-conjugated docetaxel after oral administration. J. Control. Release 140: 79-85.
238. Lee T-H, Hall K, Mechler A, Martin L, Popplewell J, Ronan G, Aguilar M-I,. 2009. Molecular imaging and orientational changes of antimicrobial peptides in membranes. Adv. Exp. Med. Biol. 611: 313-315.
239. Lenaerts L, McVey JH, Baker AH, Denby L, Nicklin S, Verbeken E, Naesens L,. 2009. Mouse adenovirus type 1 and human adenovirus type 5 differ in endothelial cell tropism and liver targeting. J. Gene Med. 11: 119-127.
240. Lenarcic R, Halbedel S, Visser L, Shaw M, Wu LJ, Errington J, Marenduzzo D, Hamoen LW,. 2009. Localisation of DivIVA by targeting to negatively curved membranes. EMBO J. 28: 2272-2282.
241. Lion JM, Mentaverri R, Rossard S, Jullian N, Courtois B, Courtois J, Brazier M, Mazière J-C, Kamel S,. 2009. Oligogalacturonic acid inhibit bone resorption and collagen degradation through its interaction with type I collagen. Biochem. Pharmacol. 78: 1448-1455.
242. Loimaranta V, Hytönen J, Pulliainen AT, Sharma A, Tenovuo J, Strömberg N, Finne J,. 2009. Leucine-rich repeats of bacterial surface proteins serve as common pattern recognition motifs of human scavenger receptor gp340. J. Biol. Chem. 284: 18614-18623.
243. Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP,. 2009. The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5′ splice site-like sequences. Proc. Natl Acad. Sci. USA 106: 5581-5586.
244. Ludvigsen M, Østergaard M, Vorum H, Jacobsen C, Honoré B,. 2009. Identification and characterization of endonuclein binding proteins: evidence of modulatory effects on signal transduction and chaperone activity. BMC Biochem. 10: 34.
245. Makarenkova HP, Hoffman MP, Beenken A, Eliseenkova AV, Meech R, Tsau C, Patel VN, Lang RA, Mohammadi M,. 2009. Differential interactions of FGFs with heparan sulfate control gradient formation and branching morphogenesis. Sci. Signal. 2: ra55.
246. Manelyte L, Guy CP, Smith RM, Dillingham MS, McGlynn P, Savery NJ,. 2009. The unstructured C-terminal extension of UvrD interacts with UvrB, but is dispensable for nucleotide excision repair. DNA Repair 8: 1300-1310.
247. Mao Y, Ge X, Frank CL, Madison JM, Koehler AN, Doud MK, Tassa C, Berry EM, Soda T, Singh KK, Biechele T, Petryshen TL, Moon RT, Haggarty SJ, Tsai L-H,. 2009. Disrupted in Schizophrenia 1 regulates neuronal progenitor proliferation via modulation of GSK3β/β-catenin signaling. Cell 136: 1017-1031.
248. Matsumoto-Takasaki A, Horie J, Sakai K, Furui Y, Sato R, Kawakami H, Toma K, Takayanagi A, Fujita-Yamaguchi Y,. 2009. Isolation and characterization of anti-T-antigen single chain antibodies from a phage library. BioSci. Trends 3: 87-95.
249. Meems H, Meijer AB, Cullinan DB, Mertens K, Gilbert GE,. 2009. Factor VIII C1 domain residues Lys 2092 and Phe 2093 contribute to membrane binding and cofactor activity. Blood 114: 3938-3946.
250. Mehanna A, Mishra B, Kurschat N, Schulze C, Bian S, Loers G, Irintchev A, Schachner M,. 2009. Polysialic acid glycomimetics promote myelination and functional recovery after peripheral nerve injury in mice. Brain 132: 1449-1462.
251. Mendillo ML, Hargreaves VV, Jamison JW, Mo AO, Li S, Putnam CD, Woods Jr VL, Kolodner RD,. 2009. A conserved MutS homolog connector domain interface interacts with MutL homologs. Proc. Natl Acad. Sci. USA 106: 22223-22228.
252. Mihlan M, Stippa S, Jõzsi M, Zipfel P,. 2009. Monomeric CRP contributes to complement control in fluid phase and on cellular surfaces and increases phagocytosis by recruiting factor H. Cell Death Differentiat. 16: 1630-1640.
253. Mukherjee P, Sureka K, Datta P, Hossain T, Barik S, Das KP, Kundu M, Basu J,. 2009. Novel role of Wag31 in protection of mycobacteria under oxidative stress. Mol. Microbiol. 73: 103-119.
254. Nishimichi N, Higashikawa F, Kinoh HH, Tateishi Y, Matsuda H, Yokosaki Y,. 2009. Polymeric osteopontin employs integrin α9β1 as a receptor and attracts neutrophils by presenting a de novo binding site. J. Biol. Chem. 284: 14769-14776.
255. Nozaki S, Yamada Y, Ogawa T,. 2009. Initiator titration complex formed at datA with the aid of IHF regulates replication timing in Escherichia coli. Genes Cells 14: 329-341.
256. Obata F, Kitami M, Inoue Y, Atsumi S, Yoshizawa Y, Sato R,. 2009. Analysis of the region for receptor binding and triggering of oligomerization on Bacillus thuringiensis Cry1Aa toxin. FEBS J. 276: 5949-5959.
257. Owens RM, Wang C, You JA, Jiambutr J, Xu AS, Marala RB, Jin MM,. 2009. Real-time quantitation of viral replication and inhibitor potency using a label-free optical biosensor. J. Recept. Signal Transduct. Res. 29: 195-201.
258. Pan J, Liu T, Kim J-Y, Zhu D, Patel C, Cui Z-H, Zhang X, Newgren JO, Reames A, Canivel D, Jesmok G, Pierce GF, Sommer JM, Jiang H,. 2009. Enhanced efficacy of recombinant FVIII in noncovalent complex with PEGylated liposome in hemophilia A mice. Blood 114: 2802-2811.
259. Park TJ, Zheng S, Kang YJ, Lee SY,. 2009. Development of a whole-cell biosensor by cell surface display of a gold-binding polypeptide on the gold surface. FEMS Microbiol. Lett. 293: 141-147.
260. Paulo JA, Hawrot E,. 2009. A radioisotope label-free α- bungarotoxin-binding assay using BIAcore sensor chip technology for real-time analysis. Anal. Biochem. 389: 86-88.
261. Prinsloo E, Oosthuizen V, Van de Venter M, Naudé RJ,. 2009. Biological inferences from IgM binding characteristics of recombinant human secretory component mutants. Immunol. Lett. 122: 94-98.
262. Radhakrishnan G, Yamamoto M, Maeda H, Nakagawa A, KatareGopalrao R, Okada H, Nishimori H, Wariishi S, Toda E, Ogawa H, Sasaguri S,. 2009. Intake of dissolved organic matter from deep seawater inhibits atherosclerosis progression. Biochem. Biophys. Res. Commun. 387: 25-30.
263. Rich RL, Miles AR, Gale BK, Myszka DG,. 2009. Detergent screening of a G-protein-coupled receptor using serial and array biosensor technologies. Anal. Biochem. 386: 98-104.
264. Rogne M, Stokka AJ, Taskén K, Collas P, Küntziger T,. 2009. Mutually exclusive binding of PP1 and RNA to AKAP149 affects the mitochondrial network. Hum. Mol. Genet. 18: 978-987.
265. 2-and membrane proximal integrin-binding motifs in the talin head control β3-integrin clustering. J. Cell Biol. 187: 715-731.
266. San Miguel B, Ghayor C, Ehrbar M, Jung RE, Zwahlen RA, Hortschansky P, Schmoekel HG, Weber FE,. 2009. N-Methyl pyrrolidone as a potent bone morphogenetic protein enhancer for bone tissue regeneration. Tissue Eng. A 15: 2955-2963.
267. Sartenaer Y, Hara R, Kawaguchi H, Thiry PA,. 2009. Relative specificity of the hybridization process on DNA chips: direct comparison of four interfacial architectures investigated by surface plasmon resonance. e-J. Surf. Sci. Nanotechnol 7: 777-782.
268. i and downstream signaling cascade activation. J. Biol. Chem. 284: 1324-1336.
269. Sela D, Shlomai J,. 2009. Regulation of UMSBP activities through redox-sensitive protein domains. Nucleic Acids Res. 37: 279-288.
270. Simister P, Schmitt M, Geitmann M, Wicht O, Danielson UH, Klein R, Bressanelli S, Lohmann V,. 2009. Structural and functional analysis of hepatitis C virus strain JFH1 polymerase. J. Virol. 83: 11926-11939.
271. Song L, Sun Z-YJ, Coleman KE, Zwick MB, Gach JS, Wang J-h, Reinherz EL, Wagner G, Kim M,. 2009. Broadly neutralizing anti-HIV-1 antibodies disrupt a hinge-related function of gp41 at the membrane interface. Proc. Natl Acad. Sci. USA 106: 9057-9062.
272. Strebe N, Guse A, Schüngel M, Schirrmann T, Hafner M, Jostock T, Hust M, Müller W, Dübel S,. 2009. Functional knockdown of VCAM-1 at the posttranslational level with ER retained antibodies. J. Immunol. Methods 341: 30-40.
273. Sureka K, Sanyal S, Basu J, Kundu M,. 2009. Polyphosphate kinase 2: a modulator of nucleoside diphosphate kinase activity in mycobacteria. Mol. Microbiol. 74: 1187-1197.
274. Takahasi K, Ochiai M, Horiuchi M, Kumeta H, Ogura K, Ashida M, Inagaki F,. 2009. Solution structure of the silkworm bGRP/GNBP3 N-terminal domain reveals the mechanism for b-1,3-glucan-specific recognition. Proc. Natl Acad. Sci. USA 106: 11679-11684.
275. Tanaka H, Hanasaki M, Isojima T, Takeuchi H, Shiroya T, Kawaguchi H,. 2009. Enhancement of sensitivity of SPR protein microarray using a novel 3D protein immobilization. Colloids Surf. B Biointerfaces 70: 259-265.
276. Tao L, Barlen B, Mazumdar SD, Zhao FS, Keusgen M,. 2009. A new detection method of mistletoe lectin I by surface plasmon resonance. Sens. Actuat. B 141: 192-199.
277. Tortajada A, Montes T, Martinez-Barricarte R, Morgan BP, Harris CL, de Cordoba SR,. 2009. The disease-protective complement factor H allotypic variant Ile62 shows increased binding affinity for C3b and enhanced cofactor activity. Hum. Mol. Genet. 18: 3452-3461.
278. Trüssel S, Dumelin C, Frey K, Villa A, Buller F, Neri D,. 2009. New strategy for the extension of the serum half-life of antibody fragments. Bioconjug. Chem. 20: 2286-2292.
279. Tsuji S, Hirabayashi N, Kato S, Akitomi J, Egashira H, Tanaka T, Waga I, Ohtsu T,. 2009. Effective isolation of RNA aptamer through suppression of PCR bias. Biochem. Biophys. Res. Commun. 386: 223-226.
280. Uematsu R, Shinohara Y, Nakagawa H, Kurogochi M, Furukawa J-I, Miura Y, Akiyama M, Shimizu H, Nishimura S-I,. 2009. Glycosylation specific for adhesion molecules in epidermis and its receptor revealed by glycoform-focused reverse genomics. Mol. Cell. Proteomics 8: 232-244.
281. Verwey NA, Veerhuis R, Twaalfhoven HA, Wouters D, Hoozemans JJM, Bollen YJM, Killestein J, Bibl M, Wiltfang J, Hack CE, Scheltens P, Blankenstein MA,. 2009. Quantification of amyloid-beta 40 in cerebrospinal fluid. J. Immunol. Methods 348: 57-66.
282. Walker A, Pugh N, Garner SF, Stephens J, Maddox B, Ouwehand WH, Farndale RW, Steward M,. 2009. Single domain antibodies against the collagen signalling receptor glycoprotein VI are inhibitors of collagen induced thrombus formation. Platelets 20: 268-276.
283. Walker MJ, Aquilina JA, Dixon NE, Robinson CV, Benesch JLP, Jergic S, Pancholi V, Cork AJ, Kobe B, Hammerschmidt S,. 2009. Defining the structural basis of human plasminogen binding by streptococcal surface enolase. Faculty of Science-Papers (Univ. Wollongong): 328: 17129-17137.
284. Wang L, Tian X, Wang J, Yang H, Fan K, Xu G, Yang K, Tan H,. 2009. Autoregulation of antibiotic biosynthesis by binding of the end product to an atypical response regulator. Proc. Natl Acad. Sci. USA 106: 8617-8622.
285. Wu M, Long S, Frutos AG, Eichelberger M, Li M, Fang Y,. 2009. Interrogation of phosphor-specific interaction on a high-throughput label-free optical biosensor system-epic system. J. Recept. Signal Transduct. Res. 29: 202-210.
286. Xie Y, He Z-G,. 2009. Characterization of physical interaction between replication initiator protein DnaA and replicative helicase from Mycobacterium tuberculosis H37Rv. Biochemistry (Mosc) 74: 1320-1327.
287. Yakubov GE, McColl J, Bongaerts JHH, Ramsden JJ,. 2009. Viscous boundary lubrication of hydrophobic surfaces by mucin. Langmuir 25: 2313-2321.
288. Yan J, Zhang C, Gu M, Bai Z, Zhang W, Qi T, Cheng Z, Peng W, Luo H, Nan F, Wang Z, Xie D,. 2009. The Arabidopsis CORONATINE INSENSITIVE1 protein is a jasmonate receptor. Plant Cell 21: 2220-2236.
289. Yu X, Harden K, Gonzalez LC, Francesco M, Chiang E, Irving B, Tom I, Ivelja S, Refino CJ, Clark H, Eaton D, Grogan JL,. 2009. The surface protein TIGIT suppresses T cell activation by promoting the generation of mature immunoregulatory dendritic cells. Nat. Immunol. 10: 48-57.
290. Zampini M, Derome A, Bailey SES, Barillà D, Hayes F,. 2009. Recruitment of the ParG segregation protein to different affinity DNA sites. J. Bacteriol. 191: 3832-3841.
291. Zhao L-L, Wu A, Bi L-J, Liu P, Zhang X-E, Jiang T, Jin G, Qi Z,. 2009. Length-dependent regulation of the Kv1.2 channel activation by its C-terminus. Mol. Membr. Biol. 26: 186-193.
292. Barlen B, Mazumdar SD, Keusgen M,. 2009. Immobilisation of biomolecules for biosensors. Phys. Status Solidi A 206: 409-416.
293. Bender F, Roach P, Tsortos A, Papadakis G, Newton MI, McHale G, Gizeli E,. 2009. Development of a combined surface plasmon resonance/surface acoustic wave device for the characterization of biomolecules. Measur. Sci. Technol. 20: 124011.
294. Boucher C, Liberelle B, Jolicoeur M, Durocher Y, De Crescenzo G,. 2009. Epidermal growth factor tethered through coiled-coil interactions induces cell surface receptor phosphorylation. Bioconjug. Chem. 20: 1569-1577.
295. Cho Y-H, Jin Y-H,. 2009. SPR Sensor Chips with Polymer Nanogratings. e-J Surf. Sci. Nanotechnol. 7: 750-756.
296. Choi S, Chae J,. 2009. Reusable biosensors via in situ electrochemical surface regeneration in microfluidic applications. Biosens. Bioelectron. 25: 527-531.
297. Choi S, Chae J,. 2009. A microfluidic biosensor based on competitive protein adsorption for thyroglobulin detection. Biosens. Bioelectron. 25: 118-123.
298. Choi S, Chae J,. 2009. A regenerative biosensing surface in microfluidics using electrochemical desorption of short-chain self-assembled monolayer. Microfluid. Nanofluid. 7: 819-827.
299. Eddings MA, Eckman JW, Arana CA, Papalia GA, Connolly JE, Gale BK, Myszka DG,. 2009. "Spot and hop": internal referencing for surface plasmon resonance imaging using a three-dimensional microfluidic flow cell array. Anal. Biochem. 385: 309-313.
300. Fabre RM, Talham DR,. 2009. Stable supported lipid bilayers on zirconium phosphonate surfaces. Langmuir 25: 12644-12652.
301. Kepplinger C, Ilk N, Sleytr UB, Schuster B,. 2009. Intact lipid vesicles reversibly tethered to a bacterial S-layer protein lattice. Soft Matter 5: 325-333.
302. Kyprianou D, Guerreiro AR, Chianella I, Piletska EV, Fowler SA, Karim K, Whitcombe MJ, Turner AP, Piletsky SA,. 2009. New reactive polymer for protein immobilisation on sensor surfaces. Biosens. Bioelectron. 24: 1365-1371.
303. Linman MJ, Culver SP, Cheng Q,. 2009. Fabrication of fracture-free nanoglassified substrates by layer-by-layer deposition with a paint gun technique for real-time monitoring of protein-lipid interactions. Langmuir 25: 3075-3082.
304. Olsen C, Van Tassel P,. 2009. Polyelectrolyte adsorption kinetics under an applied electric potential: Strongly versus weakly charged polymers. J. Colloid Interface Sci. 329: 222-227.
305. Perrino C, Lee S, Spencer N,. 2009. End-grafted sugar chains as aqueous lubricant additives: synthesis and macrotribological tests of poly (l-lysine)-graft-dextran (PLL-g-dex) copolymers. Tribol. Lett. 33: 83-96.
306. Petrie TA, Stanley BT, García AJ,. 2009. Micropatterned surfaces with controlled ligand tethering. J. Biomed. Mat. Res. A 90: 755-765.
307. Sanghera N, Swann MJ, Ronan G, Pinheiro TJT,. 2009. Insight into early events in the aggregation of the prion protein on lipid membranes. Biochim. Biophys. Acta 1788: 2245-2251.
308. Semenov OV, Malek A, Bittermann AG, Vörös J, Zisch AH,. 2009. Engineered polyelectrolyte multilayer substrates for adhesion, proliferation, and differentiation of human mesenchymal stem cells. Tissue Eng. A 15: 2977-2990.
309. Shishkov AV, Bogacheva EN, Dolgov AA, Chulichkov AL, Knyazev DG, Fedorova NV, Ksenofontov AL, Kordyukova LV, Lukashina EV, Mirsky VM, Baratova LA,. 2009. The in situ structural characterization of the influenza A virus matrix M1 protein within a virion. Prot. Pept. Lett. 16: 1407-1413.
310. Székács A, Adányi N, Székács I, Majer-Baranyi K, Szendro I,. 2009. Optical waveguide light-mode spectroscopy immunosensors for environmental monitoring. Appl. Opt. 48: 151-158.
311. Tokuhisa H, Liu J, Omori K, Kanesato M, Hiratani K, Baker LA,. 2009. Efficient biosensor interfaces based on space-controlled self-assembled monolayers. Langmuir 25: 1633-1637.
312. Tristán F, Palestino G, Menchaca J-L, Pérez E, Atmani H, Cuisinier F, Ladam G,. 2009. Tunable protein-resistance of polycation-terminated polyelectrolyte multilayers. Biomacromolecules 10: 2275-2283.
313. Trmcic-Cvitas J, Hasan E, Ramstedt M, Li X, Cooper MA, Abell C, Huck WTS, Gautrot JE,. 2009. Biofunctionalized protein resistant oligo(ethylene glycol)-derived polymer brushes as selective immobilization and sensing platforms. Biomacromolecules 10: 2885-2894.
314. Tsuzuki S, Wada A, Ito Y,. 2009. Photo-immobilization of biological components on gold-coated chips for measurements using surface plasmon resonance (SPR) and a quartz crystal microbalance (QCM). Biotechnol. Bioeng. 102: 700-707.
315. Wyszogrodzka M, Haag R,. 2009. Study of single protein adsorption onto monoamino oligoglycerol derivatives: a structure-activity relationship. Langmuir 25: 5703-5712.
316. Wyszogrodzka M, Haag R,. 2009. Synthesis and characterization of glycerol dendrons, self-assembled monolayers on gold: a detailed study of their protein resistance. Biomacromolecules 10: 1043-1054.
317. Yoshimoto K, Nozawa M, Matsumoto S, Echigo T, Nemoto S, Hatta T, Nagasaki Y,. 2009. Studies on the adsorption property and structure of polyamine-ended poly(ethylene glycol) derivatives on a gold surface by surface plasmon resonance and angle-resolved X-ray photoelectron spectroscopy. Langmuir 25: 12243-12249.