-
1
-
-
70350218974
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II.I
-
Angiosperm Phylogeny Group
-
Angiosperm Phylogeny Group. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc. 161:105-121.
-
(2009)
Bot J Linn Soc
, vol.161
, pp. 105-121
-
-
-
2
-
-
80155212200
-
Pontederiaceae
-
In: Heywood VH, editor. In Oxford: Oxford University Press
-
Barrett SCH. 1978. Pontederiaceae. In: Heywood VH, editor. In: Flowering plants of the world. Oxford: Oxford University Press. p. 309-311.
-
(1978)
Flowering Plants of the World
, pp. 309-311
-
-
Barrett, S.C.H.1
-
3
-
-
0000215223
-
Evolution of breeding systems in Eichhornia, a review
-
Barrett SCH. 1988. Evolution of breeding systems in Eichhornia, a review. Ann Mo Bot Gard. 75:741-760.
-
(1988)
Ann Mo Bot Gard
, vol.75
, pp. 741-760
-
-
Barrett, S.C.H.1
-
4
-
-
0003370897
-
The evolutionary biology of tristyly
-
In Futuyma DJ, Antonovics J, editors Oxford: Oxford University Press
-
Barrett SCH. 1993. The evolutionary biology of tristyly. In: Futuyma DJ, Antonovics J, editors. Oxford surveys in evolutionary biology. Oxford: Oxford University Press. p. 283-326.
-
(1993)
Oxford Surveys in Evolutionary Biology
, pp. 283-326
-
-
Barrett, S.C.H.1
-
5
-
-
34249029213
-
Pontederiaceae (water hyacinth family
-
In: Smith N, Mori SA, Henderson A, Stevenson DW, Heald SV, editors Princeton (NJ): Princeton Unversity Press
-
Barrett SCH. 2004. Pontederiaceae (water hyacinth family). In: Smith N, Mori SA, Henderson A, Stevenson DW, Heald SV, editors. Flowering plants of the neotropics. Princeton (NJ): Princeton Unversity Press. p. 474-476.
-
(2004)
Flowering Plants of the Neotropics
, pp. 474-476
-
-
Barrett, S.C.H.1
-
6
-
-
0002998006
-
Adaptive radiation in the aquatic plant family Pontederiaceae: Insights from phylogenetic analysis
-
In Givnish TJ, Sytsma K, editors Cambridge (UK) Cambridge University Press
-
Barrett SCH, Graham SW. 1997. Adaptive radiation in the aquatic plant family Pontederiaceae: Insights from phylogenetic analysis. In: Givnish TJ, Sytsma K, editors. Molecular evolution and adaptive radiation. Cambridge (UK): Cambridge University Press. p. 225-258.
-
(1997)
Molecular Evolution and Adaptive Radiation
, pp. 225-258
-
-
Barrett, S.C.H.1
Graham, S.W.2
-
7
-
-
0006079387
-
Experimental studies of mating-system evolution: The marriage of marker genes and floral biology
-
In Wyatt R, editor New York Chapman & Hall
-
Barrett SCH, Kohn JR, Cruzan MB. 1992. Experimental studies of mating-system evolution: The marriage of marker genes and floral biology. In: Wyatt R, editor. Ecology and evolution of plant reproduction: New approaches. New York: Chapman & Hall. p. 192-230.
-
(1992)
Ecology and Evolution of Plant Reproduction: New Approaches
, pp. 192-230
-
-
Barrett, S.C.H.1
Kohn, J.R.2
Cruzan, M.B.3
-
8
-
-
34848884808
-
Towards a phylogenetic nomenclature of Tracheophyta
-
Cantino PD, Doyle JA, Graham SW, Judd WS, Olmstead RG, Soltis DE, Soltis PS, Donoghue MJ. 2007. Towards a phylogenetic nomenclature of Tracheophyta. Taxon. 56:822-846.
-
(2007)
Taxon
, vol.56
, pp. 822-846
-
-
Cantino, P.D.1
Doyle, J.A.2
Graham, S.W.3
Judd, W.S.4
Olmstead, R.G.5
Soltis, D.E.6
Soltis, P.S.7
Donoghue, M.J.8
-
9
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. 2005. Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21:3674-3676.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Götz, S.2
García-Gómez, J.M.3
Terol, J.4
Talón, M.5
Robles, M.6
-
10
-
-
0037036630
-
Going nuclear: Gene family evolution and vertebrate phylogeny reconciled
-
Cotton JA, Page RDM. 2002. Going nuclear: Gene family evolution and vertebrate phylogeny reconciled. Proc R Soc Lond B Biol Sci. 269:1555-1561.
-
(2002)
Proc R Soc Lond B Biol Sci
, vol.269
, pp. 1555-1561
-
-
Cotton, J.A.1
Page, R.D.M.2
-
11
-
-
0000989175
-
Gene trees and species trees: Molecular systematics as one-character taxonomy
-
Doyle JJ. 1992. Gene trees and species trees: Molecular systematics as one-character taxonomy. Syst Bot. 17:144-163.
-
(1992)
Syst Bot
, vol.17
, pp. 144-163
-
-
Doyle, J.J.1
-
12
-
-
77950191132
-
Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels
-
Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens- Mack J, dePamphilis CW. 2010. Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol Biol. 10:1-18.
-
(2010)
BMC Evol Biol
, Issue.10
, pp. 1-18
-
-
Duarte, J.M.1
Wall, P.K.2
Edger, P.P.3
Landherr, L.L.4
Ma, H.5
Pires, J.C.6
Leebens- Mack, J.7
DePamphilis, C.W.8
-
13
-
-
0001322448
-
Phylogenetic systematics of Pontederiaceae
-
Eckenwalder JE, Barrett SCH. 1986. Phylogenetic systematics of Pontederiaceae. Syst Bot. 11:373-391.
-
(1986)
Syst Bot
, vol.11
, pp. 373-391
-
-
Eckenwalder, J.E.1
Barrett, S.C.H.2
-
14
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
15
-
-
70349487868
-
Hybrid origins and homoploid reticulate evolution within Heliosperma (Sileneae, Caryophyllaceae)- a multigene phylogenetic approach with relative dating
-
Frajman B, Eggens F, Oxelman B. 2009. Hybrid origins and homoploid reticulate evolution within Heliosperma (Sileneae, Caryophyllaceae)- a multigene phylogenetic approach with relative dating. Syst Biol. 58:328-345.
-
(2009)
Syst Biol
, vol.58
, pp. 328-345
-
-
Frajman, B.1
Eggens, F.2
Oxelman, B.3
-
16
-
-
0000365320
-
Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences
-
Goodman M, Czelusniak J, Moore GW, Romero-Herrera AE, Matsuda G. 1979. Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Syst Zool. 28:132-163.
-
(1979)
Syst Zool
, vol.28
, pp. 132-163
-
-
Goodman, M.1
Czelusniak, J.2
Moore, G.W.3
Romero-Herrera, A.E.4
Matsuda, G.5
-
17
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
Götz S, García-Gómez JM, Terol J, et al. 2008. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36:3420-3435.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3420-3435
-
-
Götz, S.1
García-Gómez, J.M.2
Terol, J.3
-
19
-
-
0002289552
-
Phylogenetic systematics of Pontederiales: Implications for breeding system evolution
-
In Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors Kew (UK) Royal Botanic Gardens
-
Graham SW, Barrett SCH. 1995. Phylogenetic systematics of Pontederiales: Implications for breeding system evolution. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: Systematics and evolution. Kew (UK): Royal Botanic Gardens. p. 415-441.
-
(1995)
Monocotyledons: Systematics and evolution
, pp. 415-441
-
-
Graham, S.W.1
Barrett, S.C.H.2
-
20
-
-
0032226179
-
Phylogenetic congruence and discordance among one morphological and three molecular data sets from Pontederiaceae
-
Graham SW, Kohn JR, Morton BR, Eckenwalder JE, Barrett SCH. 1998. Phylogenetic congruence and discordance among one morphological and three molecular data sets from Pontederiaceae. Syst Biol. 47:545-567.
-
(1998)
Syst Biol
, vol.47
, pp. 545-567
-
-
Graham, S.W.1
Kohn, J.R.2
Morton, B.R.3
Eckenwalder, J.E.4
Barrett, S.C.H.5
-
21
-
-
0033666273
-
Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
-
Graham SW, Olmstead RG. 2000. Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms. Am J Bot. 87:1712-1730.
-
(2000)
Am J Bot
, vol.87
, pp. 1712-1730
-
-
Graham, S.W.1
Olmstead, R.G.2
-
22
-
-
0036790003
-
Rooting phylogenetic trees with distant outgroups: A case study from the commelinoid monocots
-
Graham SW, Olmstead RG, Barrett SCH. 2002. Rooting phylogenetic trees with distant outgroups: A case study from the commelinoid monocots. Mol Biol Evol. 19:1769-1781.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1769-1781
-
-
Graham, S.W.1
Olmstead, R.G.2
Barrett, S.C.H.3
-
23
-
-
0033679542
-
Microstructural changes in noncoding chloroplast DNA: Interpretation, evolution, and utility of indels and inversions in basal angiosperm phylogenetic inference
-
Graham SW, Reeves PA, Burns ACE, Olmstead RG. 2000. Microstructural changes in noncoding chloroplast DNA: Interpretation, evolution, and utility of indels and inversions in basal angiosperm phylogenetic inference. Int J Plant Sci. 161:S83-S96.
-
(2000)
Int J Plant Sci
, vol.161
-
-
Graham, S.W.1
Reeves, P.A.2
Burns, A.C.E.3
Olmstead, R.G.4
-
24
-
-
77958450862
-
Deep genomic-scale analyses of the metazoa reject Coelomata: Evidence from single- and multigene families analyzed under a supertree and supermatrix paradigm
-
Holton TA, Pisani D. 2010. Deep genomic-scale analyses of the metazoa reject Coelomata: Evidence from single- and multigene families analyzed under a supertree and supermatrix paradigm. Genome Biol Evol. 2:310-324.
-
(2010)
Genome Biol Evol
, Issue.2
, pp. 310-324
-
-
Holton, T.A.1
Pisani, D.2
-
25
-
-
84914550563
-
A systematic revision of the genus Heteranthera (sensu lato, Pontederiaceae
-
PhD Thesis]
-
Horn CN. 1985. A systematic revision of the genus Heteranthera (sensu lato, Pontederiaceae). [Tuscaloosa (AL)]: University of Alabama.[PhD Thesis]
-
(1985)
Tuscaloosa (AL)]: University of Alabama
-
-
Horn, C.N.1
-
26
-
-
27944438804
-
The evolution of nuclear genome structure in seed plants
-
Kellogg EA, Bennetzen JL. 2004. The evolution of nuclear genome structure in seed plants. Am J Bot. 91:1709-1725.
-
(2004)
Am J Bot
, vol.91
, pp. 1709-1725
-
-
Kellogg, E.A.1
Bennetzen, J.L.2
-
27
-
-
0029660867
-
Reconstruction of the evolution of reproductive characters in Pontederiaceae using phylogenetic evidence from chloroplast DNA restriction-site variation
-
Kohn JR, Graham SW, Morton BR, Doyle JJ, Barrett SCH. 1996. Reconstruction of the evolution of reproductive characters in Pontederiaceae using phylogenetic evidence from chloroplast DNA restriction-site variation. Evolution 50:1454-1469.
-
(1996)
Evolution
, vol.50
, pp. 1454-1469
-
-
Kohn, J.R.1
Graham, S.W.2
Morton, B.R.3
Doyle, J.J.4
Barrett, S.C.H.5
-
28
-
-
0031504952
-
Gene trees in species trees
-
Maddison WP. 1997. Gene trees in species trees. Syst Biol. 46:523-536.
-
(1997)
Syst Biol
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
29
-
-
0035666658
-
Characterization of the adenosine deaminase-related growth factor (ADGF) gene family in Drosophila
-
Maier SA, Podemski L, Graham SW, McDermid HE, Locke J. 2001. Characterization of the adenosine deaminase-related growth factor (ADGF) gene family in Drosophila. Gene 280:27-36.
-
(2001)
Gene
, vol.280
, pp. 27-36
-
-
Maier, S.A.1
Podemski, L.2
Graham, S.W.3
McDermid, H.E.4
Locke, J.5
-
30
-
-
0033615479
-
The root of angiosperm phylogeny inferred from duplicate phytochrome genes
-
Mathews S, Donoghue MJ. 1999. The root of angiosperm phylogeny inferred from duplicate phytochrome genes. Science. 286:947-950.
-
(1999)
Science
, vol.286
, pp. 947-950
-
-
Mathews, S.1
Donoghue, M.J.2
-
31
-
-
77649249692
-
Probabilistic models of chromosome number evolution and the inference of polyploidy
-
Mayrose I, Barker MS, Otto SP. 2010. Probabilistic models of chromosome number evolution and the inference of polyploidy. Syst Biol. 59:132-144.
-
(2010)
Syst Biol
, vol.59
, pp. 132-144
-
-
Mayrose, I.1
Barker, M.S.2
Otto, S.P.3
-
32
-
-
77749271392
-
Mating-system variation, demographic history and patterns of nucleotide diversity in the tristylous plant Eichhornia paniculata
-
Ness RW, Wright SI, Barrett SCH. 2010. Mating-system variation, demographic history and patterns of nucleotide diversity in the tristylous plant Eichhornia paniculata. Genetics 184:381-392.
-
(2010)
Genetics
, vol.184
, pp. 381-392
-
-
Ness, R.W.1
Wright, S.I.2
Barrett, S.C.H.3
-
33
-
-
0028005619
-
Chloroplast DNA systematics: A review of methods and data analysis
-
Olmstead RG, Palmer JD. 1994. Chloroplast DNA systematics: A review of methods and data analysis. Am J Bot. 81:1205-1224.
-
(1994)
Am J Bot
, vol.81
, pp. 1205-1224
-
-
Olmstead, R.G.1
Palmer, J.D.2
-
34
-
-
0031774059
-
GeneTree: Comparing gene and species phylogenies using reconciled trees
-
Page RDM. 1998. GeneTree: Comparing gene and species phylogenies using reconciled trees. Bioinformatics 14:819-820.
-
(1998)
Bioinformatics
, vol.14
, pp. 819-820
-
-
Page, R.D.M.1
-
35
-
-
0031110886
-
From gene to organismal phylogeny: Reconciled trees and the gene tree/species tree problem
-
Page RDM, Charleston MA. 1997. From gene to organismal phylogeny: Reconciled trees and the gene tree/species tree problem. Mol Phylogenet Evol. 7:231-240.
-
(1997)
Mol Phylogenet Evol
, vol.7
, pp. 231-240
-
-
Page, R.D.M.1
Charleston, M.A.2
-
36
-
-
77649189590
-
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
-
Regier JC, Shultz JW, Zwick A, Hussey A, Ball B, Wetzer R, Martin JW, Cunningham CW. 2010. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature 463:1079-1083.
-
(2010)
Nature
, vol.463
, pp. 1079-1083
-
-
Regier, J.C.1
Shultz, J.W.2
Zwick, A.3
Hussey, A.4
Ball, B.5
Wetzer, R.6
Martin, J.W.7
Cunningham, C.W.8
-
37
-
-
47649090803
-
Phylogenetic relationships in the monocot order Commelinales, with a focus on Philydraceae
-
Saarela JM, Prentis PJ, Rai HS, Graham SW. 2008. Phylogenetic relationships in the monocot order Commelinales, with a focus on Philydraceae. Botany 86:719-731.
-
(2008)
Botany
, vol.86
, pp. 719-731
-
-
Saarela, J.M.1
Prentis, P.J.2
Rai, H.S.3
Graham, S.W.4
-
38
-
-
34248217100
-
Inferring angiosperm phylogeny from EST data with widespread gene duplication
-
Sanderson MJ, McMahon MM. 2007. Inferring angiosperm phylogeny from EST data with widespread gene duplication. BMC Evol Biol. 7:1-14.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 1-14
-
-
Sanderson, M.J.1
McMahon, M.M.2
-
39
-
-
0031296691
-
Inferring species trees from gene trees: A phylogenetic analysis of the Elapidae (Serpentes) based on the amino acid sequences of venom proteins
-
Slowinski JB, Knight A, Rooney AP. 1997. Inferring species trees from gene trees: A phylogenetic analysis of the Elapidae (Serpentes) based on the amino acid sequences of venom proteins. Mol Phylogenet Evol. 8:349-362.
-
(1997)
Mol Phylogenet Evol
, vol.8
, pp. 349-362
-
-
Slowinski, J.B.1
Knight, A.2
Rooney, A.P.3
-
40
-
-
50249178528
-
Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids
-
Steele PR, Guisinger-Bellian M, Linder CR, Jansen RK. 2008. Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids. Mol Phylogenet Evol. 48:1013-1026.
-
(2008)
Mol Phylogenet Evol
, vol.48
, pp. 1013-1026
-
-
Steele, P.R.1
Guisinger-Bellian, M.2
Linder, C.R.3
Jansen, R.K.4
-
42
-
-
46249126320
-
DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony
-
Wehe A, Bansal MS, Burleigh JG, Eulenstein O. 2008. DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony. Bioinformatics. 24:1540-1541.
-
(2008)
Bioinformatics
, vol.24
, pp. 1540-1541
-
-
Wehe, A.1
Bansal, M.S.2
Burleigh, J.G.3
Eulenstein, O.4
-
43
-
-
80155134868
-
-
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion [ PhD Thesis]. [ Austin (TX)] The University of Texas at Austin
-
Zwickl DJ. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion [PhD Thesis]. [Austin (TX)]: The University of Texas at Austin.
-
(2006)
-
-
Zwickl, D.J.1
|