Corrigendum to “Multilocus phylogeny and species delimitation within the Natterer's bat species complex in the Western Palearctic” [Molecular Phylogenetics and Evolution 61 (2011) 888–898](S105579031100354X)(10.1016/j.ympev.2011.08.010);Multilocus phylogeny and species delimitation within the Natterer's bat species complex in the Western Palearctic

Molecular Phylogenetics and Evolution

Volumn 61, Issue 3, 2011, Pages 888-898

  Salicini, I ^a   Ibanez C ^a   Juste, J ^a  

^a DEPARTMENT OF CONSERVATION BIOLOGY   (Spain)

Author keywords

Chiroptera; Cryptic species; Integrative taxonomy; Introns; Myotis; Species tree

Indexed keywords

CHIROPTERA; MYOTIS; MYOTIS NATTERERI;

EID: 80055111873     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2018.01.011     Document Type: Erratum

References (75)

1. Agapow P.M. Species: demarcation and diversity. Phylogeny and Conservation 2005, 57-75. Cambridge University Press. A. Purvis, J.L. Gittleman, T. Brooks (Eds.).
2. Agapow P.M., Bininda-Emonds O.R.P., Crandall K.A., Gittleman J.L., Mace G.M., Marshall J.C., Purvis A. The impact of species concept on biodiversity studies. Quart. Rev. Biol. 2004, 79:161-179.
3. Appleton B.R., McKenzie J.A., Christidis L. Molecular systematics and biogeography of the bent-wing bat complex Miniopterus schreibersii (Kuhl, 1817) (Chiroptera, Vespertilionidae). Mol. Phylogenet. Evol. 2004, 31:431-439.
4. Barrat E.M., Deaville R., Burland T.M., Bruford M.W., Jones G., Racey P.A., Wayne R.K. DNA answers the call of pipistrelle bat species. Nature 1997, 387:138-139.
5. Belfiore N.M., Liu L., Moritz C. Multilocus phylogenetics of a rapid radiation in the genus Thomomys. Syst. Biol. 2008, 57:294-310.
6. Benda P., Ruedi M., Aulagnier S. New data on the distribution of bats (Chiroptera) in Morocco. Vespertilio 2004, 8:13-44.
7. Blair C., Murphy R.W. Recent trends in molecular phylogenetic analysis: where to next?. J. Heredity 2011, 102:130-138.
8. Burland T.M., Worthington Wilmer J. Seeing in the dark: molecular approaches to the study of bat populations. Biol. Rev. 2001, 76:389-409.
9. Cabrera A. Ensayo monográfico sobre los quirópteros de España. Memor. Real Soc. Española Hist. Nat. 1904, 2(5):249-287.
10. Cabrera A. Fauna ibérica 1914, Mamíferos. Museo Nacional de Ciencias Naturales, Madrid.
11. Carstens B.C., Dewey T.A. Species delimitation using a combined coalescent and information theoretic approach: an example from North American Myotis bats. Syst. Biol. 2010, 59:400-414.
12. Creer S., Malhotra A., Thorpe R.S., Pook C.E. Targeting optimal introns for phylogenetic analyses in non-model taxa: experimental results in Asian pitvipers. Cladistics 2005, 21:390-395.
13. de Queiroz K. Species concepts and species delimitation. Syst. Biol. 2007, 56:879-886.
14. Degnan J.H., Rosenberg N.A. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol. Evol. 2009, 24:332-340.
15. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
16. Eckert A.J., Carstens B.C. Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow. Mol. Phylogenet. Evol. 2008, 49:832-842.
17. Edwards S.V. Is a new and general theory of molecular systematics emerging?. Evolution 2008, 63:1-19.
18. Evin A., Lecoq V., Durand M.O., Tillon L., Pons J.M. A new species for the French bat list: Myotis escalerai (Chiroptera: Vespertilionidae). Mammalia 2009, 73:142-144.
19. Findley J.S. Phenetic relationships among bats of the genus Myotis. Syst. Zool. 1972, 21:31-52.
20. Fujita M.K., McGuire J.A., Donnellan S.C., Moritz C. Diversification and persistence at the arid-monsoonal interface. Australia-wide biogeography of the Bynoe's gecko (Heteronotia binoei; Gekkonidae). Evolution 2010, 64:2293-2314.
21. Funk D.J., Omland K.E. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu. Rev. Ecol. Evol. Syst. 2003, 34:397-423.
22. Galimberti, A., Martinoli, A., Russo, D., Mucedda, M., Casiraghi, M., 2010. Molecular identification of Italian Mouse-eared bats (genus Myotis). In: Nimis, P.L., Vignes Lebbe R. (Eds.), Tools for Identifying Biodiversity: Progress and Problems. Proceedings of the International Congress, pp. 289-294.
23. García-Mudarra J.L., Ibáñez C., Juste J. The Straits of Gibraltar: barrier or bridge to Ibero-Moroccan bat diversity?. Biol. J. Linn. Soc. Lond. 2009, 96:434-450.
24. Goodman S.M., Maminirina C.P., Weyeneth N., Bradman H.M., Christidis L., Ruedi M., Appleton B. The use of molecular and morphological characters to resolve the taxonomic identity of cryptic species: the case of Miniopterus manavi (Chiroptera, Miniopteridae). Zool. Scr. 2009, 38:339-363.
25. Heled J., Drummond A.J. Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 2010, 27:570-580.
26. Helversen O., Heller K.-G., Mayer F., Nemeth A., Volleth M., Gombkoto P. Cryptic mammalian species: a new species of whiskered bat (Myotis alcathoe n. sp.) in Europe. Naturwissenschaften 2001, 88:217-223.
27. Hird S., Kubatko L.S., Carstens B.C. Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling. Mol. Phylogenet. Evol. 2010, 57:888-898.
28. Hoofer S.R., Van Den Bussche R.A. Molecular phylogenetics of the chiropteran family Vespertilionidae. Acta Chiropt. 2003, 5(suppl.):1-63.
29. Horáček I., Hanák V. Comments on the systematics and phylogeny of Myotis nattereri (Kuhl, 1818). Myotis 1984, 21-22:20-29.
30. Huelsenbeck J.P., Andolfatto P. Inference of population structure under a Dirichlet process model. Genetics 2007, 175:1787-1802.
31. Ibáñez C., García-Mudarra J.L., Ruedi M., Stadelmann B., Juste J. The Iberian contribution to cryptic diversity in European bats. Acta Chiropt. 2006, 8:277-297.
32. Igea J., Juste J., Castresana J. Novel intron markers to study the phylogeny of closely related mammalian species. BMC Evol. Biol. 2010, 10:369.
33. Isaac N.J.B., Mallet J., Mace G.M. Taxonomic inflation: its influence on macroecology and conservation. Trends Ecol. Evol. 2004, 19:464-469.
34. Jones G. Molecular evolution: gene convergence in echolocating mammals. Curr. Biol. 2010, 20:62-64.
35. Jones G., Parsons S., Zhang S., Stadelmann B., Benda P., Ruedi M. Echolocation calls, wing shape, diet and phylogenetic diagnosis of the endemic Chinese bat Myotis pequinius. Acta Chiropt. 2006, 8:451-463.
36. Kawai K., Nikaido M., Harada M., Matsumura S., Lin L.-K., Wu Y., Hasegawa M., Okada N. Intra- and interfamily relationships of Vespertilionidae inferred by various molecular markers including SINE insertion data. J. Mol. Evol. 2002, 55:284-301.
37. Kiefer A., Veith M. A new species of long-eared bat from Europe (Chiroptera: Vespertilionidae). Myotis 2002, 39:5-16.
38. Kubatko L.S., Degnan J.H. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Syst. Biol. 2007, 56:17-24.
39. Leaché A.D. Species tree discordance traces to phylogeographic clade boundaries in North American Fence Lizards (Sceloporus). Syst. Biol. 2009, 58:547-559.
40. Leaché A.D., Fujita M.K. Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus). Proc. Roy. Soc. B 2010, 277:3071-3077.
41. Librado P., Rozas J. DNASP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
42. Liu L., Yu L., Kubatko L., Pearl D.K., Edwards S.V. Coalescent methods for estimating phylogenetic trees. Mol. Phylogenet. Evol. 2009, 53:320-328.
43. Maddison W.P. Gene trees in species trees. Syst. Biol. 1997, 46:523-536.
44. Maddison W.P., Knowles L.L. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 2006, 55:21-30.
45. Mayden R.L. A hierarchy of species concepts: the denouement in the saga of the species problem. Species: The Units of Biodiversity 1997, 381-424. Chapman & Hall, London. M.F. Claridge, H.A. Dawah, M.R. Wilson (Eds.).
46. Mayer F., von Helversen O. Cryptic diversity in European bats. Proc. Roy. Soc. B 2001, 268:1825-1832.
47. Mayer F., Dietz C., Kiefer A. Molecular species identification boosts bat diversity. Front. Zool. 2007, 4:4.
48. Menu H. Morphotypes dentaires actuels et fossiles des chiroptères vespertilioninés. 2ème partie: Implications systématiques et phylogéniques. Paleovertebrata 1987, 17:77-150.
49. Mitchel-Jones A.J., Amori G., Bogdanowicz W., Krystufek B., Reijnders P.J.H., Spitzenberger F., Stubbe M., Thissen J.B.M., Vohralýk V., Zima J. The Atlas of European Mammals 1999, T & AD Poyser, London.
50. Moore W.S. Inferring phylogenies from mtDNA variation: mitochondrial gene trees versus nuclear-gene trees. Evolution 1995, 49:718-726.
51. Myers N., Mittermeier R.A., Mittermeier C.G., Da Fonseca G.A.B., Kent J. Biodiversity hotspots for conservation priorities. Nature 2000, 403:853-858.
52. Nylander J.A.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 2008, 24:581-583.
53. Padial J.M., Miralles A., De la Riva I., Vences M. The integrative future of taxonomy. Front. Zool. 2010, 7:16.
54. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
55. Rambaut, A., Drummond, A.J., 2007. Tracer v1.4. http://beast.bio.ed.ac.uk/Tracer.
56. Ronquist F., Huelsenbeck J.P. Mr Bayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
57. Ross K.G., Gotzek D., Ascunce M.S., Shoemaker D.D. Species delimitation: a case study in a problematic ant taxon. Syst. Biol. 2010, 59:162-184.
58. Ruedi M., Mayer F. Molecular systematics of bats of the genus Myotis (Vespertilionidae) suggests deterministic ecomorphological convergences. Mol. Phylogenet. Evol. 2001, 21:436-448.
59. Sambrook J.E., Fritsch F., Maniatis T. Molecular Cloning: A Laboratory Manual 1989, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. 2nd ed.
60. Sattler T., Bontadina F., Hirzel A.H., Arlettaz R. Ecological niche modelling of two cryptic bat species calls for a reassessment of their conservation status. J. Appl. Ecol. 2007, 44:1188-1199.
61. Shaffer H.B., Thomson R.C. Delimiting species in recent radiations. Syst. Biol. 2007, 56:896-906.
62. Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 2002, 51:492-508.
63. Shimodaira H., Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 1999, 16:1114-1116.
64. Shimodaira H., Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 2001, 17:1246-1247.
65. Simmons N.B. Order chiroptera. Mammal Species of the World: A Taxonomic and Geographic Reference 2005, 312-529. Smithsonian Institution Press, Washington, DC. 3rd ed. D.E. Wilson, D.M. Reeder (Eds.).
66. Sites J.W.Jr., Marshall J.C. Delimiting species: a Renaissance issue in systematic biology. Trends Ecol. Evol. 2003, 18:462-470.
67. Spitzenberger F., Strelkov P., Winkler H., Haring E. A preliminary revision of the genus Plecotus (Chiroptera, Vespertilionidae) based on genetic and morphological results. Zool. Scr. 2006, 35:187-230.
68. Stadelmann B., Lin L.K., Kunz T.H., Ruedi M. Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes. Mol. Phylogenet. Evol. 2007, 43:2-48.
69. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22(21):2688-2690.
70. Stephens M., Smith N.J., Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Human Gen. 2001, 68:978-989.
71. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
72. Weisrock D.W., Rasoloarison R.M., Fiorentino I., Ralison J.M., Goodman S.M., Kappeler P.M., Yoder A.D. Delimiting species without nuclear monophyly in Madagascar's mouse lemurs. PLoS ONE 2010, 5:e9883.
73. Wiens J.J. Species delimitation: new approaches for discovering diversity. Syst. Biol. 2007, 56:875-878.
74. Worthington Wilmer J., Barratt E. A non-lethal method of tissue sampling for genetic studies of Chiropterans. Bat Res. News 1996, 37:1-3.
75. Yang Z., Rannala B. Bayesian species delimitation using multilocus sequence data. Proc. Natl. Acad. Sci. USA 2010, 107:9264-9269.