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Volumn 98, Issue 5, 2011, Pages 352-358

4040 SNPs for genomic analysis in the rhesus macaque (Macaca mulatta)

Author keywords

Linkage disequilibrium; Macaca mulatta; Nonhuman primate; SNP

Indexed keywords

ALLELE; ARTICLE; CHINESE; CONTROLLED STUDY; GENE LINKAGE DISEQUILIBRIUM; GENOMICS; HETEROZYGOSITY; INDIAN; MACACA MULATTA; MYANMAR; NONHUMAN; POPULATION GENETICS; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; UNITED STATES; VALIDATION STUDY; WILD TYPE;

EID: 80055077877     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2011.08.004     Document Type: Article
Times cited : (15)

References (49)
  • 1
    • 34247352040 scopus 로고    scopus 로고
    • Evolutionary and biomedical insights from the rhesus macaque genome
    • R.M.G.S.a.A. Consortium
    • Gibbs R. Evolutionary and biomedical insights from the rhesus macaque genome. Science 2007, 316:222-234. R.M.G.S.a.A. Consortium.
    • (2007) Science , vol.316 , pp. 222-234
    • Gibbs, R.1
  • 6
    • 0034892773 scopus 로고    scopus 로고
    • Toward developing a genome-wide microsatellite marker set for linkage analysis in the rhesus macaque (Macaca mulatta): identification of 76 polymorphic markers
    • Hadfield R.M., Pullen J.G., Davies K.F., Wolfensohn S.E., Kemnitz J.W., Weeks D.E., Bennett S.T., Kennedy S.H. Toward developing a genome-wide microsatellite marker set for linkage analysis in the rhesus macaque (Macaca mulatta): identification of 76 polymorphic markers. Am. J. Primatol. 2001, 54:223-231.
    • (2001) Am. J. Primatol. , vol.54 , pp. 223-231
    • Hadfield, R.M.1    Pullen, J.G.2    Davies, K.F.3    Wolfensohn, S.E.4    Kemnitz, J.W.5    Weeks, D.E.6    Bennett, S.T.7    Kennedy, S.H.8
  • 7
    • 80055098564 scopus 로고    scopus 로고
    • Mouse in Science: Why Mice?, in, UC Davis Center for Animal Alternatives
    • L.A. Hart, A. Dassler, Mouse in Science: Why Mice?, in, UC Davis Center for Animal Alternatives.
    • Hart, L.A.1    Dassler, A.2
  • 8
    • 80055074759 scopus 로고    scopus 로고
    • Note
    • U.S.D.o. Agriculture, Annual Report Animal Usage by Fiscal Year: Fiscal Year 2009, in: A.a.P.H.I. Service (Ed.), 2011.
  • 10
    • 36448994441 scopus 로고    scopus 로고
    • A translational approach for limb vascular delivery of the micro-distrophin gene without high volume or high pressure for treatment of Duchenne muscular dystrophy
    • Rodino-Klapac L.R., Janssen P.M.L., Montgomery C.L., Coley B.D., Chicoine L.G., Clark K.R., Mendell J.R. A translational approach for limb vascular delivery of the micro-distrophin gene without high volume or high pressure for treatment of Duchenne muscular dystrophy. J. Transl. Med. 2007, 5:45.
    • (2007) J. Transl. Med. , vol.5 , pp. 45
    • Rodino-Klapac, L.R.1    Janssen, P.M.L.2    Montgomery, C.L.3    Coley, B.D.4    Chicoine, L.G.5    Clark, K.R.6    Mendell, J.R.7
  • 16
    • 4544320652 scopus 로고    scopus 로고
    • Use of primates in research: a global overview
    • Carlsson H.E., Schapiro S.J., Hau J. Use of primates in research: a global overview. Am. J. Primatol. 2004, 63:225-237.
    • (2004) Am. J. Primatol. , vol.63 , pp. 225-237
    • Carlsson, H.E.1    Schapiro, S.J.2    Hau, J.3
  • 17
    • 53349160053 scopus 로고    scopus 로고
    • Challenges in the development of an HIV-1 vaccine
    • Barouch D. Challenges in the development of an HIV-1 vaccine. Nature 2008, 455:613-619.
    • (2008) Nature , vol.455 , pp. 613-619
    • Barouch, D.1
  • 18
    • 70249145830 scopus 로고    scopus 로고
    • Update on animal models for HIV research
    • Haigwood N.L. Update on animal models for HIV research. Eur. J. Immunol. 2009, 39:1991-2058.
    • (2009) Eur. J. Immunol. , vol.39 , pp. 1991-2058
    • Haigwood, N.L.1
  • 21
    • 13944271115 scopus 로고    scopus 로고
    • Mitochondrial DNA variation in Chinese and Indian rhesus macaques (Macaca mulatta)
    • Smith D.G., McDonough J. Mitochondrial DNA variation in Chinese and Indian rhesus macaques (Macaca mulatta). Am. J. Primatol. 2005, 65:1-25.
    • (2005) Am. J. Primatol. , vol.65 , pp. 1-25
    • Smith, D.G.1    McDonough, J.2
  • 22
    • 33747070195 scopus 로고    scopus 로고
    • Identification of country of origin and admixture between Indian and Chinese rhesus macaques
    • Smith D.G., George D., Kanthaswamy S., McDonough J. Identification of country of origin and admixture between Indian and Chinese rhesus macaques. Int. J. Primatol. 2006, 27:881-898.
    • (2006) Int. J. Primatol. , vol.27 , pp. 881-898
    • Smith, D.G.1    George, D.2    Kanthaswamy, S.3    McDonough, J.4
  • 23
    • 79953244620 scopus 로고    scopus 로고
    • The effect of SNP discovery method and sample size on estimation of population genetic data for Chinese and Indian rhesus macaques (Macaca mulatta)
    • Satkoski Trask J.A., Malhi R.S., Kanthaswamy S., Johnson J., Garnica W.T., Malladi V., Smith D.G. The effect of SNP discovery method and sample size on estimation of population genetic data for Chinese and Indian rhesus macaques (Macaca mulatta). Primates 2011, 52:129-138.
    • (2011) Primates , vol.52 , pp. 129-138
    • Satkoski Trask, J.A.1    Malhi, R.S.2    Kanthaswamy, S.3    Johnson, J.4    Garnica, W.T.5    Malladi, V.6    Smith, D.G.7
  • 25
    • 44349095887 scopus 로고    scopus 로고
    • Adegenet: a R package for the multivariate analysis of genetic markers
    • Jombart T. Adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 2008, 24:1403-1405.
    • (2008) Bioinformatics , vol.24 , pp. 1403-1405
    • Jombart, T.1
  • 29
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: a comprehensive approach for supporting accessible, reproducible and transparent computational research in the life sciences
    • Goecks J., Nekrutenko A., Taylor J., Team T.G. Galaxy: a comprehensive approach for supporting accessible, reproducible and transparent computational research in the life sciences. Genome Biol. 2010, 11:R86.
    • (2010) Genome Biol. , vol.11
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3    Team, T.G.4
  • 30
    • 0035711599 scopus 로고    scopus 로고
    • Mutation and linkage disequilibrium in human mtDNA
    • Hedrick P., Kumar S. Mutation and linkage disequilibrium in human mtDNA. Eur. J. Hum. Genet. 2001, 9:969-972.
    • (2001) Eur. J. Hum. Genet. , vol.9 , pp. 969-972
    • Hedrick, P.1    Kumar, S.2
  • 31
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: analysis and visualization of LD and haplotype maps
    • Barrett J.C., Fry B., Maller J., Daly M.J. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005, 21:263-264.
    • (2005) Bioinformatics , vol.21 , pp. 263-264
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 32
    • 33749394003 scopus 로고    scopus 로고
    • Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome
    • Eberle M.A., Rieder M., Kruglyak L., Nickerson D. Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome. PLos Genet. 2006, 2:1319.
    • (2006) PLos Genet. , vol.2 , pp. 1319
    • Eberle, M.A.1    Rieder, M.2    Kruglyak, L.3    Nickerson, D.4
  • 35
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander E.S., Consortium I.H.G.S. Initial sequencing and analysis of the human genome. Nature 2001, 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Consortium, I.H.G.S.2
  • 37
    • 0036844238 scopus 로고    scopus 로고
    • Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination and mutation
    • Wang N., Akey J.M., Zhang K., Chakraborty R., Jin L. Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination and mutation. Am. J. Hum. Genet. 2002, 71:1227-1234.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 1227-1234
    • Wang, N.1    Akey, J.M.2    Zhang, K.3    Chakraborty, R.4    Jin, L.5
  • 39
    • 3843073210 scopus 로고    scopus 로고
    • Linkage disequilibrium as a signature of selective sweeps
    • Kim Y., Nielsen R. Linkage disequilibrium as a signature of selective sweeps. Genetics 2004, 167:1513-1524.
    • (2004) Genetics , vol.167 , pp. 1513-1524
    • Kim, Y.1    Nielsen, R.2
  • 41
    • 79960639768 scopus 로고    scopus 로고
    • High-throughput single-nucleotide polymorphism discovery and the search for candidate genes for long-term SIVmac nonprogression in Chinese rhesus macaques (Macaca mulatta)
    • Satkoski Trask J.A., Garnica W.T., Malhi R.S., Kanthaswamy S., Smith D.G. High-throughput single-nucleotide polymorphism discovery and the search for candidate genes for long-term SIVmac nonprogression in Chinese rhesus macaques (Macaca mulatta). J. Med. Primatol. 2011, 40:224-232.
    • (2011) J. Med. Primatol. , vol.40 , pp. 224-232
    • Satkoski Trask, J.A.1    Garnica, W.T.2    Malhi, R.S.3    Kanthaswamy, S.4    Smith, D.G.5
  • 43
    • 33846912027 scopus 로고    scopus 로고
    • Mitochondrial DNA variation within and among regional populations of longtail macaques (Macaca fascicularis) in relation to other species of the fascicularis group of macaques
    • Smith D.G., McDonough J., George D. Mitochondrial DNA variation within and among regional populations of longtail macaques (Macaca fascicularis) in relation to other species of the fascicularis group of macaques. Am. J. Primatol. 2007, 69:182-198.
    • (2007) Am. J. Primatol. , vol.69 , pp. 182-198
    • Smith, D.G.1    McDonough, J.2    George, D.3
  • 44
    • 77955152392 scopus 로고    scopus 로고
    • Detecting signatures of inter-regional and inter-specific hybridization among the Chinese rhesus macaque specific pathogen-free (SPF) population using single nucleotide polymorphic (SNP) markers
    • Kanthaswamy S., Satkoski J., Kou A., Malladi V., Glenn Smith D. Detecting signatures of inter-regional and inter-specific hybridization among the Chinese rhesus macaque specific pathogen-free (SPF) population using single nucleotide polymorphic (SNP) markers. J. Med. Primatol. 2010, 39:252-265.
    • (2010) J. Med. Primatol. , vol.39 , pp. 252-265
    • Kanthaswamy, S.1    Satkoski, J.2    Kou, A.3    Malladi, V.4    Glenn Smith, D.5
  • 45
    • 28844460552 scopus 로고
    • Breeding colonies of macaques and gibbons on Santiago Island, Puerto Rico
    • S. Karger, Basel, W.I.B. Beveridge (Ed.)
    • Carpenter C.R. Breeding colonies of macaques and gibbons on Santiago Island, Puerto Rico. Breeding Primates 1972, 76-87. S. Karger, Basel. W.I.B. Beveridge (Ed.).
    • (1972) Breeding Primates , pp. 76-87
    • Carpenter, C.R.1
  • 46
    • 0016203538 scopus 로고
    • Genetic studies of serum transferrins of free-ranging rhesus macaques of Cayo Santiago, Macaca mulatta (Zimmerman 1780)
    • Buettner-Janusch J., Mason G.A., Buettner-Janusch V., Sade D.S. Genetic studies of serum transferrins of free-ranging rhesus macaques of Cayo Santiago, Macaca mulatta (Zimmerman 1780). Am. J. Phys. Anthropol. 1974, 41:217-232.
    • (1974) Am. J. Phys. Anthropol. , vol.41 , pp. 217-232
    • Buettner-Janusch, J.1    Mason, G.A.2    Buettner-Janusch, V.3    Sade, D.S.4
  • 47
    • 40949114087 scopus 로고
    • History
    • Academic Press, San Diego, B.T. Bennett, C.R. Abee, R. Hendrickson (Eds.)
    • Johnsen D.O. History. Nonhuman Primates in Biomedical Research 1995, 1-12. Academic Press, San Diego. B.T. Bennett, C.R. Abee, R. Hendrickson (Eds.).
    • (1995) Nonhuman Primates in Biomedical Research , pp. 1-12
    • Johnsen, D.O.1
  • 49
    • 0017861793 scopus 로고
    • Blood group antigens and the population genetics of Macaca mulatta on Cayo Santiago: I. Genetic differentiation of social groups
    • Duggleby C. Blood group antigens and the population genetics of Macaca mulatta on Cayo Santiago: I. Genetic differentiation of social groups. Am. J. Phys. Anthropol. 1978, 48:35-40.
    • (1978) Am. J. Phys. Anthropol. , vol.48 , pp. 35-40
    • Duggleby, C.1


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