Potential candidate genes for improving rice disease resistance

Rice

Volumn 3, Issue 1, 2010, Pages 56-71

  Delteil, Amandine ^a   Zhang, Jie ^b   Lessard, Philippe ^c   Morel, Jean Benoit ^a  

^a CIRAD   (France)

^b Shanghai Medipharm Biotech Co Ltd   (China)

^c Limagrain China ^*  (China)

Author keywords

Disease resistance; Rice; Transgenic plant

Indexed keywords

BACTERIA (MICROORGANISMS); MAGNAPORTHE; MAGNAPORTHE ORYZAE; XANTHOMONAS; XANTHOMONAS ORYZAE PV. ORYZAE;

EID: 80055027860     PISSN: 19398425     EISSN: 19398433     Source Type: Journal    
DOI: 10.1007/s12284-009-9035-x     Document Type: Review

References (98)

1. Bai Y, Pavan S, Zheng Z, Zappel NF, Reinstädler A, Lotti C, et al. Naturally occurring broad-spectrum powdery mildew resistance in a Central American tomato accession is caused by loss of Mlo function. Mol Plant Microbe Interact. 2008;21(1):30-9.
2. Ballini E, Morel J-B, Droc Gt, Price A, Courtois B, Notteghem J-L, et al. A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Mol Plant Microbe Interact. 2008;21(7):859-68.
3. Ballini E, Vergne E, Tharreau D, Nottéghem JL, Morel JB. ARCHIPELAGO: towards bridging the gap between molecular and genetic information in rice blast disease resistance. In: Wang GL, Valent B, editors. Advances in genetics, genomics and control of rice blast disease. Berlin: Springer; 2009. p. 417-25.
4. Campbell M, Fitzgerald H, Ronald P. Engineering pathogen resistance in crop plants. Transgenic Res. 2002;11(6):599-613.
5. Cao H, Li X, Dong X. Generation of broad-spectrum disease resistance by overexpression of an essential regulatory gene in systemic acquired resistance. Proc Natl Acad Sci USA. 1998;95(11):6531-6.
6. Chern MS, Fitzgerald HA, Yadav RC, Canlas PE, Dong XN, Ronald PC. Evidence for a disease-resistance pathway in rice similar to the NPR1-mediated signaling pathway in Arabidopsis. Plant J. 2001;27(2):101-13.
7. Chern M, Fitzgerald HA, Canlas PE, Navarre DA, Ronald PC. Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol Plant Microbe Interact. 2005;18(6):511-20.
8. Cheung M-Y, Zeng N-Y, Tong S-W, Li W-YF, Xue Y, Zhao K-J, et al. Constitutive expression of a rice GTPase-activating protein induces defense responses. New Phytol. 2008;179(2):530-45.
9. Chujo T, Takai R, Akimoto-Tomiyama C, Ando S, Minami E, Nagamura Y, et al. Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression. 2007;1769(7-8):497-505.
10. Coca M, Bortolotti C, Rufat M, Peñas G, Eritja R, Tharreau D, et al. Transgenic rice plants expressing the antifungal AFP protein from Aspergillus giganteus show enhanced resistance to the rice blast fungus Magnaporthe grisea. Plant Mol Biol. 2004;54 (2):245-59.
11. Coca M, Peñas G, Gómez J, Campo S, Bortolotti C, Messeguer J, et al. Enhanced resistance to the rice blast fungus Magnaporthe grisea conferred by expression of a cecropin A gene in transgenic rice. Planta. 2006;223(3):392-406.
12. Consonni C, Humphry ME, Hartmann HA, Livaja M, Durner J, Westphal L, et al. Conserved requirement for a plant host cell protein in powdery mildew pathogenesis. Nat Genet. 2006;38 (6):716-20.
13. Correa-Victoria FJ, Tharreau D, Martinez C, Vales M, Escobar F, Prado G, et al. Studies on the rice blast pathogen, resistance genes, and implications for breeding for durable blast resistance in Colombia. In: Kawasaki S, editor. Rice blast: interaction and control. Dordrecht: Kluwer; 2004. p. 215-27.
14. Dai S, Wei X, Alfonso AA, Pei L, Duque UG, Zhang Z, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc Natl Acad Sci USA. 2008;105(52):21012-6.
15. Datta K, Baisakh N, Maung T, Thet KM, Tu J, Datta S. Pyramiding transgenes for multiple resistance in rice against bacterial blight, yellow stem borer and sheath blight. Theor Appl Genet. 2002;106(1):1-8.
16. Domingo C, Andres F, Tharreau D, Iglesias DJ, Talon M. Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice. Mol Plant Microbe Interact. 2009;22(2):201-10.
17. Ekengren SK, Liu Y, Schiff M, Dinesh-Kumar SP, Martin GB. Two MAPK cascades, NPR1, and TGA transcription factors play a role in Pto-mediated disease resistance in tomato. Plant J. 2003;36(6):905-17.
18. Eulgem T. Regulation of the Arabidopsis defense transcriptome. Trends Plant Sci. 2005;10(2):71-8.
19. Fitzgerald HA, Chern M-S, Navarre R, Ronald PC. Overexpression of (At)NPR1 in rice leads to a BTH-and environment-induced lesion-mimic/cell death phenotype. Mol Plant Microbe Interact. 2004;17(2):140-51.
20. Flor HH. Inheritance of pathogenicity in Melampsora lini. Phytopathology. 1942;32:653-69.
21. Fukuoka S, Saka N, Koga H, Ono K, Shimizu T, Ebana K, et al. Loss of function of a proline-containing protein confers durable disease resistance in rice. Science. 2009;325(5943):998-1001.
22. Gomez-Ariza J, Campo S, Rufat M, Estop à M, Messeguer J, Segundo BS, et al. Sucrose-mediated priming of plant defense responses and broad-spectrum disease resistance by overexpression of the maize pathogenesis-related PRms protein in rice plants. Mol Plant Microbe Interact. 2007;20(7):832-42.
23. Greenberg JT, Yao N. The role and regulation of programmed cell death in plant-pathogen interactions. Cell Microbiol. 2004;6 (3):201-11.
24. Hückelhoven R. Cell wall associated mechanisms of disease resistance and susceptibility. Annu Rev Phytopathol. 2007;45(1):101-27.
25. Hammond-Kosack KE, Parker JE. Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Curr Opin Biotechnol. 2003;14(2):177-93.
26. Itoh Y, Takahashi K, Takizawa H, Nikaidou N, Tanaka H, Nishihashi H, et al. Family 19 chitinase of Streptomyces griseus HUT6037 increases plant resistance to the fungal disease. Biosci, Biotechnol Biochem. 2003;67(4):847-55.
27. Jha S, Tank H, Prasad B, Chattoo B. Expression of Dm-AMP1 in rice confers resistance to Magnaporthe oryzae and Rhizoctonia solani. Transgenic Res. 2009;18(1):59-69.
28. Jiang CJ, Shimono M, Maeda S, Inoue H, Mori M, Hasegawa M, et al. Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice. Mol Plant Microbe Interact. 2009;22(7):820-9.
29. Jones JDG, Dangl JL. The plant immune system. Nature. 2006;444 (7117):323-9.
30. Juge N. Plant protein inhibitors of cell wall degrading enzymes. Trends Plant Sci. 2006;11(7):359-67.
31. Jwa N-S, Agrawal GK, Tamogami S, Yonekura M, Han O, Iwahashi H, et al. Role of defense/stress-related marker genes, proteins and secondary metabolites in defining rice self-defense mechanisms. Plant Physiol Biochem. 2006;44(5-6):261-73.
32. Kawasaki T, Henmi K, Ono E, Hatakeyama S, Iwano M, Satoh H, et al. The small GTP-binding protein Rac is a regulator of cell death in plants. Proc Natl Acad Sci USA. 1999;96(19):10922-6.
33. Khush G. What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol Biol. 2005;59(1):1-6.
34. Khush GS. Jena, KK. Current status and future prospects for research on blast resistance in rice (Oryza sativa L.). In: Wang GL, Valent B, editors. Advances in genetics, genomics and control of rice blast disease. Berlin: Springer; 2009. p. 1-10.
35. Kim J-K, Jang I-C, Wu R, Zuo W-N, Boston RS, Lee Y-H, et al. Coexpression of a modified maize ribosome-inactivating protein and a rice basic chitinase gene in transgenic rice plants confers enhanced resistance to sheath blight. Transgenic Res. 2003;12 (4):475-84.
36. Kouassi NK, Chen L, Siré C, Bangratz-Reyser M, Beachy RN, Fauquet CM, et al. Expression of rice yellow mottle virus coat protein enhances virus infection in transgenic plants. Arch Virol. 2006;151(11):2111-22.
37. Krishnamurthy K, Balconi C, Sherwood JE, Giroux MJ. Wheat puroindolines enhance fungal disease resistance in transgenic rice. Mol Plant Microbe Interact. 2001;14(10):1255-60.
38. Lee SW, Han SW, Sririyanum M, Park CJ, Seo YS, Ronald PC. A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity. Science. 2009;326(5954):850-3.
39. Li H, Zhou SY, Zhao WS, Su SC, Peng YL. A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance. Plant Mol Biol. 2009;69(3):337-46.
40. Liu XQ, Bai XQ, Wang XJ, Chu CC. OsWRKY71, a rice transcription factor, is involved in rice defense response. J Plant Physiol. 2007;164(8):969-79.
41. Lorrain S, Vailleau F, Balagué C, Roby D. Lesion mimic mutants: keys for deciphering cell death and defense pathways in plants? Trends Plant Sci. 2003;8(6):263-71.
42. Ma JF, Yamaji N. Silicon uptake and accumulation in higher plants. Trends Plant Sci. 2006;11(8):392-7.
43. Mader JS, Hoskin DW. Cationic antimicrobial peptides as novel cytotoxic agents for cancer treatment. Expert Opin Investig Drugs. 2006;15(8):933-46.
44. Makandar R, Essig JS, Schapaugh MA, Trick HN, Shah J. Genetically engineered resistance to fusarium head blight in wheat by expression of Arabidopsis NPR1. Mol Plant Microbe Interact. 2006;19(2):123-9.
45. Maruthasalam S, Kalpana K, Kumar K, Loganathan M, Poovannan K, Raja J, et al. Pyramiding transgenic resistance in elite indica rice cultivars against the sheath blight and bacterial blight. Plant Cell Rep. 2007;26(6):791-804.
46. Mei CS, Qi M, Sheng GY, Yang YN. Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection. Mol Plant Microbe Interact. 2006;19(10):1127-37.
47. Mishra NS, Tuteja R, Tuteja N. Signaling through MAP kinase networks in plants. Arch Biochem Biophys. 2006;452(1):55-68.
48. Mitsuhara I, Iwai T, Seo S, Yanagawa Y, Kawahigasi H, Hirose S, et al. Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180). Mol Gen Genomics. 2008;279 (4):415-27.
49. Morrissey JP, Osbourn AE. Fungal resistance to plant antibiotics as a mechanism of pathogenesis. Microbiol Mol Biol Rev. 1999;63 (3):708-24.
50. Nakashima K, Tran L-SP, Nguyen DV, Fujita M, Maruyama K, Todaka D, et al. Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J. 2007;51(4):617-30.
51. Nishizawa Y, Saruta M, Nakazono K, Nishio Z, Soma M, Yoshida T, et al. Characterization of transgenic rice plants over-expressing the stress-inducible β-glucanase gene Gns1. Plant Mol Biol. 2003;51(1):143-52.
52. Noutoshi Y, Ito T, Seki M, Nakashita H, Yoshida S, Marco Y, et al. A single amino acid insertion in the WRKY domain of the Arabidopsis TIR-NBS-LRR-WRKY-type disease resistance protein SLH1 (sensitive to low humidity 1) causes activation of defense responses and hypersensitive cell death. Plant J. 2005;43 (6):873-88.
53. Ono E, Wong HL, Kawasaki T, Hasegawa M, Kodama O, Shimamoto K. Essential role of the small GTPase Rac in disease resistance of rice. Proc Natl Acad Sci USA. 2001;98(2):759-64.
54. Pandey SP, Somssich IE. The role of WRKY transcription factors in plant immunity. Plant Physiol. 2009;150(4):1648-55.
55. Peng H, Zhang Q, Li Y, Lei C, Zhai Y, Sun X, et al. A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance. Planta. 2009;230(2):377-85.
56. Peterhänsel C, Lahaye T. Be fruitful and multiply: gene amplification inducing pathogen resistance. Trends Plant Sci. 2005;10(6):257-60.
57. Peters RJ. Uncovering the complex metabolic network underlying diterpenoid phytoalexin biosynthesis in rice and other cereal crop plants. Phytochemistry. 2006;67(21):2307-17.
58. Petersen M, Brodersen P, Naested H, Andreasson E, Lindhart U, Johansen B, et al. Arabidopsis MAP kinase 4 negatively regulates systemic acquired resistance. Cell. 2000;103(7):1111-20.
59. Pinto YM, Kok RA, Baulcombe DC. Resistance to rice yellow mottle virus (RYMV) in cultivated African rice varieties containing RYMV transgenes. Nat Biotechnol. 1999;17(7):702-7.
60. Qiu D, Xiao J, Ding X, Xiong M, Cai M, Cao Y, et al. OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate-and jasmonate-dependent signaling. Mol Plant Microbe Interact. 2007;20(5):492-9.
61. Qiu D, Mao J, Yang X, Zeng H. Expression of an elicitor-encoding gene from Magnaporthe grisea enhances resistance against blast disease in transgenic rice. Plant Cell Rep. 2009a;28(6):925-33.
62. Qiu D, Xiao J, Xie W, Cheng H, Li X, Wang S. Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice. BMC Plant Biol. 2009b;9:74.
63. Qu L-J, Chen J, Liu M, Pan N, Okamoto H, Lin Z, et al. Molecular cloning and functional analysis of a novel type of Bowman-Birk inhibitor gene family in rice. Plant Physiol. 2003;133 (2):560-70.
64. Qu SH, Liu GF, Zhou B, Bellizzi M, Zeng LR, Dai LY, et al. The broad-spectrum blast resistance gene Pi9 encodes a nucleotidebinding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics. 2006;172(3):1901-14.
65. Quilis J, Penas G, Messeguer J, Brugidou C, Segundo BS. The Arabidopsis AtNPR1 inversely modulates defense responses against fungal, bacterial, or viral pathogens while conferring hypersensitivity to abiotic stresses in transgenic rice. Mol Plant Microbe Interact. 2008;21(9):1215-31.
66. Savary S, Willocquet L, Elazegui FA, Castilla NP, Teng PS. Rice pest constraints in tropical Asia: quantification of yield losses due to rice pests in a range of production situations. Plant Dis. 2000;84 (3):357-69.
67. Sawada K, Hasegawa M, Tokuda L, Kameyama J, Kodama O, Kohchi T, et al. Enhanced resistance to blast fungus and bacterial blight in transgenic rice constitutively expressing OsSBP, a rice homologue of mammalian selenium-binding proteins. Biosci, Biotechnol, Biochem. 2004;68(4):873-80.
68. Schaffrath U, Mauch F, Freydl E, Schweizer P, Dudler R. Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea. Plant Mol Biol. 2000;43(1):59-66.
69. Shah J, Raghupathy V, Veluthambi K. Enhanced sheath blight resistance in transgenic rice expressing an endochitinase gene from Trichoderma virens. Biotechnol Lett. 2009;31(2):239-44.
70. Shao M, Wang JS, Dean RA, Lin YJ, Gao XW, Hu SJ. Expression of a harpin-encoding gene in rice confers durable nonspecific resistance to Magnaporthe grisea. Plant Biotechnol J. 2008; 6(1):73-81.
71. Shimono M, Sugano S, Nakayama A, Jiang CJ, Ono K, Toki S, et al. Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance. Plant Cell. 2007;19(6):2064-76.
72. Silverstein KAT, Moskal Jr WA, Wu HC, Underwood BA, Graham MA, Town CD, et al. Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 2007;51(2):262-80.
73. Skamnioti P, Gurr SJ. Magnaporthe grisea cutinase2 mediates appressorium differentiation and host penetration and is required for full virulence. Plant Cell. 2007;19(8):2674-89.
74. Song FM, Goodman RM. OsBIMK1, a rice MAP kinase gene involved in disease resistance responses. Planta. 2002;215(6):997-1005.
75. Takakura Y, Che FS, Ishida Y, Tsutsumi F, Kurotani K, Usami S, et al. Expression of a bacterial flagellin gene triggers plant immune responses and confers disease resistance in transgenic rice plants. Mol Plant Pathol. 2008;9(4):525-9.
76. Takase K, Hagiwara K, Onodera H, Nishizawa Y, Ugaki M, Omura T, et al. Constitutive expression of human lactoferrin and its N-lobe in rice plants to confer dideade resistance. Biochem Cell Biology. 2005;83(2):239-49.
77. Tao Z, Liu H, Qiu D, Zhou Y, Li X, Xu C, et al. A pair of allelic WRKY genes play opposite role in rice-bacteria interactions. Plant Physiol. 2009;151(2):936-48.
78. Thao NP, Chen L, Nakashima A, Hara SI, Umemura K, Takahashi A, et al. RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice. Plant Cell. 2007;19(12):4035-45.
79. Tian D, Yin Z. Constitutive heterologous expression of avrXa27 in rice containing the R gene Xa27 confers enhanced resistance to compatible Xanthomonas oryzae strains. Mol Plant Pathol. 2009;10(1):29-39.
80. Till B, Cooper J, Tai T, Colowit P, Greene E, Henikoff S, et al. Discovery of chemically induced mutations in rice by TILLING. BMC Plant Biol. 2007;7(1):19.
81. Toki S, Hara N, Ono K, Onodera H, Tagiri A, Oka S, et al. Early infection of scutellum tissue with Agrobacterium allows highspeed transformation of rice. Plant J. 2006;47(6):969-76.
82. Tu J, Datta K, Khush GS, Zhang Q, Datta SK. Field performance of Xa21 transgenic indica rice (Oryza sativa L.): IR72. TAG. Theor Appl Genet. 2000;101(1):15-20.
83. van Loon LC, Rep M, Pieterse CMJ. Significance of inducible defense-related proteins in infected plants. Annu Rev Phytopathol. 2006;44(1):135-62.
84. Vergne E, Ballini E, Droc G, Tharreau D, Nottéghem J-L, Morel J-B. ARCHIPELAGO: a dedicated resource for exploiting past, present, and future genomic data on disease resistance regulation in rice. Mol Plant Microbe Interact. 2008;21(7):869-78.
85. Wang GN, Ding XH, Yuan M, Qiu DY, Li XH, Xu CG, et al. Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation. Plant Mol Biol. 2006;60(3):437-49.
86. White FF, Yang B. Host and pathogen factors controlling the rice-Xanthomonas oryzae interaction. Plant Physiol. 2009;150 (4):1677-86.
87. Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K. Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice. Plant Physiol. 2004;135(3):1447-56.
88. Xiao W, Liu H, Li Y, Li X, Xu C, Long M, et al. A rice gene of de novo origin negatively regulates pathogen-induced defense response. PLoS ONE. 2009;4(2):e4603.
89. Xiong LZ, Yang YN. Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. Plant Cell. 2003;15(3):745-59.
90. Yamaguchi T, Kuroda M, Yamakawa H, Ashizawa T, Hirayae K, Kurimoto L, et al. Suppression of a phospholipase D gene, OsPLD beta 1, activates defense responses and increases disease resistance in rice. Plant Physiol. 2009;150(1):308-19.
91. Ye R, Huang H, Yang Z, Chen T, Liu L, Li X, et al. Development of insect-resistant transgenic rice with Cry1C*-free endosperm. Pest Manag Sci. 2009;65(9):1015-20.
92. Yin Z, Chen J, Zeng L, Goh M, Leung H, Khush GS, et al. Characterizing rice lesion mimic mutants and identifying a mutant with broad-spectrum resistance to rice blast and bacterial blight. Mol Plant Microbe Interact. 2000;13(8):869-76.
93. Yuan YX, Zhong SH, Li Q, Zhu ZR, Lou YG, Wang LY, et al. Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility. Plant Biotechnol J. 2007;5(2):313-24.
94. Zeng LR, Qu SH, Bordeos A, Yang CW, Baraoidan M, Yan HY, et al. Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity. Plant Cell. 2004;16 (10):2795-808.
95. Zhang J, Peng YL, Guo ZJ. Constitutive expression of pathogeninducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants. Cell Research. 2008;18(4):508-21.
96. Zhao B, Lin X, Poland J, Trick H, Leach J, Hulbert S. A maize resistance gene functions against bacterial streak disease in rice. Proc Natl Acad Sci USA. 2005;102(43):15383-8.
97. Zhu Y, Chen H, Fan J, Wang Y, Li Y, Chen J, et al. Genetic diversity and disease control in rice. Nature. 2000;406(6797):718-22.
98. Zhu H, Xu X, Xiao G, Yuan L, Li B. Enhancing disease resistances of super hybrid rice with four antifungal genes. Sci China Ser C: Life Sci. 2007;50(1):31-9.