-
1
-
-
34548792911
-
Marine viruses-Major players in the global ecosystem
-
Suttle, C.A. Marine viruses-Major players in the global ecosystem. Nat. Rev. Microbiol. 2007, 5, 801-812.
-
(2007)
Nat. Rev. Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
2
-
-
25144506135
-
Viruses in the sea
-
Suttle, C.A. Viruses in the sea. Nature 2005, 437, 356-361.
-
(2005)
Nature
, vol.437
, pp. 356-361
-
-
Suttle, C.A.1
-
3
-
-
23944494203
-
Crystal ball. The viriosphere: The greatest biological diversity on earth and driver of global processes
-
Suttle, C. Crystal ball. The viriosphere: The greatest biological diversity on earth and driver of global processes. Environ. Microbiol. 2005, 7, 481-482.
-
(2005)
Environ. Microbiol
, vol.7
, pp. 481-482
-
-
Suttle, C.1
-
4
-
-
58549092812
-
Iapv, a bee-affecting virus associated with colony collapse disorder can be silenced by dsRNA ingestion
-
Maori, E.; Paldi, N.; Shafir, S.; Kalev, H.; Tsur, E.; Glick, E.; Sela, I. Iapv, a bee-affecting virus associated with colony collapse disorder can be silenced by dsRNA ingestion. Insect Mol. Biol. 2009, 18, 55-60.
-
(2009)
Insect Mol. Biol
, vol.18
, pp. 55-60
-
-
Maori, E.1
Paldi, N.2
Shafir, S.3
Kalev, H.4
Tsur, E.5
Glick, E.6
Sela, I.7
-
5
-
-
0032976453
-
Assessment of the application of baculoviruses for control of lepidoptera
-
Moscardi, F. Assessment of the application of baculoviruses for control of lepidoptera. Annu. Rev. Entomol. 1999, 44, 257-289.
-
(1999)
Annu. Rev. Entomol
, vol.44
, pp. 257-289
-
-
Moscardi, F.1
-
6
-
-
0032969396
-
Mechanisms of arthropod transmission of plant and animal viruses
-
Gray, S.M.; Banerjee, N. Mechanisms of arthropod transmission of plant and animal viruses. Microbiol. Mol. Biol. Rev. 1999, 63, 128-148.
-
(1999)
Microbiol. Mol. Biol. Rev
, vol.63
, pp. 128-148
-
-
Gray, S.M.1
Banerjee, N.2
-
7
-
-
79960630410
-
Opportunities and challenges for the baculovirus expression system
-
van Oers, M.M. Opportunities and challenges for the baculovirus expression system. J. Invertebr. Pathol. 2011, 107, S3-S15.
-
(2011)
J. Invertebr. Pathol
, vol.107
-
-
van Oers, M.M.1
-
8
-
-
80055002325
-
-
Elsevier: San Diego, CA, USA
-
Bonning, B.C. Insect Viruses: Biotechnological Applications; Elsevier: San Diego, CA, USA, 2006; Volume 68, p. 532.
-
(2006)
Insect Viruses: Biotechnological Applications
, vol.68
, pp. 532
-
-
Bonning, B.C.1
-
9
-
-
78651512436
-
The good viruses: Viral mutualistic symbioses
-
Roossinck, M.J. The good viruses: Viral mutualistic symbioses. Nat. Rev. Microbiol. 2011, 9, 99-108.
-
(2011)
Nat. Rev. Microbiol
, vol.9
, pp. 99-108
-
-
Roossinck, M.J.1
-
10
-
-
0035066909
-
Innate immunity and its evasion and suppression by hymenopteran endoparasitoids
-
Schmidt, O.; Theopold, U.; Strand, M. Innate immunity and its evasion and suppression by hymenopteran endoparasitoids. Bioessays 2001, 23, 344-351.
-
(2001)
Bioessays
, vol.23
, pp. 344-351
-
-
Schmidt, O.1
Theopold, U.2
Strand, M.3
-
11
-
-
66649125743
-
Densovirus induces winged morphs in asexual clones of the rosy apple aphid, dysaphis plantaginea
-
Ryabov, E.V.; Keane, G.; Naish, N.; Evered, C.; Winstanley, D. Densovirus induces winged morphs in asexual clones of the rosy apple aphid, dysaphis plantaginea. Proc. Natl. Acad. Sci. U. S. A. 2009, 106, 8465-8470.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A
, vol.106
, pp. 8465-8470
-
-
Ryabov, E.V.1
Keane, G.2
Naish, N.3
Evered, C.4
Winstanley, D.5
-
12
-
-
77249155344
-
Facultative symbionts in aphids and the horizontal transfer of ecologically important traits
-
Oliver, K.M.; Degnan, P.H.; Burke, G.R.; Moran, N.A. Facultative symbionts in aphids and the horizontal transfer of ecologically important traits. Annu. Rev. Entomol. 2010, 55, 247-266.
-
(2010)
Annu. Rev. Entomol
, vol.55
, pp. 247-266
-
-
Oliver, K.M.1
Degnan, P.H.2
Burke, G.R.3
Moran, N.A.4
-
13
-
-
69249152571
-
Bacteriophages encode factors required for protection in a symbiotic mutualism
-
Oliver, K.M.; Degnan, P.H.; Hunter, M.S.; Moran, N.A. Bacteriophages encode factors required for protection in a symbiotic mutualism. Science 2009, 325, 992-994.
-
(2009)
Science
, vol.325
, pp. 992-994
-
-
Oliver, K.M.1
Degnan, P.H.2
Hunter, M.S.3
Moran, N.A.4
-
14
-
-
78649797225
-
Arbovirus detection in insect vectors by rapid, high-throughput pyrosequencing
-
Bishop-Lilly, K.A.; Turell, M.J.; Willner, K.M.; Butani, A.; Nolan, N.M.; Lentz, S.M.; Akmal, A.; Mateczun, A.; Brahmbhatt, T.N.; Sozhamannan, S.; et al. Arbovirus detection in insect vectors by rapid, high-throughput pyrosequencing. PLoS Negl. Trop. Dis. 2010, 4, e878.
-
(2010)
PLoS Negl. Trop. Dis
, vol.4
-
-
Bishop-Lilly, K.A.1
Turell, M.J.2
Willner, K.M.3
Butani, A.4
Nolan, N.M.5
Lentz, S.M.6
Akmal, A.7
Mateczun, A.8
Brahmbhatt, T.N.9
Sozhamannan, S.10
-
15
-
-
0035545102
-
Discovering new insect viruses: Whitefly iridovirus (homoptera: Aleyrodidae: Bemisia tabaci)
-
Hunter, W.B.; Patte, C.P.; Sinisterra, X.H.; Achor, D.S.; Funk, C.J.; Polston, J.E. Discovering new insect viruses: Whitefly iridovirus (homoptera: Aleyrodidae: Bemisia tabaci). J. Invertebr. Pathol. 2001, 78, 220-225.
-
(2001)
J. Invertebr. Pathol
, vol.78
, pp. 220-225
-
-
Hunter, W.B.1
Patte, C.P.2
Sinisterra, X.H.3
Achor, D.S.4
Funk, C.J.5
Polston, J.E.6
-
16
-
-
0034762566
-
Replication of insect iridescent virus 6 in a whitefly cell line
-
Funk, C.J.; Hunter, W.B.; Achor, D.S. Replication of insect iridescent virus 6 in a whitefly cell line. J. Invertebr. Pathol. 2001, 77, 144-146.
-
(2001)
J. Invertebr. Pathol
, vol.77
, pp. 144-146
-
-
Funk, C.J.1
Hunter, W.B.2
Achor, D.S.3
-
17
-
-
84855197858
-
An insect nidovirus emerging from a primary tropical rainforest
-
Zirkel, F.; Kurth, A.; Quan, P.L.; Briese, T.; Ellerbrok, H.; Pauli, G.; Leendertz, F.H.; Lipkin, W.I.; Ziebuhr, J.; Drosten, C.; et al. An insect nidovirus emerging from a primary tropical rainforest. MBio 2011, 2, e00077-11.
-
(2011)
MBio
, vol.2
-
-
Zirkel, F.1
Kurth, A.2
Quan, P.L.3
Briese, T.4
Ellerbrok, H.5
Pauli, G.6
Leendertz, F.H.7
Lipkin, W.I.8
Ziebuhr, J.9
Drosten, C.10
-
18
-
-
79958783219
-
Isolation and characterization of a novel alphanodavirus
-
Bai, H.; Wang, Y.; Li, X.; Mao, H.; Li, Y.; Han, S.; Shi, Z.; Chen, X. Isolation and characterization of a novel alphanodavirus. Virol. J. 2011, 8, 311.
-
(2011)
Virol. J
, vol.8
, pp. 311
-
-
Bai, H.1
Wang, Y.2
Li, X.3
Mao, H.4
Li, Y.5
Han, S.6
Shi, Z.7
Chen, X.8
-
19
-
-
70449130792
-
Modern uses of electron microscopy for detection of viruses
-
Goldsmith, C.S.; Miller, S.E. Modern uses of electron microscopy for detection of viruses. Clin. Microbiol. Rev. 2009, 22, 552-563.
-
(2009)
Clin. Microbiol. Rev
, vol.22
, pp. 552-563
-
-
Goldsmith, C.S.1
Miller, S.E.2
-
20
-
-
0017337693
-
Broccoli necrotic yellows virus in cauliflower and in the aphid, brevicoryne brassicae l
-
Garrett, R.G.; O'Loughlin, G.T. Broccoli necrotic yellows virus in cauliflower and in the aphid, brevicoryne brassicae l. Virology 1977, 76, 653-663.
-
(1977)
Virology
, vol.76
, pp. 653-663
-
-
Garrett, R.G.1
O'Loughlin, G.T.2
-
21
-
-
0012519171
-
Morphological identification of virus like particles in the corn leaf aphid, rhopalosiphum maidis (fitch.)
-
Parrish, W.B.; Briggs, J.D. Morphological identification of virus like particles in the corn leaf aphid, rhopalosiphum maidis (fitch.). J. Invertebr. Pathol. 1966, 8, 122-123.
-
(1966)
J. Invertebr. Pathol
, vol.8
, pp. 122-123
-
-
Parrish, W.B.1
Briggs, J.D.2
-
22
-
-
0039910690
-
The purification of virus like particles from the aphid myzus persicae
-
Peters, D. The purification of virus like particles from the aphid myzus persicae. Virology 1965, 26, 159-161.
-
(1965)
Virology
, vol.26
, pp. 159-161
-
-
Peters, D.1
-
23
-
-
0029199793
-
Pathogenicity of a baculovirus infection causing white spot syndrome in cultured penaeid shrimp in taiwan
-
Chou, H.Y.; Huang, C.Y.; Wang, C.H.; Chiang, H.C.; Lo, C.F. Pathogenicity of a baculovirus infection causing white spot syndrome in cultured penaeid shrimp in taiwan. Dis. Aquat. Org. 1995, 23, 165-173.
-
(1995)
Dis. Aquat. Org
, vol.23
, pp. 165-173
-
-
Chou, H.Y.1
Huang, C.Y.2
Wang, C.H.3
Chiang, H.C.4
Lo, C.F.5
-
25
-
-
0014894441
-
Some implications of a morphologically oriented classification of viruses
-
Almeida, J.D.; Waterson, A.D. Some implications of a morphologically oriented classification of viruses. Arch. Gesamte Virusforsch 1970, 32, 66-72.
-
(1970)
Arch. Gesamte Virusforsch
, vol.32
, pp. 66-72
-
-
Almeida, J.D.1
Waterson, A.D.2
-
26
-
-
0001216176
-
A study by means of the electron microscope of the reaction between tobacco mosaic virus and its antiserum
-
Anderson, T.F.; Stanley, W.M. A study by means of the electron microscope of the reaction between tobacco mosaic virus and its antiserum. J. Biol. Chem. 1941, 139, 339-344.
-
(1941)
J. Biol. Chem
, vol.139
, pp. 339-344
-
-
Anderson, T.F.1
Stanley, W.M.2
-
27
-
-
43249131620
-
Infectious genomic RNA of rhopalosiphum padi virus transcribed in vitro from a full-length cdna clone
-
Boyapalle, S.; Beckett, R.J.; Pal, N.; Miller, W.A.; Bonning, B.C. Infectious genomic RNA of rhopalosiphum padi virus transcribed in vitro from a full-length cdna clone. Virology 2008, 375, 401-411.
-
(2008)
Virology
, vol.375
, pp. 401-411
-
-
Boyapalle, S.1
Beckett, R.J.2
Pal, N.3
Miller, W.A.4
Bonning, B.C.5
-
28
-
-
49849094562
-
Expressed sequence tags from the red imported fire ant, solenopsis invicta: Annotation and utilization for discovery of viruses
-
Valles, S.M.; Strong, C.A.; Hunter, W.B.; Dang, P.M.; Pereira, R.M.; Oi, D.H.; Williams, D.F. Expressed sequence tags from the red imported fire ant, solenopsis invicta: Annotation and utilization for discovery of viruses. J. Invertebr. Pathol. 2008, 99, 74-81.
-
(2008)
J. Invertebr. Pathol
, vol.99
, pp. 74-81
-
-
Valles, S.M.1
Strong, C.A.2
Hunter, W.B.3
Dang, P.M.4
Pereira, R.M.5
Oi, D.H.6
Williams, D.F.7
-
29
-
-
33744899358
-
Genome sequence and molecular characterization of homalodisca coagulata virus-1, a novel virus discovered in the glassy-winged sharpshooter (hemiptera: Cicadellidae)
-
Hunnicutt, L.E.; Hunter, W.B.; Cave, R.D.; Powell, C.A.; Mozoruk, J.J. Genome sequence and molecular characterization of homalodisca coagulata virus-1, a novel virus discovered in the glassy-winged sharpshooter (hemiptera: Cicadellidae). Virology 2006, 350, 67-78.
-
(2006)
Virology
, vol.350
, pp. 67-78
-
-
Hunnicutt, L.E.1
Hunter, W.B.2
Cave, R.D.3
Powell, C.A.4
Mozoruk, J.J.5
-
30
-
-
33750275584
-
Molecular analysis of capsid protein of homalodisca coagulata virus-1, a new leafhopper-infecting virus from the glassy-winged sharpshooter, homalodisca coagulata
-
Hunter, W.B.; Katsar, C.S.; Chaparro, J.X. Molecular analysis of capsid protein of homalodisca coagulata virus-1, a new leafhopper-infecting virus from the glassy-winged sharpshooter, homalodisca coagulata. J. Insect Sci. 2006, 6, 1-10.
-
(2006)
J. Insect Sci
, vol.6
, pp. 1-10
-
-
Hunter, W.B.1
Katsar, C.S.2
Chaparro, J.X.3
-
31
-
-
34147122252
-
Phytoreovirus-like sequences isolated from salivary glands of the glassy-winged sharpshooter homolodisca vitripennis (hemiptera: Cicadellidae)
-
Katsar, C.S.; Hunter, W.B.; Sinisterra, X.H. Phytoreovirus-like sequences isolated from salivary glands of the glassy-winged sharpshooter homolodisca vitripennis (hemiptera: Cicadellidae). Fla. Entomol. 2007, 90, 196-203.
-
(2007)
Fla. Entomol
, vol.90
, pp. 196-203
-
-
Katsar, C.S.1
Hunter, W.B.2
Sinisterra, X.H.3
-
32
-
-
75649088565
-
Data mining cdnas reveals three new single stranded RNA viruses in nasonia (hymenoptera: Pteromalidae
-
Oliveira, D.C.; Hunter, W.B.; Ng, J.; Desjardins, C.A.; Dang, P.M.; Werren, J.H. Data mining cdnas reveals three new single stranded RNA viruses in nasonia (hymenoptera: Pteromalidae). Insect Mol. Biol. 2010, 19, 99-107.
-
(2010)
Insect Mol. Biol
, vol.19
, pp. 99-107
-
-
Oliveira, D.C.1
Hunter, W.B.2
Ng, J.3
Desjardins, C.A.4
Dang, P.M.5
Werren, J.H.6
-
33
-
-
18744377158
-
Microarray-based detection and genotyping of viral pathogens
-
Wang, D.; Coscoy, L.; Zylberberg, M.; Avila, P.C.; Boushey, H.A.; Ganem, D.; DeRisi, J.L. Microarray-based detection and genotyping of viral pathogens. Proc. Natl. Acad. Sci. U. S. A. 2002, 99, 15687-15692.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A
, vol.99
, pp. 15687-15692
-
-
Wang, D.1
Coscoy, L.2
Zylberberg, M.3
Avila, P.C.4
Boushey, H.A.5
Ganem, D.6
Derisi, J.L.7
-
34
-
-
4243142644
-
Viral discovery and sequence recovery using DNA microarrays
-
Wang, D.; Urisman, A.; Liu, Y.T.; Springer, M.; Ksiazek, T.G.; Erdman, D.D.; Mardis, E.R.; Hickenbotham, M.; Magrini, V.; Eldred, J.; et al. Viral discovery and sequence recovery using DNA microarrays. PLoS Biol. 2003, 1, E2.
-
(2003)
PLoS Biol
, vol.1
-
-
Wang, D.1
Urisman, A.2
Liu, Y.T.3
Springer, M.4
Ksiazek, T.G.5
Erdman, D.D.6
Mardis, E.R.7
Hickenbotham, M.8
Magrini, V.9
Eldred, J.10
-
35
-
-
79958172988
-
Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, nosema, and crithidia
-
Runckel, C.; Flenniken, M.L.; Engel, J.C.; Ruby, J.G.; Ganem, D.; Andino, R.; Derisi, J.L. Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, nosema, and crithidia. PLoS One 2011, 6, e20656.
-
(2011)
PLoS One
, vol.6
-
-
Runckel, C.1
Flenniken, M.L.2
Engel, J.C.3
Ruby, J.G.4
Ganem, D.5
Andino, R.6
Derisi, J.L.7
-
36
-
-
37749031255
-
Next-generation sequencing transforms today's biology
-
Schuster, S.C. Next-generation sequencing transforms today's biology. Nat. Methods 2008, 5, 16-18.
-
(2008)
Nat. Methods
, vol.5
, pp. 16-18
-
-
Schuster, S.C.1
-
37
-
-
34249723655
-
Advanced sequencing technologies and their wider impact in microbiology
-
Hall, N. Advanced sequencing technologies and their wider impact in microbiology. J. Exp. Biol. 2007, 210, 1518-1525.
-
(2007)
J. Exp. Biol
, vol.210
, pp. 1518-1525
-
-
Hall, N.1
-
38
-
-
72849144434
-
Sequencing technologies - the next generation
-
Metzker, M.L. Sequencing technologies - the next generation. Nat. Rev. Genet. 2010, 11, 31-46.
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
39
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J.; Ji, H. Next-generation DNA sequencing. Nat. Biotechnol. 2008, 26, 1135-1145.
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
41
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
Cox-Foster, D.L.; Conlan, S.; Holmes, E.C.; Palacios, G.; Evans, J.D.; Moran, N.A.; Quan, P.L.; Briese, T.; Hornig, M.; Geiser, D.M.; et al. A metagenomic survey of microbes in honey bee colony collapse disorder. Science 2007, 318, 283-287.
-
(2007)
Science
, vol.318
, pp. 283-287
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
Palacios, G.4
Evans, J.D.5
Moran, N.A.6
Quan, P.L.7
Briese, T.8
Hornig, M.9
Geiser, D.M.10
-
42
-
-
79958145122
-
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes
-
Ng, T.F.; Willner, D.L.; Lim, Y.W.; Schmieder, R.; Chau, B.; Nilsson, C.; Anthony, S.; Ruan, Y.; Rohwer, F.; Breitbart, M. Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PLoS One 2011, 6, e20579.
-
(2011)
PLoS One
, vol.6
-
-
Ng, T.F.1
Willner, D.L.2
Lim, Y.W.3
Schmieder, R.4
Chau, B.5
Nilsson, C.6
Anthony, S.7
Ruan, Y.8
Rohwer, F.9
Breitbart, M.10
-
43
-
-
84988044080
-
Focus on next-generation sequencing data analysis
-
Rusk, N. Focus on next-generation sequencing data analysis. Forward. Nat. Methods 2009, 6, S1.
-
(2009)
Forward. Nat. Methods
, vol.6
-
-
Rusk, N.1
-
44
-
-
65449136284
-
Tophat: Discovering splice junctions with RNA-seq
-
Trapnell, C.; Pachter, L.; Salzberg, S.L. Tophat: Discovering splice junctions with RNA-seq. Bioinformatics 2009, 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
45
-
-
84900673832
-
-
Cutadapt. Available online, accessed on 18 June 2011
-
Cutadapt. Available online: http://code.google.com/p/cutadapt/ (accessed on 18 June 2011).
-
-
-
-
46
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F.; Gish, W.; Miller, W.M.; Eyers, E.W.; Lipman, D.J. Basic local alignment search tool. J. Mol. Biol. 1990, 215, 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.M.3
Eyers, E.W.4
Lipman, D.J.5
-
47
-
-
70449601770
-
Accurate strand-specific quantification of viral RNA
-
Plaskon, N.E.; Adelman, Z.N.; Myles, K.M. Accurate strand-specific quantification of viral RNA. PLoS One 2009, 4, e7468.
-
(2009)
PLoS One
, vol.4
-
-
Plaskon, N.E.1
Adelman, Z.N.2
Myles, K.M.3
-
48
-
-
64149123778
-
Next-generation sequencing: From basic research to diagnostics
-
Voelkerding, K.V.; Dames, S.A.; Durtschi, J.D. Next-generation sequencing: From basic research to diagnostics. Clin. Chem. 2009, 55, 641-658.
-
(2009)
Clin. Chem
, vol.55
, pp. 641-658
-
-
Voelkerding, K.V.1
Dames, S.A.2
Durtschi, J.D.3
-
49
-
-
70949102952
-
Next generation sequencing of microbial transcriptomes: Challenges and opportunities
-
van Vliet, A.H. Next generation sequencing of microbial transcriptomes: Challenges and opportunities. FEMS Microbiol. Lett. 2010, 302, 1-7.
-
(2010)
FEMS Microbiol. Lett
, vol.302
, pp. 1-7
-
-
van Vliet, A.H.1
-
50
-
-
80053348857
-
Discovering novel zoonotic viruses
-
Wang, L.F. Discovering novel zoonotic viruses. N S W Public Health Bull. 2011, 22, 113-117.
-
(2011)
N S W Public Health Bull
, vol.22
, pp. 113-117
-
-
Wang, L.F.1
-
51
-
-
80051734179
-
Application of high-throughput DNA sequencing in phytopathology
-
Studholme, D.J.; Glover, R.H.; Boonham, N. Application of high-throughput DNA sequencing in phytopathology. Annu. Rev. Phytopathol. 2011, 49, 87-105.
-
(2011)
Annu. Rev. Phytopathol
, vol.49
, pp. 87-105
-
-
Studholme, D.J.1
Glover, R.H.2
Boonham, N.3
-
52
-
-
33745513227
-
Metagenomic analysis of coastal RNA virus communities
-
Culley, A.I.; Lang, A.S.; Suttle, C.A. Metagenomic analysis of coastal RNA virus communities. Science 2006, 312, 1795-1798.
-
(2006)
Science
, vol.312
, pp. 1795-1798
-
-
Culley, A.I.1
Lang, A.S.2
Suttle, C.A.3
-
53
-
-
84900657938
-
-
Updates on programs available can be found at the following sites:, accessed on 1 August 2011
-
Updates on programs available can be found at the following sites: http://seqanswers.com/wiki/Software/list;http://www.oxfordjournals.org/our_journals/bioinformatics/nextgenerationsequencing.html;https://wiki.nbic.nl/index.php/NGS_Tools (accessed on 1 August 2011).
-
-
-
-
54
-
-
84900575412
-
-
ICTV International committee on taxonomy of viruses-Approved virus orders, families and genera. Available online:, accessed on 1 August 2011
-
ICTV International committee on taxonomy of viruses-Approved virus orders, families and genera. Available online: http://ictvonline.org/virusTaxonomy.asp?version=2009 (accessed on 1 August 2011).
-
-
-
-
55
-
-
73749085707
-
A historical review of managed honey bee populations in europe and the united states and the factors that may affect them
-
van Engelsdorp, D.; Meixner, M.D. A historical review of managed honey bee populations in europe and the united states and the factors that may affect them. J. Invertebr. Pathol. 2010, 103, S80-S95.
-
(2010)
J. Invertebr. Pathol
, vol.103
-
-
van Engelsdorp, D.1
Meixner, M.D.2
-
57
-
-
70349675587
-
Metagenomic analysis of RNA viruses in a fresh water lake
-
Djikeng, A.; Kuzmickas, R.; Anderson, N.G.; Spiro, D.J. Metagenomic analysis of RNA viruses in a fresh water lake. PLoS One 2009, 4, e7264.
-
(2009)
PLoS One
, vol.4
-
-
Djikeng, A.1
Kuzmickas, R.2
Anderson, N.G.3
Spiro, D.J.4
-
58
-
-
76249103869
-
Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs
-
Wu, Q.; Luo, Y.; Lu, R.; Lau, N.; Lai, E.C.; Li, W.X.; Ding, S.W. Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs. Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 1606-1611.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A
, vol.107
, pp. 1606-1611
-
-
Wu, Q.1
Luo, Y.2
Lu, R.3
Lau, N.4
Lai, E.C.5
Li, W.X.6
Ding, S.W.7
-
59
-
-
80055001272
-
-
Iowa State University, Ames, IA, USA. Unpublished work
-
Liu, S.; Vijayendran, D.; Bonning, B.C. Iowa State University, Ames, IA, USA. Unpublished work, 2011.
-
(2011)
-
-
Liu, S.1
Vijayendran, D.2
Bonning, B.C.3
-
60
-
-
79955547944
-
Deep sequencing of cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome
-
Chen, Y.F.; Gao, F.; Ye, X.Q.; Wei, S.J.; Shi, M.; Zheng, H.J.; Chen, X.X. Deep sequencing of cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome. Virology 2011, 414, 42-50.
-
(2011)
Virology
, vol.414
, pp. 42-50
-
-
Chen, Y.F.1
Gao, F.2
Ye, X.Q.3
Wei, S.J.4
Shi, M.5
Zheng, H.J.6
Chen, X.X.7
-
61
-
-
42449134427
-
Genome analysis of a glossina pallidipes salivary gland hypertrophy virus reveals a novel, large, double-stranded circular DNA virus
-
Abd-Alla, A.M.; Cousserans, F.; Parker, A.G.; Jehle, J.A.; Parker, N.J.; Vlak, J.M.; Robinson, A.S.; Bergoin, M. Genome analysis of a glossina pallidipes salivary gland hypertrophy virus reveals a novel, large, double-stranded circular DNA virus. J. Virol. 2008, 82, 4595-4611.
-
(2008)
J. Virol
, vol.82
, pp. 4595-4611
-
-
Abd-Alla, A.M.1
Cousserans, F.2
Parker, A.G.3
Jehle, J.A.4
Parker, N.J.5
Vlak, J.M.6
Robinson, A.S.7
Bergoin, M.8
-
62
-
-
0042364932
-
High diversity of unknown picorna-like viruses in the sea
-
Culley, A.I.; Lang, A.S.; Suttle, C.A. High diversity of unknown picorna-like viruses in the sea. Nature 2003, 424, 1054-1057.
-
(2003)
Nature
, vol.424
, pp. 1054-1057
-
-
Culley, A.I.1
Lang, A.S.2
Suttle, C.A.3
-
63
-
-
77956170809
-
RNA-based antiviral immunity
-
Ding, S.W. RNA-based antiviral immunity. Nat. Rev. Immunol. 2010, 10, 632-644.
-
(2010)
Nat. Rev. Immunol
, vol.10
, pp. 632-644
-
-
Ding, S.W.1
-
64
-
-
79960071162
-
Defense and counterdefense in the rnai-based antiviral immune system in insects
-
van Mierlo, J.T.; van Cleef, K.W.; van Rij, R.P. Defense and counterdefense in the rnai-based antiviral immune system in insects. Methods Mol. Biol. 2011, 721, 3-22.
-
(2011)
Methods Mol. Biol
, vol.721
, pp. 3-22
-
-
van Mierlo, J.T.1
van Cleef, K.W.2
van Rij, R.P.3
-
65
-
-
33645537549
-
Rnai is an antiviral immune response against a dsRNA virus in drosophila melanogaster
-
Zambon, R.A.; Vakharia, V.N.; Wu, L.P. Rnai is an antiviral immune response against a dsRNA virus in drosophila melanogaster. Cell Microbiol. 2006, 8, 880-889.
-
(2006)
Cell Microbiol
, vol.8
, pp. 880-889
-
-
Zambon, R.A.1
Vakharia, V.N.2
Wu, L.P.3
-
66
-
-
0037123630
-
Induction and suppression of RNA silencing by an animal virus
-
Li, H.; Li, W.X.; Ding, S.W. Induction and suppression of RNA silencing by an animal virus. Science 2002, 296, 1319-1321.
-
(2002)
Science
, vol.296
, pp. 1319-1321
-
-
Li, H.1
Li, W.X.2
Ding, S.W.3
-
67
-
-
33744494279
-
Essential function in vivo for dicer-2 in host defense against RNA viruses in drosophila
-
Galiana-Arnoux, D.; Dostert, C.; Schneemann, A.; Hoffmann, J.A.; Imler, J.L. Essential function in vivo for dicer-2 in host defense against RNA viruses in drosophila. Nat. Immunol. 2006, 7, 590-597.
-
(2006)
Nat. Immunol
, vol.7
, pp. 590-597
-
-
Galiana-Arnoux, D.1
Dostert, C.2
Schneemann, A.3
Hoffmann, J.A.4
Imler, J.L.5
-
68
-
-
33751120715
-
The RNA silencing endonuclease argonaute 2 mediates specific antiviral immunity in drosophila melanogaster
-
van Rij, R.P.; Saleh, M.C.; Berry, B.; Foo, C.; Houk, A.; Antoniewski, C.; Andino, R. The RNA silencing endonuclease argonaute 2 mediates specific antiviral immunity in drosophila melanogaster. Genes Dev. 2006, 20, 2985-2995.
-
(2006)
Genes Dev
, vol.20
, pp. 2985-2995
-
-
van Rij, R.P.1
Saleh, M.C.2
Berry, B.3
Foo, C.4
Houk, A.5
Antoniewski, C.6
Andino, R.7
-
69
-
-
33645979325
-
RNA interference directs innate immunity against viruses in adult drosophila
-
Wang, X.H.; Aliyari, R.; Li, W.X.; Li, H.W.; Kim, K.; Carthew, R.; Atkinson, P.; Ding, S.W. RNA interference directs innate immunity against viruses in adult drosophila. Science 2006, 312, 452-454.
-
(2006)
Science
, vol.312
, pp. 452-454
-
-
Wang, X.H.1
Aliyari, R.2
Li, W.X.3
Li, H.W.4
Kim, K.5
Carthew, R.6
Atkinson, P.7
Ding, S.W.8
-
70
-
-
67650638926
-
Ars2 regulates both miRNA- and siRNA- dependent silencing and suppresses RNA virus infection in drosophila
-
Sabin, L.R.; Zhou, R.; Gruber, J.J.; Lukinova, N.; Bambina, S.; Berman, A.; Lau, C.K.; Thompson, C.B.; Cherry, S. Ars2 regulates both miRNA- and siRNA- dependent silencing and suppresses RNA virus infection in drosophila. Cell 2009, 138, 340-351.
-
(2009)
Cell
, vol.138
, pp. 340-351
-
-
Sabin, L.R.1
Zhou, R.2
Gruber, J.J.3
Lukinova, N.4
Bambina, S.5
Berman, A.6
Lau, C.K.7
Thompson, C.B.8
Cherry, S.9
-
71
-
-
44949256129
-
West nile virus infection of drosophila melanogaster induces a protective rnai response
-
Chotkowski, H.L.; Ciota, A.T.; Jia, Y.; Puig-Basagoiti, F.; Kramer, L.D.; Shi, P.Y.; Glaser, R.L. West nile virus infection of drosophila melanogaster induces a protective rnai response. Virology 2008, 377, 197-206.
-
(2008)
Virology
, vol.377
, pp. 197-206
-
-
Chotkowski, H.L.1
Ciota, A.T.2
Jia, Y.3
Puig-Basagoiti, F.4
Kramer, L.D.5
Shi, P.Y.6
Glaser, R.L.7
-
72
-
-
79952697621
-
Citrus tristeza virus infection induces the accumulation of viral small RNAs (21-24-nt) mapping preferentially at the 3'-terminal region of the genomic RNA and affects the host small RNA profile
-
Ruiz-Ruiz, S.; Navarro, B.; Gisel, A.; Pena, L.; Navarro, L.; Moreno, P.; Di Serio, F.; Flores, R. Citrus tristeza virus infection induces the accumulation of viral small RNAs (21-24-nt) mapping preferentially at the 3'-terminal region of the genomic RNA and affects the host small RNA profile. Plant Mol. Biol. 2011, 75, 607-619.
-
(2011)
Plant Mol. Biol
, vol.75
, pp. 607-619
-
-
Ruiz-Ruiz, S.1
Navarro, B.2
Gisel, A.3
Pena, L.4
Navarro, L.5
Moreno, P.6
di Serio, F.7
Flores, R.8
-
73
-
-
4644223259
-
Mechanisms of gene silencing by double-stranded RNA
-
Meister, G.; Tuschl, T. Mechanisms of gene silencing by double-stranded RNA. Nature 2004, 431, 343-349.
-
(2004)
Nature
, vol.431
, pp. 343-349
-
-
Meister, G.1
Tuschl, T.2
-
74
-
-
56249145105
-
Structure of the guide-strand-containing argonaute silencing complex
-
Wang, Y.; Sheng, G.; Juranek, S.; Tuschl, T.; Patel, D.J. Structure of the guide-strand-containing argonaute silencing complex. Nature 2008, 456, 209-213.
-
(2008)
Nature
, vol.456
, pp. 209-213
-
-
Wang, Y.1
Sheng, G.2
Juranek, S.3
Tuschl, T.4
Patel, D.J.5
-
75
-
-
67349170750
-
Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses
-
Kreuze, J.F.; Perez, A.; Untiveros, M.; Quispe, D.; Fuentes, S.; Barker, I.; Simon, R. Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses. Virology 2009, 388, 1-7.
-
(2009)
Virology
, vol.388
, pp. 1-7
-
-
Kreuze, J.F.1
Perez, A.2
Untiveros, M.3
Quispe, D.4
Fuentes, S.5
Barker, I.6
Simon, R.7
-
76
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M.; Egholm, M.; Altman, W.E.; Attiya, S.; Bader, J.S.; Bemben, L.A.; Berka, J.; Braverman, M.S.; Chen, Y.J.; Chen, Z.; et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437, 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
-
77
-
-
0033572258
-
Optimized multiplex pcr: Efficiently closing a whole-genome shotgun sequencing project
-
Tettelin, H.; Radune, D.; Kasif, S.; Khouri, H.; Salzberg, S.L. Optimized multiplex pcr: Efficiently closing a whole-genome shotgun sequencing project. Genomics 1999, 62, 500-507.
-
(1999)
Genomics
, vol.62
, pp. 500-507
-
-
Tettelin, H.1
Radune, D.2
Kasif, S.3
Khouri, H.4
Salzberg, S.L.5
-
78
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de bruijn graphs
-
Zerbino, D.R.; Birney, E. Velvet: Algorithms for de novo short read assembly using de bruijn graphs. Genome Res. 2008, 18, 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
79
-
-
66449136667
-
Abyss: A parallel assembler for short read sequence data
-
Simpson, J.T.; Wong, K.; Jackman, S.D.; Schein, J.E.; Jones, S.J.; Birol, I. Abyss: A parallel assembler for short read sequence data. Genome Res. 2009, 19, 1117-1123.
-
(2009)
Genome Res
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.5
Birol, I.6
-
80
-
-
0036940601
-
Sequence analysis and genomic organization of aphid lethal paralysis virus: A new member of the family dicistroviridae
-
van Munster, M.; Dullemans, A.M.; Verbeek, M.; van den Heuvel, J.; Clerivet, A.; van der Wilk, F. Sequence analysis and genomic organization of aphid lethal paralysis virus: A new member of the family dicistroviridae. J. Gen. Virol. 2002, 83, 3131-3138.
-
(2002)
J. Gen. Virol
, vol.83
, pp. 3131-3138
-
-
van Munster, M.1
Dullemans, A.M.2
Verbeek, M.3
van den Heuvel, J.4
Clerivet, A.5
van der Wilk, F.6
-
81
-
-
0019485986
-
Detection, biological effects and transmission of a virus of the aphid rhopalosiphum padi
-
DArcy, C.J.; Burnett, P.A.; Hewings, A.D. Detection, biological effects and transmission of a virus of the aphid rhopalosiphum padi. Virology 1981, 114, 268-272.
-
(1981)
Virology
, vol.114
, pp. 268-272
-
-
Darcy, C.J.1
Burnett, P.A.2
Hewings, A.D.3
-
82
-
-
0141862001
-
Characterization of a new densovirus infecting the green peach aphid myzus persicae
-
van Munster, M.; Dullemans, A.M.; Verbeek, M.; van den Heuvel, J.F.; Reinbold, C.; Brault, V.; Clerivet, A.; van der Wilk, F. Characterization of a new densovirus infecting the green peach aphid myzus persicae. J. Invertebr. Pathol. 2003, 84, 6-14.
-
(2003)
J. Invertebr. Pathol
, vol.84
, pp. 6-14
-
-
van Munster, M.1
Dullemans, A.M.2
Verbeek, M.3
van den Heuvel, J.F.4
Reinbold, C.5
Brault, V.6
Clerivet, A.7
van der Wilk, F.8
-
83
-
-
0037236395
-
A new virus infecting myzus persicae has a genome organization similar to the species of the genus densovirus
-
van Munster, M.; Dullemans, A.M.; Verbeek, M.; van den Heuvel, J.F.; Reinbold, C.; Brault, V.; Clerivet, A.; van der Wilk, F. A new virus infecting myzus persicae has a genome organization similar to the species of the genus densovirus. J. Gen. Virol. 2003, 84, 165-172.
-
(2003)
J. Gen. Virol
, vol.84
, pp. 165-172
-
-
van Munster, M.1
Dullemans, A.M.2
Verbeek, M.3
van den Heuvel, J.F.4
Reinbold, C.5
Brault, V.6
Clerivet, A.7
van der Wilk, F.8
-
84
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
Rothberg, J.M.; Hinz, W.; Rearick, T.M.; Schultz, J.; Mileski, W.; Davey, M.; Leamon, J.H.; Johnson, K.; Milgrew, M.J.; Edwards, M.; et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature 2011, 475, 348-352.
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
Schultz, J.4
Mileski, W.5
Davey, M.6
Leamon, J.H.7
Johnson, K.8
Milgrew, M.J.9
Edwards, M.10
-
85
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn, T.C. Field guide to next-generation DNA sequencers. Mol. Ecol. Resour. 2011, 11, 759-769.
-
(2011)
Mol. Ecol. Resour
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
87
-
-
67349183255
-
Insect immunity to viruses
-
Beckage, N.E., Ed.; Academic Press: San Diego, CA, USA
-
Sparks, W.O.; Bartholomay, L.; Bonning, B.C. Insect immunity to viruses. In Insect Immunology; Beckage, N.E., Ed.; Academic Press: San Diego, CA, USA, 2008; pp. 209-242.
-
(2008)
In Insect Immunology
, pp. 209-242
-
-
Sparks, W.O.1
Bartholomay, L.2
Bonning, B.C.3
-
88
-
-
35348921703
-
Baculoviruses and apoptosis: A diversity of genes and responses
-
Clem, R.J. Baculoviruses and apoptosis: A diversity of genes and responses. Curr. Drug Targets 2007, 8, 1069-1074.
-
(2007)
Curr. Drug Targets
, vol.8
, pp. 1069-1074
-
-
Clem, R.J.1
-
89
-
-
77951977959
-
Cricket paralysis virus antagonizes argonaute 2 to modulate antiviral defense in drosophila
-
Nayak, A.; Berry, B.; Tassetto, M.; Kunitomi, M.; Acevedo, A.; Deng, C.; Krutchinsky, A.; Gross, J.; Antoniewski, C.; Andino, R. Cricket paralysis virus antagonizes argonaute 2 to modulate antiviral defense in drosophila. Nat. Struct. Mol. Biol. 2010, 17, 547-554.
-
(2010)
Nat. Struct. Mol. Biol
, vol.17
, pp. 547-554
-
-
Nayak, A.1
Berry, B.2
Tassetto, M.3
Kunitomi, M.4
Acevedo, A.5
Deng, C.6
Krutchinsky, A.7
Gross, J.8
Antoniewski, C.9
Andino, R.10
-
90
-
-
67649238715
-
Viral suppressors of RNA silencing hinder exogenous and endogenous small RNA pathways in drosophila
-
Berry, B.; Deddouche, S.; Kirschner, D.; Imler, J.L.; Antoniewski, C. Viral suppressors of RNA silencing hinder exogenous and endogenous small RNA pathways in drosophila. PLoS One 2009, 4, e5866.
-
(2009)
PLoS One
, vol.4
-
-
Berry, B.1
Deddouche, S.2
Kirschner, D.3
Imler, J.L.4
Antoniewski, C.5
-
91
-
-
0141997715
-
Insect defenses against virus infection: The role of apoptosis
-
Clarke, T.E.; Clem, R.J. Insect defenses against virus infection: The role of apoptosis. Int. Rev. Immunol. 2003, 22, 401-424.
-
(2003)
Int. Rev. Immunol
, vol.22
, pp. 401-424
-
-
Clarke, T.E.1
Clem, R.J.2
-
92
-
-
77649313832
-
Immunity and other defenses in pea aphids, acyrthosiphon pisum
-
Gerardo, N.M.; Altincicek, B.; Anselme, C.; Atamian, H.; Barribeau, S.M.; de Vos, M.; Duncan, E.J.; Evans, J.D.; Gabaldon, T.; Ghanim, M.; et al. Immunity and other defenses in pea aphids, acyrthosiphon pisum. Genome Biol. 2010, 11, R21.
-
(2010)
Genome Biol
, vol.11
-
-
Gerardo, N.M.1
Altincicek, B.2
Anselme, C.3
Atamian, H.4
Barribeau, S.M.5
de Vos, M.6
Duncan, E.J.7
Evans, J.D.8
Gabaldon, T.9
Ghanim, M.10
-
93
-
-
35948984506
-
Control of coleopteran insect pests through RNA interference
-
Baum, J.A.; Bogaert, T.; Clinton, W.; Heck, G.R.; Feldmann, P.; Ilagan, O.; Johnson, S.; Plaetinck, G.; Munyikwa, T.; Pleau, M. et al Control of coleopteran insect pests through RNA interference. Nat. Biotechnol. 2007, 25, 1322-1326.
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 1322-1326
-
-
Baum, J.A.1
Bogaert, T.2
Clinton, W.3
Heck, G.R.4
Feldmann, P.5
Ilagan, O.6
Johnson, S.7
Plaetinck, G.8
Munyikwa, T.9
Pleau, M.10
-
94
-
-
78651424115
-
RNA interference in lepidoptera: An overview of successful and unsuccessful studies and implications for experimental design
-
Terenius, O.; Papanicolaou, A.; Garbutt, J.S.; Eleftherianos, I.; Huvenne, H.; Kanginakudru, S.; Albrechtsen, M.; An, C.; Aymeric, J.L.; Barthel, A. et al RNA interference in lepidoptera: An overview of successful and unsuccessful studies and implications for experimental design. J. Insect Physiol. 2011, 57, 231-245.
-
(2011)
J. Insect Physiol
, vol.57
, pp. 231-245
-
-
Terenius, O.1
Papanicolaou, A.2
Garbutt, J.S.3
Eleftherianos, I.4
Huvenne, H.5
Kanginakudru, S.6
Albrechtsen, M.7
An, C.8
Aymeric, J.L.9
Barthel, A.10
|