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Volumn 51, Issue 10, 2011, Pages 2507-2514

Development of a method to consistently quantify the structural distance between scaffolds and to assess scaffold hopping potential

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL ANALYSIS; DIGITAL LIBRARIES; TOPOLOGY;

EID: 80054899347     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci2003945     Document Type: Article
Times cited : (23)

References (23)
  • 1
    • 80052002666 scopus 로고    scopus 로고
    • Lessons Learned from Molecular Scaffold Analysis
    • Hu, Y.; Stumpfe, D.; Bajorath, J. Lessons Learned from Molecular Scaffold Analysis J. Chem. Inf. Model. 2011, 51, 1742-1753
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 1742-1753
    • Hu, Y.1    Stumpfe, D.2    Bajorath, J.3
  • 2
    • 0029894013 scopus 로고    scopus 로고
    • The properties of known drugs. 1. Molecular frameworks
    • DOI 10.1021/jm9602928
    • Bemis, G. W.; Murcko, M. A. The Properties of Known Drugs. 1. Molecular Frameworks J. Med. Chem. 1996, 39, 2887-2893 (Pubitemid 26251026)
    • (1996) Journal of Medicinal Chemistry , vol.39 , Issue.15 , pp. 2887-2893
    • Bemis, G.W.1    Murcko, M.A.2
  • 4
    • 0000106154 scopus 로고    scopus 로고
    • Algorithm for Naming Molecular Equivalence Classes Represented by Labeled Pseudographs
    • DOI 10.1021/ci0003911
    • Xu, Y.-J.; Johnson, M. Algorithm for Naming Molecular Equivalence Classes Represented by Labeled Pseudographs J. Chem. Inf. Comput. Sci. 2001, 41, 181-185 (Pubitemid 33645688)
    • (2001) Journal of Chemical Information and Computer Sciences , vol.41 , Issue.1 , pp. 181-185
    • Xu, Y.-J.1    Johnson, M.2
  • 5
    • 0033523672 scopus 로고    scopus 로고
    • 'Scaffold-Hopping' by topological pharmacophore search: A contribution to virtual screening
    • DOI 10.1002/(SICI)1521-3773(19991004)38:19<2894::AID-ANIE2894>3.0. CO;2-F
    • Schneider, G.; Neidhart, W.; Giller, T.; Schmid, G. Scaffold- Hopping" by Topological Pharmacophore Search: A Contribution to Virtual Screening Angew. Chem., Int. Ed. 1999, 19, 2894-2896 (Pubitemid 29479958)
    • (1999) Angewandte Chemie - International Edition , vol.38 , Issue.19 , pp. 2894-2896
    • Schneider, G.1    Neidhart, W.2    Giller, T.3    Schmid, G.4
  • 6
    • 33750701141 scopus 로고    scopus 로고
    • On scaffolds and hopping in medicinal chemistry
    • DOI 10.2174/138955706778742768
    • Brown, N.; Jacoby, E. On Scaffolds and Hopping in Medicinal Chemistry Mini-Rev. Med. Chem. 2006, 6, 1217-1229 (Pubitemid 44697101)
    • (2006) Mini-Reviews in Medicinal Chemistry , vol.6 , Issue.11 , pp. 1217-1229
    • Brown, N.1    Jacoby, E.2
  • 9
    • 44449118553 scopus 로고    scopus 로고
    • Indirect similarity based methods for effective scaffold-hopping in chemical compounds
    • DOI 10.1021/ci700369e
    • Wale, N.; Watson, I. A.; Karypis., G. Indirect Similarity Based Methods for Effective Scaffold-Hopping in Chemical Compounds J. Chem. Inf. Model. 2008, 48, 730-741 (Pubitemid 351757740)
    • (2008) Journal of Chemical Information and Modeling , vol.48 , Issue.4 , pp. 730-741
    • Wale, N.1    Watson, I.A.2    Karypis, G.3
  • 10
    • 67650178286 scopus 로고    scopus 로고
    • Using Tversky Similarity Searches for Core Hopping: Finding the Needles in the Haystack
    • Senger, S. Using Tversky Similarity Searches for Core Hopping: Finding the Needles in the Haystack J. Chem. Inf. Model. 2009, 49, 1514-1524
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 1514-1524
    • Senger, S.1
  • 11
    • 66249144110 scopus 로고    scopus 로고
    • Better than Random? the Chemotype Enrichment Problem
    • Mackey, M. D.; Melville, J. L. Better than Random? The Chemotype Enrichment Problem J. Chem. Inf. Model. 2009, 49, 1154-1162
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 1154-1162
    • MacKey, M.D.1    Melville, J.L.2
  • 12
    • 79955027927 scopus 로고    scopus 로고
    • Global Assessment of Scaffold Hopping Potential for Current Pharmaceutical Target
    • Hu, Y.; Bajorath, J. Global Assessment of Scaffold Hopping Potential for Current Pharmaceutical Target Med. Chem. Commun. 2010, 1, 339-344
    • (2010) Med. Chem. Commun. , vol.1 , pp. 339-344
    • Hu, Y.1    Bajorath, J.2
  • 13
    • 77649220192 scopus 로고    scopus 로고
    • Current Trends in Ligand-Based Virtual Screening: Molecular Representations, Data Mining Methods, New Application Areas, and Performance Evaluation
    • Geppert, H.; Vogt, M.; Bajorath, J. Current Trends in Ligand-Based Virtual Screening: Molecular Representations, Data Mining Methods, New Application Areas, and Performance Evaluation J. Chem. Inf. Model. 2010, 50, 205-216
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 205-216
    • Geppert, H.1    Vogt, M.2    Bajorath, J.3
  • 16
    • 44449122375 scopus 로고    scopus 로고
    • Impact of benchmark data set topology on the validation of virtual screening methods: Exploration and quantification by spatial statistics
    • DOI 10.1021/ci700099u
    • Rohrer, S. G.; Baumann, K. Impact of Benchmark Data Set Topology on the Validation of Virtual Screening Methods: Exploration and Quantification by Spatial Statistics J. Chem. Inf. Model. 2008, 48, 704-718 (Pubitemid 351757738)
    • (2008) Journal of Chemical Information and Modeling , vol.48 , Issue.4 , pp. 704-718
    • Rohrer, S.G.1    Baumann, K.2
  • 17
    • 77955401026 scopus 로고    scopus 로고
    • Scaffold Hopping Using Two- Dimensional Fingerprints: True Potential, Black Magic, or a Hopeless Endeavor? Guidelines for Virtual Screening
    • Vogt, M.; Stumpfe, D.; Geppert, H.; Bajorath, J. Scaffold Hopping Using Two- Dimensional Fingerprints: True Potential, Black Magic, or a Hopeless Endeavor? Guidelines for Virtual Screening J. Med. Chem. 2010, 53, 5707-5715
    • (2010) J. Med. Chem. , vol.53 , pp. 5707-5715
    • Vogt, M.1    Stumpfe, D.2    Geppert, H.3    Bajorath, J.4
  • 18
    • 0014757386 scopus 로고
    • A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins
    • Needleman, S. B.; Wunsch, C. D. A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins J. Mol. Biol. 1970, 48, 443-453
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 19
    • 77958525400 scopus 로고    scopus 로고
    • PZIM: A Method for Similarity Searching Using Atom Environments and 2D Alignment
    • Berglund, A. E.; Head, R. D. PZIM: A Method for Similarity Searching Using Atom Environments and 2D Alignment J. Chem. Inf. Model. 2010, 50, 1790-1795
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1790-1795
    • Berglund, A.E.1    Head, R.D.2
  • 20
    • 79955437946 scopus 로고    scopus 로고
    • version 1.7.4.3; OpenEye Scientific Software Inc. Santa Fe, NM.
    • OEChem TK version 1.7.4.3; OpenEye Scientific Software Inc.: Santa Fe, NM, 2010.
    • (2010) OEChem TK
  • 21
    • 0023965741 scopus 로고
    • SMILES, a Chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules
    • Weininger, D. SMILES, a Chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules J. Chem. Inf. Comput. Sci. 1988, 28, 31-36 (Pubitemid 18574254)
    • (1988) Journal of Chemical Information and Computer Sciences , vol.28 , Issue.1 , pp. 31-36
    • Weininger David1
  • 22


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