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Volumn 68, Issue 1, 2011, Pages 23-28

Improved differentiation of Mycobacterium tuberculosis isolates in the north of England using additional variable number tandem repeat loci

Author keywords

Bacterial typing techniques; Mycobacterium tuberculosis; VNTR loci

Indexed keywords

ARTICLE; BACTERIUM ISOLATE; CONTROLLED STUDY; COPY NUMBER VARIATION; DENATURING HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; GEL ELECTROPHORESIS; GENE CLUSTER; GENE LOCUS; GENETIC VARIABILITY; GENOTYPE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STRAIN DIFFERENCE; UNITED KINGDOM; VARIABLE NUMBER OF TANDEM REPEAT;

EID: 80054841387     PISSN: 09674845     EISSN: None     Source Type: Journal    
DOI: 10.1080/09674845.2011.11732837     Document Type: Article
Times cited : (1)

References (33)
  • 1
    • 42549162084 scopus 로고    scopus 로고
    • Eliminating human tuberculosis in the twenty-first century
    • DOI 10.1098/rsif.2007.1138, PII N502JJ12W45R6403
    • Dye C, Williams BG. Eliminating human tuberculosis in the twenty-first century. J R Soc Interface 2008; 5: 653-62. (Pubitemid 351589747)
    • (2008) Journal of the Royal Society Interface , vol.5 , Issue.23 , pp. 653-662
    • Dye, C.1    Williams, B.G.2
  • 2
    • 0037879045 scopus 로고    scopus 로고
    • Molecular methods for Mycobacterium tuberculosis strain typing: A users guide
    • DOI 10.1046/j.1365-2672.2003.01918.x
    • Kanduma E, McHugh TD, Gillespie SH. Molecular methods for Mycobacterium tuberculosis strain typing: a users' guide. J Appl Microbiol 2003; 94: 781-91. (Pubitemid 36555142)
    • (2003) Journal of Applied Microbiology , vol.94 , Issue.5 , pp. 781-791
    • Kanduma, E.1    McHugh, T.D.2    Gillespie, S.H.3
  • 3
    • 0037503639 scopus 로고    scopus 로고
    • Genotyping of the Mycobacterium tuberculosis complex using MIRUs: Association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics
    • DOI 10.1016/S1567-1348(03)00011-X, PII S156713480300011X
    • Sola C, Filliol I, Legrand E et al. Genotyping of the Mycobacterium tuberculosis complex using MIRUs: association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics. Infect Genet Evol 2003; 3: 125-33. (Pubitemid 36686755)
    • (2003) Infection, Genetics and Evolution , vol.3 , Issue.2 , pp. 125-133
    • Sola, C.1    Filliol, I.2    Legrand, E.3    Lesjean, S.4    Locht, C.5    Supply, P.6    Rastogi, N.7
  • 4
    • 0034796701 scopus 로고    scopus 로고
    • Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units
    • DOI 10.1128/JCM.39.10.3563-3571.2001
    • Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, Locht C. Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J Clin Microbiol 2001; 39: 3563-71. (Pubitemid 32954502)
    • (2001) Journal of Clinical Microbiology , vol.39 , Issue.10 , pp. 3563-3571
    • Supply, P.1    Lesjean, S.2    Savine, E.3    Kremer, K.4    Van Soolingen, D.5    Locht, C.6
  • 5
    • 4344697670 scopus 로고    scopus 로고
    • National TB Controllers Association Handbook for TB Controllers, Epidemiologists, Laboratorians, and Other Program Staff (online). Atlanta, GA: US Department of Health and Human Services, CDC, June
    • National TB Controllers Association/CDC Advisory Group on Tuberculosis Genotyping. Guide to the application of genotyping to tuberculosis prevention and control. Handbook for TB Controllers, Epidemiologists, Laboratorians, and Other Program Staff (online). Atlanta, GA: US Department of Health and Human Services, CDC, June 2004 (www.cdc.gov/TB/genotyping/manual.htm).
    • (2004) Guide to the Application of Genotyping to Tuberculosis Prevention and Control
  • 6
    • 13844276550 scopus 로고    scopus 로고
    • Evaluation of a two-step approach for large-scale, prospective genotyping of Mycobacterium tuberculosis isolates in the United States
    • DOI 10.1128/JCM.43.2.688-695.2005
    • Cowan LS, Diem L, Monson T. Evaluation of a two-step approach for large-scale, prospective genotyping of Mycobacterium tuberculosis isolates in the United States. J Clin Microbiol 2005; 43: 688-95. (Pubitemid 40256020)
    • (2005) Journal of Clinical Microbiology , vol.43 , Issue.2 , pp. 688-695
    • Cowan, L.S.1    Diem, L.2    Monson, T.3    Wand, P.4    Temporado, D.5    Oemig, T.V.6    Crawford, J.T.7
  • 8
    • 18744388820 scopus 로고    scopus 로고
    • Stability of variable-number tandem repeats of mycobacterial interspersed repetitive units from 12 loci in serial isolates of Mycobacterium tuberculosis
    • DOI 10.1128/JCM.40.12.4561-4566.2002
    • Savine E, Warren RM, van der Spuy GD et al. Stability of variable-number tandem repeats of mycobacterial interspersed repetitive units from 12 loci in serial isolates of Mycobacterium tuberculosis. J Clin Microbiol 2002; 40: 4561-6. (Pubitemid 35434947)
    • (2002) Journal of Clinical Microbiology , vol.40 , Issue.12 , pp. 4561-4566
    • Savine, E.1    Warren, R.M.2    Van Der, S.G.D.3    Beyers, N.4    Van Helden, P.D.5    Locht, C.6    Supply, P.7
  • 9
    • 8644226069 scopus 로고    scopus 로고
    • Application of mycobacterial interspersed repetitive unit typing to Manitoba tuberculosis cases: Can restriction fragment length polymorphism be forgotten?
    • DOI 10.1128/JCM.42.11.5001-5006.2004
    • Blackwood KS, Wolfe JN, Kabani AM. Application of mycobacterial interspersed repetitive unit typing to Manitoba tuberculosis cases: can restriction fragment length polymorphism be forgotten? J Clin Microbiol 2004; 42: 5001-6. (Pubitemid 39506202)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.11 , pp. 5001-5006
    • Blackwood, K.S.1    Wolfe, J.N.2    Kabani, A.M.3
  • 10
    • 0042023556 scopus 로고    scopus 로고
    • Mycobacterial interspersed repetitive unit typing of Mycobacterium tuberculosis compared to IS6110-based restriction fragment length polymorphism analysis for investigation of apparently clustered cases of tuberculosis
    • DOI 10.1128/JCM.41.8.3514-3520.2003
    • Hawkey PM, Smith EG, Evans JT et al. Mycobacterial interspersed repetitive unit typing of Mycobacterium tuberculosis compared to IS6110-based restriction fragment length polymorphism analysis for investigation of apparently clustered cases of tuberculosis. J Clin Microbiol 2003; 41: 3514-20. (Pubitemid 36994676)
    • (2003) Journal of Clinical Microbiology , vol.41 , Issue.8 , pp. 3514-3520
    • Hawkey, P.M.1    Smith, E.G.2    Evans, J.T.3    Monk, P.4    Bryan, G.5    Mohamed, H.H.6    Bardhan, M.7    Pugh, R.N.8
  • 11
    • 29144467079 scopus 로고    scopus 로고
    • Can 15-locus mycobacterial interspersed repetitive unit-variable-number tandem repeat analysis provide insight into the evolution of Mycobacterium tuberculosis?
    • DOI 10.1128/AEM.71.12.8207-8213.2005
    • Gibson A, Brown T, Baker L, Drobniewski F. Can 15-locus mycobacterial interspersed repetitive unit-variable-number tandem repeat analysis provide insight into the evolution of Mycobacterium tuberculosis? Appl Environ Microbiol 2005; 71 (12): 8207-13. (Pubitemid 41803946)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.12 , pp. 8207-8213
    • Gibson, A.1    Brown, T.2    Baker, L.3    Drobniewski, F.4
  • 12
    • 33746211165 scopus 로고    scopus 로고
    • Progression toward an improved DNA amplification-based typing technique in the study of Mycobacterium tuberculosis epidemiology
    • DOI 10.1128/JCM.01428-05
    • Gopaul KK, Brown TJ, Gibson AL, Yates MD, Drobniewski FA. Progression toward an improved DNA amplification-based typing technique in the study of Mycobacterium tuberculosis epidemiology. J Clin Microbiol 2006; 44: 2492-8. (Pubitemid 44092417)
    • (2006) Journal of Clinical Microbiology , vol.44 , Issue.7 , pp. 2492-2498
    • Gopaul, K.K.1    Brown, T.J.2    Gibson, A.L.3    Yates, M.D.4    Drobniewski, F.A.5
  • 14
    • 85038527082 scopus 로고    scopus 로고
    • www.ncbi.nlm.nih.gov/Genbank/index.html
  • 15
    • 85038497390 scopus 로고    scopus 로고
    • Microsoft Windows version 7
    • Lasergene (Microsoft Windows version 7).
    • Lasergene
  • 16
    • 24744462084 scopus 로고    scopus 로고
    • Molecular typing of Mycobacterium tuberculosis by mycobacterial interspersed repetitive unit-variable-number tandem repeat analysis, a more accurate method for identifying epidemiological links between patients with tuberculosis
    • DOI 10.1128/JCM.43.9.4473-4479.2005
    • van Deutekom H, Supply P, de Haas PE et al. Molecular typing of Mycobacterium tuberculosis by mycobacterial interspersed repetitive unit-variable number tandem repeat analysis, a more accurate method for identifying epidemiological links between patients with tuberculosis. J Clin Microbiol 2005; 43: 4473-9. (Pubitemid 41298230)
    • (2005) Journal of Clinical Microbiology , vol.43 , Issue.9 , pp. 4473-4479
    • Van Deutekom, H.1    Supply, P.2    De Haas, P.E.W.3    Willery, E.4    Hoijng, S.P.5    Locht, C.6    Coutinho, R.A.7    Van Soolingen, D.8
  • 17
    • 85038515173 scopus 로고    scopus 로고
    • www.ncbi.nlm.nih.gov/blast/Blast.cgi.html
  • 18
    • 4644263023 scopus 로고    scopus 로고
    • Automated high-throughput mycobacterial interspersed repetitive unit typing of Mycobacterium tuberculosis strains by a combination of PCR and nondenaturing high-performance liquid chromatography
    • DOI 10.1128/JCM.42.9.4175-4180.2004
    • Evans JT, Hawkey PM, Smith EG, Boese KA, Warren RE, Hong G. Automated high-throughput mycobacterial interspersed repetitive unit typing of Mycobacterium tuberculosis strains by a combination of PCR and nondenaturing high-performance liquid chromatography. J Clin Microbiol 2004; 42: 4175-80. (Pubitemid 39296142)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.9 , pp. 4175-4180
    • Evans, J.T.1    Hawkey, P.M.2    Smith, E.G.3    Boese, K.A.4    Warren, R.E.5    Hong, G.6
  • 20
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: An application of Simpson's Index of Diversity
    • Hunter PR, Gaston MA. Numerical index of the discriminatory ability of typing systems: an application of Simpson's Index of Diversity. J Clin Microbiol 1988; 26: 2465-6.
    • (1988) J Clin Microbiol , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 23
    • 8644235014 scopus 로고    scopus 로고
    • Molecular epidemiology of tuberculosis
    • Narayanan S. Molecular epidemiology of tuberculosis. Indian J Med Res 2004; 120: 233-47. (Pubitemid 39504466)
    • (2004) Indian Journal of Medical Research , vol.120 , Issue.4 , pp. 233-247
    • Narayanan, S.1
  • 25
    • 0028287309 scopus 로고
    • Transmission of tuberculosis in New York City. An analysis by DNA fingerprinting and conventional epidemiologic methods
    • Alland D, Kalkut GE, Moss AR et al. Transmission of tuberculosis in New York City. An analysis by DNA fingerprinting and conventional epidemiologic methods. N Engl J Med 1994; 330: 1710-6.
    • (1994) N Engl J Med , vol.330 , pp. 1710-1716
    • Alland, D.1    Kalkut, G.E.2    Moss, A.R.3
  • 26
    • 85038522425 scopus 로고    scopus 로고
    • www.hpa-bionum.org.uk/TBtyping
  • 29
    • 34249700248 scopus 로고    scopus 로고
    • Improved differentiation of Mycobacterium tuberculosis strains, including many Beijing genotype strains, using a new combination of variable number of tandem repeats loci
    • DOI 10.1016/j.meegid.2007.02.006, PII S1567134807000366
    • Yokoyama E, Kishida K, Uchimura M, Ichinohe S. Improved differentiation of Mycobacterium tuberculosis strains, including many Beijing genotype strains, using a new combination of variable number of tandem repeats loci. Infect Genet Evol 2007; 7: 499-508. (Pubitemid 46825535)
    • (2007) Infection, Genetics and Evolution , vol.7 , Issue.4 , pp. 499-508
    • Yokoyama, E.1    Kishida, K.2    Uchimura, M.3    Ichinohe, S.4
  • 31
    • 42049114016 scopus 로고    scopus 로고
    • Evaluation of the new advanced 15-loci MIRU-VNTR genotyping tool in Mycobacterium tuberculosis molecular epidemiology studies
    • Alonso-Rodríguez N, Martínez-Lirola M, Herránz M et al. Evaluation of the new advanced 15-loci MIRU-VNTR genotyping tool in Mycobacterium tuberculosis molecular epidemiology studies. BMC Microbiol 2008; 8: 34-42.
    • (2008) BMC Microbiol , vol.8 , pp. 34-42
    • Alonso-Rodríguez, N.1    Martínez-Lirola, M.2    Herránz, M.3
  • 33
    • 33947231744 scopus 로고    scopus 로고
    • Assessment of an optimized mycobacterial interspersed repetitive-unit- variable-number tandem-repeat typing system combined with spoligotyping for population-based molecular epidemiology studies of tuberculosis
    • DOI 10.1128/JCM.01393-06
    • Oelemann MC, Diel R, Vatin V et al. Assessment of an optimized mycobacterial interspersed repetitive unit-variable-number tandem-repeat typing system combined with spoligotyping for population-based molecular epidemiology studies of tuberculosis. J Clin Microbiol 2007; 45: 691-7. (Pubitemid 46427679)
    • (2007) Journal of Clinical Microbiology , vol.45 , Issue.3 , pp. 691-697
    • Oelemann, M.C.1    Diel, R.2    Vatin, V.3    Haas, W.4    Rusch-Gerdes, S.5    Locht, C.6    Niemann, S.7    Supply, P.8


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