Andean uplift promotes lowland speciation through vicariance and dispersal in Dendrocincla woodcreepers

Molecular Ecology

Volumn 20, Issue 21, 2011, Pages 4550-4563

  Weir, Jason T ^a   Price, Momoko ^a,b  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

Andes; Atlantic Forest; Dendrocincla; dispersal; Eastern Cordillera; speciation; vicariance

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BIODIVERSITY; CLASSIFICATION; COLOMBIA; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; PHYSIOLOGY; SONGBIRD; SPECIES DIFFERENTIATION;

ANIMALS; BIODIVERSITY; COLOMBIA; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENETIC SPECIATION; PASSERIFORMES; PHYLOGENY;

DENDROCINCLA;

EID: 80054820590     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2011.05294.x     Document Type: Article

References (77)

1. Aleixo A, (2002) Molecular systematics and the role of the "varzea"-"Terra-firme" ecotone in the diversification of Xiphorhynchus woodcreepers (Aves: Dendrocolaptidae). The Auk, 119, 621-640.
2. Aleixo A, (2004) Historical diversification of a terra-firme forest bird superspecies: a phylogeographic perspective on the role of different hypotheses of Amazonian diversification. Evolution, 58, 1303-1317. (Pubitemid 38826282)
3. Brumfield RT, Capparella AP, (1996) Historical diversification of birds in northwestern South America: a molecular perspective on the role of vicariant events. Evolution, 50, 1607-1624.
4. Brumfield RT, Tello JG, Cheviron ZA, Carling MD, Crochet N, Rosenberg KV, (2007) Phylogenetic conservatism and antiquity of a tropical specialization: army-ant-following in the typical antbirds (Thamnophilidae). Molecular Phylogenetics and Evolution, 45, 1-13. (Pubitemid 47380428)
5. Burney CW, Brumfield RT, (2009) Ecology predicts levels of genetic differentiation in Neotropical birds. The American Naturalist, 174, 358-368.
6. Burns KJ, Naoki K, (2004) Molecular phylogenetics and biogeography of Neotropical tanagers in the genus Tangara. Molecular Phylogenetics and Evolution, 32, 838-854. (Pubitemid 39033540)
7. Cabanne GS, d'Horta FM, Sari HER, Santos FR, Miyaki CY, (2008) Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): biogeography and systematics implications. Molecular Phylogenetics and Evolution, 49, 760-773.
8. Carnaval AC, Hickerson MJ, Haddad CFB, Rodrigues MT, Moritz C, (2009) Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science, 323, 785-789.
9. Chapman FM, (1917) The distribution of bird-life in Colombia. Bulletin of the American Museum of Natural History, 36, 347-355.
10. Chapman FM, (1926) The distribution of bird-life in Ecuador. Bulletin of the American Museum of Natural History, 55, 1-784.
11. Costa LP, (2003) The historical bridge between the Amazon and the Atlantic Forest of Brazil: a study of molecular phylogeography with small mammals. Journal of Biogeography, 30, 71-86. (Pubitemid 36154321)
12. Cracraft J, (1985) Historical biogeography and patterns of differentiation within the South American avifauna: areas of endemism. Ornithological Monographs, 36, 49-84.
13. DaCosta JM, Klicka J, (2008) The great American interchange in birds: a phylogenetic perspective with the genus Trogon. Molecular Ecology, 17, 1328-1343. (Pubitemid 351294601)
14. Derryberry E, Claramunt S, Chesser RT, et al. (2010) Certhiasomus, a new genus of woodcreeper (Aves: Passeriformes: Dendrocolatidae). Zootaxa, 2416, 44-50.
15. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
16. Edwards SV, Lui L, Pearl DK, (2007) High resolution species trees without concatenation. Proceedings of the National Academy of Sciences of the United States of America, 104, 5936-5941. (Pubitemid 47175637)
17. Ericson PGP, Johansson US, Parsons TJ, (2000) Major divisions in the oscines revealed by insertions in the nuclear gene c-myc: a novel gene in avian phylogenetics. The Auk, 117, 1069-1078.
18. Figueiredo J, Hoorn C, van der Ven P, Soares E, (2009) Late Miocene onset of the Amazon River and the Amazon deep-sea fan: evidence from the Foz do Amazonas Basin. Geology, 37, 619-622.
19. Garzione CN, Hoke GD, Libarkin JC, et al. (2008) Rise of the Andes. Science, 320, 1304-1307. (Pubitemid 351929459)
20. Gregory-Wodzicki KM, (2000) Uplift history of the central and northern Andes: a review. Geological Society of America Bulletin, 112, 1091-1105. (Pubitemid 32832321)
21. Groth JC, Barrowclough GF, (1999) Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Molecular Phylogenetics and Evolution, 12, 115-123. (Pubitemid 129499294)
22. Hackett S, (1996) Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Molecular Phylogenetics and Evolution, 5, 368-382. (Pubitemid 126321177)
23. Haffer J, (1967) Speciation in Colombian forest birds west of the Andes. American Museum Novitates, 294, 1-57.
24. Haffer J, (1969) Speciation in Amazonian forest birds. Science, 165, 131-137.
25. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
26. Harrison S, Cornell H, (2008) Towards a better understanding of the regional causes of local community richness. Ecological Letters, 11, 969-979.
27. Hartley A, (2003) Andean uplift and climate change. Journal of the Geological Society, 160, 7-10. (Pubitemid 36141578)
28. Hilty SL, (1972) Notes on birds at swarms of army ants in the highlands of Colombia. Wilson Bulletin., 86, 479-481.
29. Hilty SL, (2003) Birds of Venezuela. Princeton University Press, Princeton, New Jersey.
30. Hilty SL, Brown WL, (1986) Birds of Colombia. Princeton University Press, Princeton, New Jersey.
31. Hooghiemstra H, van der Hammen T, (1998) Neogene and quaternary development of the neotropical rain forest: the forest refugia hypothesis, and a literature overview. Earth-Science Reviews, 44, 147-183. (Pubitemid 29097041)
32. Hoorn C, Guerrero J, Sarmiento GA, Lorente MA, (1995) Andean tectonics as a cause for changing drainage patterns in Miocene northern South America. Geology, 23, 237-240.
33. Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755. (Pubitemid 32851390)
34. Hughes C, Eastwood R, (2006) Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes. Proceedings of the National Academy of Sciences of the United States of America, 103, 10334-10339. (Pubitemid 44051167)
35. Irestedt M, Johansson US, Parsons TJ, Ericson PGP, (2001) Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data. Journal of Avian Biology, 32, 15-25. (Pubitemid 32265338)
36. Irestedt M, Fjeldsà J, Johansson US, Ericson PGP, (2002) Systematic relationships and biogeography of the tracheophone suboscines (Aves: Passeriformes). Molecular Phylogenetics and Evolution, 23, 499-512. (Pubitemid 34749763)
37. Irestedt M, Fjeldsà J, Ericson PGP, (2004) Phylogenetic relationships of woodcreepers (Aves: Dendrocolaptinae)-incongruence between molecular and morphological data. Journal of Avian Biology, 35, 280-288. (Pubitemid 38722304)
38. Irestedt M, Fjeldsà J, Dalén L, Ericson PGP, (2009) Convergent evolution, habitat shifts and variable diversification rates in the ovenbird-woodcreeper family (Furnariidae). BMC Evolutionary Biology, 9, 268.
39. Johnson KJ, Sorenson MD, (1998) Comparing molecular evolution in two mitochondrial protein coding genes (Cytochrome b and ND2) in the dabbling ducks (Tribe: Anatini). Molecular Phylogenetics and Evolution, 10, 82-94. (Pubitemid 128350708)
40. Kreft H, Jetz W, (2007) Global patterns and determinants of vascular plant diversity. Proceedings of the National Academy of Sciences of the United States of America, 104, 5925-5930. (Pubitemid 47175635)
41. Liu L, (2008) BEST: Bayesian estimation of species trees under the coalescent model. Bioinformatics, 24, 2542-2543.
42. MacArthur RH, Wilson EO, (1967) The Theory of Island Biogeography. Princeton University Press, Princeton, New Jersey.
43. Marantz CA, Aleixo A, Brevier LR, Patten MA, (2003) Family Dendrocolaptidae (Woodcreepers). In: Handbook of the Birds of the World Vol. 8. Broadbills to Tapaculos (eds, del Hoyo J, Elliott A, Christie DA,), pp. 358-447. Lynx Edicions, Barcelona.
44. Marks BD, Hackett SJ, Capparella AP, (2002) Historical relationships among Neotropical lowland forest areas of endemism as determined by mitochondrial DNA sequence variation within the wedge-billed woodcreeper (Aves: Dendrocolaptidae: Glyphorynchus spirurus). Molecular Phylogenetics and Evolution, 24, 153-167.
45. Miller MJ, Bermingham E, Klicka J, et al. (2008) Out of Amazonia again and again: episodic crossing of the Andes promotes diversification in a lowland forest flycatcher. Proceedings of the Royal Society B: Biological Sciences, 275, 1133-1142. (Pubitemid 351481547)
46. Mora A, Parra M, Strecker MR, et al. (2008) Climatic forcing of asymmetric orogenic evolution in the Eastern Cordillera of Colombia. Bulletin of the Geological Society of America, 120, 930-949.
47. Mora A, Baby P, Roddaz M, et al. (2010) Tectonic history of the Andes and sub-Andean zones: implications for the development of the Amazon drainage basin. In: Amazonia, Landscape and Species Evolution (eds, Hoorn C, Wesselingh FP,), pp. 38-60. Wiley, Oxford.
48. Newton I, (2003) The Speciation and Biogeography of Birds. Academic Press, Amsterdam.
49. Nyári AS, (2007) Phylogeographic patterns, molecular and vocal differentiation, and species limits in Schiffornis turdina (Aves). Molecular Phylogenetics and Evolution, 44, 154-164. (Pubitemid 46829923)
50. Nylander JAA, (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
51. Nylander JAA, Olsson U, Alström P, Sanmartín I, (2008a) Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus). Systematic Biology, 57, 257-268.
52. Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL, (2008b) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics, 24, 581-583. (Pubitemid 351256305)
53. Palumbi SR, (1996) Nucleic acids II: the polymerase chain reaction. In: Molecular Systematics, 2nd edn (eds, Hillis DM, Moritz C, Mable BK,), pp. 205-247. Sinauer Associates, Sunderland, Massachusetts.
54. Patane JSL, Weckstein JD, Aleixo A, Bates JM, (2009) Evolutionary history of Ramphastos toucans: molecular phylogenetics, temporal diversification, and biogeography. Molecular Phylogenetics and Evolution, 53, 923-934.
55. Pellegrino KCM, Rodrigues MT, Waite AN, Morando M, Yassuda YY, Sites JW Jr, (2005) Phylogeography and species limits in the Gymnodactylus darwinii complex (Gekkonidae, Squamata): genetic structure coincides with river systems in the Brazilian Atlantic forest. Biological Journal of the Linnean Society, 85, 13-26. (Pubitemid 40660454)
56. Raikow RJ, (1994) A phylogeny of the woodcreepers (Dendrocolaptidae). The Auk, 111, 104-114.
57. Rambaut A, Drummond AJ, (2009) TRACER: MCMC trace analysis tool v1.5.0. Available at:.
58. Ribas CC, Moyle RG, Miyaki CY, Cracraft J, (2007) The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots. Proceedings of the Royal Society B: Biological Sciences, 274, 2399-2408. (Pubitemid 47436600)
59. Ricklefs RE, (1987) Community diversity: the relative roles of regional and local processes. Science, 235, 167-171.
60. Ridgely RS, Tudor G, (1994) The Birds of South America (Volume 2: The Suboscine Passerines), University of Texas Press, Austin.
61. Rosenzweig ML, (1995) Species Diversity in Space and Time. Cambridge University Press, Cambridge, UK.
62. Sedano RE, Burns KJ, (2009) Are the Northern Andes a species pump for Neotropical birds? Phylogenetics and biogeography of a clade of Neotropical tanagers (Aves: Thraupini). Journal of Biogeography, 37, 325-343.
63. Shimodaira H, Hasegawa M, (1999) Multiple comparisons of loglikelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114-1116. (Pubitemid 29368141)
64. Sick H, (1967) Rios e enchentes na Amazonia como obstaculo para a avifauna. In: Atlas do simposio sobre a biota Amazonica. vol. 5 (Zoologia) (ed., Lent H,), pp. 495-520. Conselho Nacional de Pesquisas, Rio de Janeiro.
65. Stephens M, Donnelly P, (2003) A comparison of bayesian methods for haplotype reconstruction. American Society of Human Genetics, 73, 1162-1169. (Pubitemid 37414228)
66. Stephens M, Smith NJ, Donnelly P, (2001) A new statistical method for haplotype reconstruction from population data. American Society of Human Genetics, 68, 978-989. (Pubitemid 32289743)
67. Swofford DL, (2002) PAUP* 4.0b10: Phylogenetic Analysis Using Parsimony (And Other Methods). Sinauer Associates, Sunderland, Massachusetts.
68. Weir JT, (2006) Divergent timing and patterns of species accumulation in lowland and highland Neotropical birds. Evolution, 60, 842-855. (Pubitemid 44804526)
69. Weir JT, (2009) Implications of genetic differentiation in Neotropical montane forest birds. Annals of the Missouri Botanical Garden, 96, 410-433.
70. Weir JT, Schluter D, (2007) The latitudinal gradient in recent speciation and extinction rates. Science, 315, 1574-1576. (Pubitemid 46449473)
71. Weir JT, Schluter D, (2008) Calibrating the avian molecular clock. Molecular Ecology, 17, 2321-2328. (Pubitemid 351623774)
72. Weir JT, Bermingham E, Miller MJ, Klicka J, González MA, (2008) Phylogeography of a morphologically diverse Neotropical montane species, the Common Bush-Tanager (Chlorospingus ophthalmicus). Molecular Phylogenetics and Evolution, 47, 650-664.
73. Weir JT, Bermingham E, Schluter D, (2009) The Great American biotic interchange in birds. Proceedings of the National Academy of Sciences of the United States of America, 106, 21737-21742.
74. Willis EO, (1972) The behaviour of plain-brown woodcreepers, Dendrocincla fuliginosa. Wilson Bulletin, 84, 377-420.
75. Willis EO, (1992) Zoogeographical origins of eastern Brazilian birds. Ornitologia Neotropical, 3, 1-15.
76. Yu Y, Harris AJ, He X, (2010) S-DIVA (Statistical Dispersal-Vicariance Analysis): a tool for inferring biogeographic histories. Molecular Phylogenetics and Evolution, 56, 848-850.
77. Zimmer JT, Mayr E, (1943) New species of birds described from 1983 to 1941. The Auk, 60, 249-262.