메뉴 건너뛰기




Volumn 6, Issue 10, 2011, Pages

Time-course analysis of cyanobacterium transcriptome: Detecting oscillatory genes

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

EID: 80054734901     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0026291     Document Type: Article
Times cited : (4)

References (31)
  • 2
    • 1442285084 scopus 로고    scopus 로고
    • Circadian transcriptional output in the SCN and liver of the mouse
    • Hogenesch JB, Panda S, Kay S, Takahashi JS, (2003) Circadian transcriptional output in the SCN and liver of the mouse. Novartis Found Symp 253: 171-180.
    • (2003) Novartis Found Symp , vol.253 , pp. 171-180
    • Hogenesch, J.B.1    Panda, S.2    Kay, S.3    Takahashi, J.S.4
  • 4
    • 18444414586 scopus 로고    scopus 로고
    • Coordinated transcription of key pathways in the mouse by the circadian clock
    • Panda S, Antoch MP, Miller BH, Su AI, Schook AB, et al. (2002) Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 109: 307-320.
    • (2002) Cell , vol.109 , pp. 307-320
    • Panda, S.1    Antoch, M.P.2    Miller, B.H.3    Su, A.I.4    Schook, A.B.5
  • 5
    • 0037007625 scopus 로고    scopus 로고
    • Extensive and divergent circadian gene expression in liver and heart
    • Storch KF, Lipan O, Leykin I, Viswanathan N, Davis FC, et al. (2002) Extensive and divergent circadian gene expression in liver and heart. Nature 417: 78-83.
    • (2002) Nature , vol.417 , pp. 78-83
    • Storch, K.F.1    Lipan, O.2    Leykin, I.3    Viswanathan, N.4    Davis, F.C.5
  • 6
    • 0036682099 scopus 로고    scopus 로고
    • A transcription factor response element for gene expression during circadian night
    • Ueda HR, Chen W, Adachi A, Wakamatsu H, Hayashi S, et al. (2002) A transcription factor response element for gene expression during circadian night. Nature 418: 534-539.
    • (2002) Nature , vol.418 , pp. 534-539
    • Ueda, H.R.1    Chen, W.2    Adachi, A.3    Wakamatsu, H.4    Hayashi, S.5
  • 9
    • 4444352289 scopus 로고    scopus 로고
    • Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data
    • Schmitt WA, Raab RM, Stephanopoulos G, (2004) Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data. Genome Research 14: 1654-1663.
    • (2004) Genome Research , vol.14 , pp. 1654-1663
    • Schmitt, W.A.1    Raab, R.M.2    Stephanopoulos, G.3
  • 10
    • 0347762732 scopus 로고    scopus 로고
    • Prediction of transcriptional profiles of Synechocystis PCC6803 by dynamic autoregressive modeling of DNA microarray data
    • Schmitt WA, Stephanopoulos G, (2003) Prediction of transcriptional profiles of Synechocystis PCC6803 by dynamic autoregressive modeling of DNA microarray data. Biotechnology and Bioengineering 84: 855-863.
    • (2003) Biotechnology and Bioengineering , vol.84 , pp. 855-863
    • Schmitt, W.A.1    Stephanopoulos, G.2
  • 11
    • 0036855903 scopus 로고    scopus 로고
    • Statistical analysis of a small set of time-ordered gene expression data using linear splines
    • de Hoon MJL, Imoto S, Miyano S, (2002) Statistical analysis of a small set of time-ordered gene expression data using linear splines. Bioinformatics 18: 1477-1485.
    • (2002) Bioinformatics , vol.18 , pp. 1477-1485
    • de Hoon, M.J.L.1    Imoto, S.2    Miyano, S.3
  • 12
    • 14644422162 scopus 로고    scopus 로고
    • Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803
    • Kucho K, Okamoto K, Tsuchiya Y, Nomura S, Nango M, et al. (2005) Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 187: 2190-2199.
    • (2005) J Bacteriol , vol.187 , pp. 2190-2199
    • Kucho, K.1    Okamoto, K.2    Tsuchiya, Y.3    Nomura, S.4    Nango, M.5
  • 13
    • 0347093600 scopus 로고    scopus 로고
    • Identifying periodically expressed transcripts in microarray time series data
    • Wichert S, Fokianos K, Strimmer K, (2004) Identifying periodically expressed transcripts in microarray time series data. Bioinformatics 20: 5-20.
    • (2004) Bioinformatics , vol.20 , pp. 5-20
    • Wichert, S.1    Fokianos, K.2    Strimmer, K.3
  • 15
    • 1342288029 scopus 로고    scopus 로고
    • Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data
    • Luan Y, Li H, (2004) Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data. Bioinformatics 20: 332-339.
    • (2004) Bioinformatics , vol.20 , pp. 332-339
    • Luan, Y.1    Li, H.2
  • 16
    • 1342328547 scopus 로고    scopus 로고
    • Statistical resynchronization and Bayesian detection of periodically expressed genes
    • Lu X, Zhang W, Qin ZS, Kwast KE, Liu JS, (2004) Statistical resynchronization and Bayesian detection of periodically expressed genes. Nucleic Acids Res 32: 447-455.
    • (2004) Nucleic Acids Res , vol.32 , pp. 447-455
    • Lu, X.1    Zhang, W.2    Qin, Z.S.3    Kwast, K.E.4    Liu, J.S.5
  • 17
    • 14844285655 scopus 로고    scopus 로고
    • Comparison of computational methods for the identification of cell cycle-regulated genes
    • de Lichtenberg U, Jensen LJ, Fausboll A, Jensen TS, Bork P, et al. (2005) Comparison of computational methods for the identification of cell cycle-regulated genes. Bioinformatics 21: 1164-1171.
    • (2005) Bioinformatics , vol.21 , pp. 1164-1171
    • de Lichtenberg, U.1    Jensen, L.J.2    Fausboll, A.3    Jensen, T.S.4    Bork, P.5
  • 18
    • 77957266573 scopus 로고    scopus 로고
    • JTK_CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets
    • Hughes ME, Hogenesch JB, Kornacker K, (2010) JTK_CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. J Biol Rhythms 25: 372-380.
    • (2010) J Biol Rhythms , vol.25 , pp. 372-380
    • Hughes, M.E.1    Hogenesch, J.B.2    Kornacker, K.3
  • 19
    • 0035977158 scopus 로고    scopus 로고
    • Microarray analysis and organization of circadian gene expression un Drosphila
    • McDonald MJ, Rosbash M, (2001) Microarray analysis and organization of circadian gene expression un Drosphila. Cell 107: 567-578.
    • (2001) Cell , vol.107 , pp. 567-578
    • McDonald, M.J.1    Rosbash, M.2
  • 21
    • 11944275853 scopus 로고
    • Information theory and statistical mechanics
    • Jaynes ET, (1957) Information theory and statistical mechanics. Phys Rev 108: 171-190.
    • (1957) Phys Rev , vol.108 , pp. 171-190
    • Jaynes, E.T.1
  • 22
    • 38349050021 scopus 로고    scopus 로고
    • Clustering gene expression by dynamics: A maximum entropy approach
    • Diambra L, (2008) Clustering gene expression by dynamics: A maximum entropy approach. Physica A 387: 2187-2196.
    • (2008) Physica A , vol.387 , pp. 2187-2196
    • Diambra, L.1
  • 24
    • 0000868646 scopus 로고    scopus 로고
    • Modelling time series using information theory
    • Diambra L, Plastino A, (1996) Modelling time series using information theory. Physics Letters 216: 278-282.
    • (1996) Physics Letters , vol.216 , pp. 278-282
    • Diambra, L.1    Plastino, A.2
  • 26
    • 84861094851 scopus 로고    scopus 로고
    • KEGG categories: Available
    • KEGG categories: Available:http://genome.kazusa.or.jp/cyanobase/Synechocystis/genes/category.txt.
  • 27
    • 77957266573 scopus 로고    scopus 로고
    • JTK_CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets
    • Hughes ME, Hogenesch JB, Kornacker K, (2010) JTK_CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. J Biol Rhythms 25: 372-380.
    • (2010) J Biol Rhythms , vol.25 , pp. 372-380
    • Hughes, M.E.1    Hogenesch, J.B.2    Kornacker, K.3
  • 28
    • 0032483510 scopus 로고    scopus 로고
    • Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria
    • Ishiura M, Kutsuna S, Aoki S, Iwasaki H, Andersson CR, et al. (1998) Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281: 1519-1523.
    • (1998) Science , vol.281 , pp. 1519-1523
    • Ishiura, M.1    Kutsuna, S.2    Aoki, S.3    Iwasaki, H.4    Andersson, C.R.5
  • 30
    • 0032698089 scopus 로고    scopus 로고
    • Circadian programs in cyanobacteria: adaptiveness and mechanism
    • Johnson CH, Golden SS, (1999) Circadian programs in cyanobacteria: adaptiveness and mechanism. Annu Rev Microbiol 53: 389-409.
    • (1999) Annu Rev Microbiol , vol.53 , pp. 389-409
    • Johnson, C.H.1    Golden, S.S.2
  • 31
    • 0035157654 scopus 로고    scopus 로고
    • Nitrogen-regulated group 2 sigma factor from Synechocystis sp. strain PCC 6803 involved in survival under nitrogen stress
    • Muro-Pastor AM, Herrero A, Flores E, (2001) Nitrogen-regulated group 2 sigma factor from Synechocystis sp. strain PCC 6803 involved in survival under nitrogen stress. J Bacteriol 183: 1090-1095.
    • (2001) J Bacteriol , vol.183 , pp. 1090-1095
    • Muro-Pastor, A.M.1    Herrero, A.2    Flores, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.