Exploring the function of alcohol dehydrogenases during the endophytic life of Azoarcus sp. strain BH72

Molecular Plant-Microbe Interactions

Volumn 24, Issue 11, 2011, Pages 1325-1332

  Krause, Andrea ^a   Bischoff, Birte ^a   Miché, Lucie ^a,b   Battistoni, Federico ^a,c   Reinhold Hurek, Barbara ^a  

^a UNIVERSITY OF BREMEN   (Germany)

^b AVIGNON UNIVERSITÉ   (France)

^c INSTITUTO DE INVESTIGACIONES BIOLÓGICAS CLEMENTE ESTABLE   (Uruguay)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DEHYDROGENASE;

ARTICLE; ASCOMYCETES; AZOARCUS; ENZYMOLOGY; GENE EXPRESSION PROFILING; GENETICS; METABOLISM; MUTATION; PHYSIOLOGY; PLANT GENE;

ALCOHOL DEHYDROGENASE; ASCOMYCOTA; AZOARCUS; GENE EXPRESSION PROFILING; GENES, PLANT; MUTATION;

AZOARCUS SP.; BACTERIA (MICROORGANISMS);

EID: 80054730092     PISSN: 08940282     EISSN: None     Source Type: Journal    
DOI: 10.1094/MPMI-05-11-0139     Document Type: Article

References (41)

1. Agarwal, S., and Grover, A. 2006. Molecular biology, biotechnology and genomics of flooding-associated low O2 stress response in plants. Crit. Rev. Plant Sci. 25:1-21. (Pubitemid 43068152)
2. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402. (Pubitemid 27359211)
3. Bendtsen, J. D., Nielsen, H., von Heijne, G., and Brunak, S. 2004. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340:783-795. (Pubitemid 38829638)
4. Bertani, A., Brambilla, I., and Menegus, F. 1980. Effect of anaerobiosis on rice seedlings: Growth, metabolic rate, and fate of fermentation products. J. Exp. Bot. 31:325-331.
5. Böhm, M., Hurek, T., and Reinhold-Hurek, B. 2007. Twitching motility is essential for endophytic rice colonization by the N2-fixing endophyte Azoarcus sp. strain BH72. Mol. Plant-Microbe Interact. 20:526-533. (Pubitemid 46641430)
6. Cowie, A., Cheng, J., Sibley, C. D., Fong, Y., Zaheer, R., Patten, C. L., Morton, R. M., Golding, G. B., and Finan, T. M. 2006. An integrated approach to functional genomics: Construction of a novel reporter gene fusion library for Sinorhizobium meliloti. Appl. Environ. Microbiol. 72:7156-7167. (Pubitemid 44748429)
7. Dörr, J., Hurek, T., and Reinhold-Hurek, B. 1998. Type IV pili are involved in plant-microbe and fungus-microbe interactions. Mol. Microbiol. 30:7-17. (Pubitemid 28446616)
8. Egener, T., Hurek, T., and Reinhold-Hurek, B. 1998. Use of green fluorescent protein to detect expression of nif genes of Azoarcus sp. BH72, a grass-associated diazotroph, on rice roots. Mol. Plant-Microbe Interact. 11:71-75. (Pubitemid 28158968)
9. Egener, T., Hurek, T., and Reinhold-Hurek, B. 1999. Endophytic expression of nif genes of Azoarcus sp. strain BH72 in rice roots. Mol. Plant- Microbe Interact. 12:813-819. (Pubitemid 29402958)
10. Figurski, D. H., and Helinski, D. R. 1979. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. U.S.A. 76:1648-1652. (Pubitemid 9175374)
11. Finn, R. D., Mistry, J., Schuster-Bockler, B., Griffiths-Jones, S., Hollich, V., Lassmann, T., Moxon, S., Marshall, M., Khanna, A., Durbin, R., Eddy, S. R., Sonnhammer, E. L., and Bateman, A. 2006. Pfam: Clans, web tools and services. Nucleic Acids Res. 34:D247-251.
12. Hauberg, L., Schmidt, F., Scharf, C., Dörr, J., Völker, U., and Reinhold-Hurek, B. 2010. Proteomic characterization of a pilR regulatory mutant of Azoarcus sp. strain BH72 with the aid of gel-based and gel-free approaches. Proteomics 10:458-469.
13. Hurek, T., Reinhold-Hurek, B., Van Montagu, M., and Kellenberger, E. 1994. Root colonization and systemic spreading of Azoarcus sp. Strain BH72 in grasses. J. Bacteriol. 176:1913-1923. (Pubitemid 24103539)
14. Hurek, T., Van Montagu, M., Kellenberger, E., and Reinhold-Hurek, B. 1995. Induction of complex intracytoplasmic membranes related to nitrogen fixation in Azoarcus sp. BH72. Mol. Microbiol. 18:225-236.
15. Jefferson, R. A., Burgess, S. M., and Hirsh, D. 1986. Beta glucuronidase from Escherichia coli as a gene-fusion marker. Proc. Natl. Acad. Sci. U.S.A. 83:8447-8451. (Pubitemid 17194890)
16. Karg, T., and Reinhold-Hurek, B. 1996. Global changes in protein composition of N2-fixing Azoarcus sp. strain BH72 upon diazosome formation. J. Bacteriol. 178:5748-5754. (Pubitemid 26327677)
17. Kirchner, O., and Tauch, A. 2003. Tools for genetic engineering in the amino acid-producing bacterium Corynebacterium glutamicum. J. Biotechnol. 104:287-299. (Pubitemid 37011364)
18. Kotrbova-Kozak, A., Kotrba, P., Inui, M., Sajdok, J., and Yukawa, H. 2007. Transcriptionally regulated adhA gene encodes alcohol dehydrogenase required for ethanol and n-propanol utilization in Corynebacterium glutamicum R. Appl. Microbiol. Biotechnol. 76:1347-1356. (Pubitemid 47459769)
19. Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Böhm, M., Friedrich, F., Hurek, T., Krause, L., Linke, B., McHardy, A., Sarkar, A., Schneiker, S., Syed, A. A., Thauer, R., Vorhölter, F., Weidner, S., Pühler, A., Reinhold-Hurek, B., Kaiser, A., and Goesmann, A. 2006. Genomic insights into the lifestyle of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72. Nat. Biotechnol. 24:1385-1391. (Pubitemid 44722102)
20. Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. L. 2001. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol. 305:567-580. (Pubitemid 33032862)
21. Marchler-Bauer, A., Anderson, J. B., Derbyshire, M. K., DeWeese-Scott, C., Gonzales, N. R., Gwadz, M., Hao, L., He, S., Hurwitz, D. I., Jackson, J. D., Ke, Z., Krylov, D., Lanczycki, C. J., Liebert, C. A., Liu, C., Lu, F., Lu, S., Marchler, G. H., Mullokandov, M., Song, J. S., Thanki, N., Yamashita, R. A., Yin, J. J., Zhang, D., and Bryant, S. H. 2007. CDD: A conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35:D237-240. (Pubitemid 46056206)
22. Miché, L., Battistoni, F., Gemmer, S., Belghazi, M., and Reinhold-Hurek, B. 2006. Upregulation of jasmonate-inducible defense proteins and differential colonization of roots of Oryza sativa cultivars with the endophyte Azoarcus sp. Mol. Plant-Microbe Interact. 19:502-511. (Pubitemid 43668274)
23. Mustroph, A., and Albrecht, G. 2003. Tolerance of crop plants to oxygen deficiency stress: Fermentative activity and photosynthetic capacity of entire seedlings under hypoxia and anoxia. Physiol. Plant. 117:508-520. (Pubitemid 36573140)
24. Mustroph, A., Boamfa, E. I., Laarhoven, L. J., Harren, F. J., Albrecht, G., and Grimm, B. 2006. Organ-specific analysis of the anaerobic primary metabolism in rice and wheat seedlings. I: Dark ethanol production is dominated by the shoots. Planta 225:103-114. (Pubitemid 44749608)
25. Prentki, P., and Krisch, H. M. 1984. In vitro insertional mutagenesis with a selectable DNA Fragment. Gene 29:303-314.
26. Radianingtyas, H., and Wright, P. C. 2003. Alcohol dehydrogenases from thermophilic and hyperthermophilic archaea and bacteria. FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Rev. 27:593-616. (Pubitemid 37456859)
27. Reid, M. F., and Fewson, C. A. 1994. Molecular characterization of microbial alcohol dehydrogenases. Crit. Rev. Microbiol. 20:13-56. (Pubitemid 24093757)
28. Reinhold, B., Hurek, T., and Fendrik, I. 1985. Strain-specific chemotaxis of Azospirillum spp. J. Bacteriol. 162:190-195.
29. Reinhold, B., Hurek, T., Niemann, E.-G., and Fendrik, I. 1986. Close association of Azospirillum and diazotrophic rods with different root zones of Kallar grass. Appl. Environ. Microbiol. 52:520-526.
30. Reinhold-Hurek, B., and Hurek, T. 1998. Life in grasses: Diazotrophic endophytes. Trends Microbiol. 6:139-144. (Pubitemid 28197802)
31. Reinhold-Hurek, B., Hurek, T., Claeyssens, M., and Van Montagu, M. 1993a. Cloning, expression in Escherichia coli, and characterization of cellulolytic enzymes of Azoarcus sp., a root-invading diazotroph. J. Bacteriol. 175:7056-7065. (Pubitemid 23322458)
32. Reinhold-Hurek, B., Hurek, T., Gillis, M., Hoste, B., Vancanneyt, M., Kersters, K., and De Ley, J. 1993b. Azoarcus gen. nov., nitrogen-fixing proteobacteria associated with roots of Kallar grass (Leptochloa fusca (L.) Kunth) and description of two species Azoarcus indigens sp. nov. and Azoarcus communis sp. nov. Int. J. Syst. Bacteriol. 43:574-584. (Pubitemid 23210440)
33. Reinhold-Hurek, B., Tan, Z., and Hurek, T. 2005. Genus Azoarcus. Pages 890-901 in: Bergey's Manual of Systematic Bacteriology, Vol. 2. G. M. Garrity, ed. Springer Verlag, New York.
34. Reinhold-Hurek, B., Maes, T., Gemmer, S., Van Montagu, M., and Hurek, T. 2006. An endoglucanase is involved in infection of rice roots by the not cellulose-metabolizing endophyte Azoarcus sp. BH72. Mol. Plant-Microbe Interact. 19:181-188. (Pubitemid 43172832)
35. Reinhold-Hurek, B., Krause, A., Leyser, B., Miché, L., and Hurek, T. 2007. The rice apoplast as a habitat for endophytic N2-fixing bacteria. Pages 427-443 in: The Apoplast of Higher Plants: Compartment of Storage, Transport, and Reactions. B. Sattelmacher and W. J. Horst, eds. Springer, Dordrecht, The Netherlands.
36. Sadowsky, M. J., and Bohlool, B. B. 1986. Growth of fast- and slow-growing rhizobia on ethanol. Appl. Environ. Microbiol. 52:951-953. (Pubitemid 16004686)
37. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, U.S.A.
38. Sun, H. W., and Plapp, B. V. 1992. Progressive sequence alignment and molecular evolution of the Zn-containing alcohol dehydrogenase family. J. Mol. Evol. 34:522-535.
39. Toyama, H., Mathews, F. S., Adachi, O., and Matsushita, K. 2004. Quinohemoprotein alcohol dehydrogenases: Structure, function, and physiology. Arch. Biochem. Biophys. 428:10-21. (Pubitemid 38844905)
40. Vangnai, A. S., and Arp, D. J. 2001. An inducible 1-butanol dehydrogenase, a quinohaemoprotein, is involved in the oxidation of butane by "Pseudomonas butanovora". Microbiology 147:745-756. (Pubitemid 32243736)
41. Yanisch-Perron, C., Vieira, J., and Messing, J. 1985. Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119. (Pubitemid 15122816)