Nestedness patterns and the dual nature of community reassembly in California streams: A multivariate permutation-based approach

Global Change Biology

Volumn 17, Issue 12, 2011, Pages 3714-3723

  Novak, Mark ^a   Moore, Jonathan W ^a,b   Leidy, Robert A ^c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b SIMON FRASER UNIVERSITY   (Canada)

^c U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

Author keywords

Body size; Conservation; Disturbance; Extinction risk; Freshwater stream fishes; Invasion risk; Metacommunity structure; Multivariate gradient analysis; Trait based biogeography

Indexed keywords

CLIMATE FEEDBACK; COMMUNITY RESPONSE; EXTINCTION; FEEDBACK MECHANISM; FISH; FRESHWATER ECOSYSTEM; HYPOTHESIS TESTING; INVASIBILITY; INVASIVE SPECIES; NESTEDNESS; QUANTITATIVE ANALYSIS; STREAMWATER; TRIBUTARY;

CALIFORNIA; SAN FRANCISCO BAY; UNITED STATES;

PISCES;

EID: 80054703476     PISSN: 13541013     EISSN: 13652486     Source Type: Journal    
DOI: 10.1111/j.1365-2486.2011.02482.x     Document Type: Article

References (48)

1. Almeida-Neto M, Ulrich W (2011) A straightforward computational approach for measuring nestedness using quantitative matrices. Environmental Modelling & Software, 26, 173-178.
2. Almeida-Neto M, Guimarães PR Jr, Lewinsohn TM (2007) On nestedness analyses: rethinking matrix temperature and anti-nestedness. Oikos, 116, 716-722.
3. Almeida-Neto M, Guimarães P, Guimarães PR Jr, Loyola RD, Ulrich W (2008) A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement. Oikos, 117, 1227-1239.
4. Atmar W, Patterson B (1993) The measure of order and disorder in the distribution of species in fragmented habitat. Oecologia, 96, 373-382.
5. Baltz DM, Moyle PB (1993) Invasion resistance to introduced species by a native assemblage of California stream fishes. Ecological Applications, 3, 246-255.
6. Blanchet S, Leprieur F, Beauchard O, Staes J, Oberdorff T, Brosse S (2009) Broad-scale determinants of non-native fish species richness are context-dependent. Proceedings of the Royal Society B: Biological Sciences, 276, 2385-2394.
7. Cam E, Nichols JD, Hines JE, Sauer JR (2000) Inferences about nested subsets structure when not all species are detected. Oikos, 91, 428-434.
8. Catford JA, Jansson R, Nilsson C (2009) Reducing redundancy in invasion ecology by integrating hypotheses into a single theoretical framework. Diversity and Distributions, 15, 22-40.
9. Dill WA, Cordone AJ (1997) History and status of introduced fishes in California, 1871-1996: conclusions. Fisheries, 22, 15-18.
10. Donlan CJ, Knowlton J, Doak DF, Biavaschi N (2005) Nested communities, invasive species and holocene extinctions: evaluating the power of a potential conservation tool. Oecologia, 145, 475-485.
11. Dudgeon D, Arthington AH, Gessner MO et al. (2006) Freshwater biodiversity: importance, threats, status and conservation challenges. Biological Reviews, 81, 163-182.
12. Elmendorf SC, Harrison SP (2009) Temporal variability and nestedness in California grassland species composition. Ecology, 90, 1492-1497.
13. Fayle TM, Manica A (2010) Reducing over-reporting of deterministic co-occurrence patterns in biotic communities. Ecological Modelling, 221, 2237-2242.
14. Fisher JAD, Frank KT, Leggett WC (2010) Dynamic macroecology on ecological time-scales. Global Ecology and Biogeography, 19, 1-15.
15. Fleishman E, Donnelly R, Fay JP, Reeves R (2007) Applications of nestedness analyses to biodiversity conservation in developing landscapes. Landscape and Urban Planning, 81, 271-281.
16. García-Berthou E (2007) The characteristics of invasive fishes: what has been learned so far? Journal of Fish Biology, 71, 33-55.
17. Gotelli NJ (2000) Null model analysis of species co-occurence patterns. Ecology, 81, 2606-2621.
18. Gross K, Cardinale BJ, Bascompte J (2005) The functional consequences of random vs. ordered species extinctions. Ecology Letters, 8, 409-418.
19. Jelks HL, Walsh SJ, Burkhead NM et al. (2008) Conservation status of imperiled North American freshwater and diadromous fishes. Fisheries, 33, 372-407.
20. Kerr JT, Kharouba HM, Currie DJ (2007) The macroecological contribution to global change solutions. Science, 316, 1581-1584.
21. Leibold MA, Economo EP, Peres-Neto P (2010) Metacommunity phylogenetics: separating the roles of environmental filters and historical biogeography. Ecology Letters, 13, 1290-1299.
22. Leidy RA (2007) Ecology, Assemblage Structure, Distribution, and Status of Fishes in Streams Tributary to the San Francisco Estuary, California. San Francisco Estuary Institute, U.S. Environmental Protection Agency 530, 198.
23. Leidy RA, Fiedler PL (1985) Human disturbance and patterns of fish species diversity in the San Francisco Bay drainage, California. Biological Conservation, 33, 247-267.
24. Light T, Marchetti MP (2007) Distinguishing between invasions and habitat changes as drivers of diversity loss among California's freshwater fishes. Conservation Biology, 21, 434-446.
25. Lomolino MV (1996) Investigating causality of nestedness of insular communities: selective immigrations or extinctions? Journal of Biogeography, 23, 699-703.
26. Marchetti MP, Light T, Moyle PB, Viers JH (2004a) Fish invasions in California watersheds: testing hypotheses using landscape patterns. Ecological Applications, 14, 1507-1525.
27. Marchetti MP, Moyle PB, Levine R (2004b) Alien fishes in California watersheds: characteristics of successful and failed invaders. Ecological Applications, 14, 587-596.
28. Marchetti MP, Moyle PB, Levine R (2004c) Invasive species profiling? Exploring the characteristics of non-native fishes across invasion stages in California. Freshwater Biology, 49, 646-661.
29. McIntyre PB, Jones LE, Flecker AS, Vanni MJ (2007) Fish extinctions alter nutrient recycling in tropical freshwaters. PNAS, 104, 4461-4466.
30. Moyle PB (2002) Inland Fishes of California. University of California Press, Berkeley, CA.
31. Moyle PB, Light T (1996a) Biological invasions of fresh water: empirical rules and assembly theory. Biological Conservation, 78, 149-161.
32. Moyle PB, Light T (1996b) Fish invasions in California: do abiotic factors determine success? Ecology, 77, 1666-1670.
33. Oksanen J, Blanchet FG, Kindt R et al. (2010) vegan: Community Ecology Package v1.17-4. R Foundation for Statistical Computing, Vienna.
34. Olden JD, Kennard MJ, Leprieur F, Tedesco PA, Winemiller KO, García-Berthou E (2010) Conservation biogeography of freshwater fishes: recent progress and future challenges. Diversity and Distributions, 16, 496-513.
35. Patterson BD, Atmar W (1986) Nested subsets and the structure of insular mammalian faunas and archipelagos. Biological Journal of the Linnean Society, 28, 65-82.
36. Peres-Neto PR, Legendre P (2010) Estimating and controlling for spatial structure in the study of ecological communities. Global Ecology and Biogeography, 19, 174-184.
37. Power ME (1990) Effects of fish in river food webs. Science, 250, 811-814.
38. Reynolds JD, Dulvy NK, Goodwin NB, Hutchings JA (2005) Biology of extinction risk in marine fishes. Proceedings: Biological Sciences, 272, 2337-2344.
39. Rosseel Y (2010) lavaan: Latent Variable Analysis, v.0.3-1. R Foundation for Statistical Computing, Vienna.
40. Schindler DE, Carpenter SR, Cole JJ, Kitchell JF, Pace ML (1997) Influence of food web structure on carbon exchange between lakes and the atmosphere. Science, 277, 1302-1306.
41. Stone L, Roberts A (1990) The checkerboard score and species distributions. Oecologia, 85, 74-79.
42. Sutherland WJ, Adams WM, Aronson RB et al. (2009) One hundred questions of importance to the conservation of global biological diversity. Conservation Biology, 23, 557-567.
43. Taylor CM, Warren ML (2001) Dynamics in species composition of stream fish assemblages: environmental variability and nested subsets. Ecology, 82, 2320-2330.
44. Ulrich W, Gotelli NJ (2007) Null model analysis of species nestedness patterns. Ecology, 88, 1824-1831.
45. Ulrich W, Almeida-Neto M, Gotelli NJ (2009) A consumer's guide to nestedness analysis. Oikos, 118, 3-17.
46. Vanni MJ (2003) Nutrient cycling by animals in freshwater ecosystems. Annual Review of Ecology and Systematics, 33, 341-370.
47. White P, Kerr JT (2006) Contrasting spatial and temporal global change impacts on butterfly species richness during the 20th century. Ecography, 29, 908-918.
48. Zavaleta ES, Pasaria J, Moore J, Hernandez D, Suttle KB, Wilmers C (2009) Ecosystem responses to community disassembly. Annals of the New York Academy of Sciences, 1162, 311-333.