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Volumn 413, Issue 3, 2011, Pages 548-560

Interaction with the nascent RNA Is a prerequisite for the recruitment of Rho to the transcription elongation complex in vitro

Author keywords

footprinting; Rho; RNA polymerase; rut site; transcription termination

Indexed keywords

ANTISENSE OLIGONUCLEOTIDE; RHO FACTOR; RIBONUCLEASE; RNA; RNA POLYMERASE; TRANSCRIPTION ELONGATION FACTOR;

EID: 80054684922     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2011.08.053     Document Type: Article
Times cited : (27)

References (31)
  • 1
    • 0037073063 scopus 로고    scopus 로고
    • Rho-dependent termination and ATPases in transcript termination
    • DOI 10.1016/S0167-4781(02)00456-6, PII S0167478102004566
    • Richardson J.P. Rho-dependent termination and ATPases in transcript termination Biochim. Biophys. Acta 1577 2002 251 260 (Pubitemid 35223217)
    • (2002) Biochimica et Biophysica Acta - Gene Structure and Expression , vol.1577 , Issue.2 , pp. 251-260
    • Richardson, J.P.1
  • 2
    • 33646849728 scopus 로고    scopus 로고
    • Rho-dependent transcription termination: More questions than answers
    • Banerjee S., Chalissery J., Bandey I., and Sen R. Rho-dependent transcription termination: more questions than answers J. Microbiol. 44 2006 11 22 (Pubitemid 44891240)
    • (2006) Journal of Microbiology , vol.44 , Issue.1 , pp. 11-22
    • Banerjee, S.1    Chalissery, J.2    Bandey, I.3    Sen, R.4
  • 3
    • 0028068117 scopus 로고
    • The RNA-binding domain of transcription termination factor rho: Isolation, characterization, and determination of sequence limits
    • DOI 10.1021/bi00193a016
    • Modrak D., and Richardson J.P. The RNA-binding domain of transcription termination factor rho: isolation, characterization, and determination of sequence limits Biochemistry 33 1994 8292 8299 (Pubitemid 24241063)
    • (1994) Biochemistry , vol.33 , Issue.27 , pp. 8292-8299
    • Modrak, D.1    Richardson, J.P.2
  • 4
    • 0037559627 scopus 로고    scopus 로고
    • Structure of the Rho transcription terminator: Mechanism of mRNA recognition and helicase loading
    • DOI 10.1016/S0092-8674(03)00512-9
    • Skordalakes E., and Berger J.M. Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading Cell 114 2003 135 146 (Pubitemid 36869001)
    • (2003) Cell , vol.114 , Issue.1 , pp. 135-146
    • Skordalakes, E.1    Berger, J.M.2
  • 5
  • 6
    • 0035830896 scopus 로고    scopus 로고
    • RNA passes through the hole of the protein hexamer in the complex with the Escherichia coli Rho factor
    • Burgess B.R., and Richardson J.P. RNA passes through the hole of the protein hexamer in the complex with the Escherichia coli Rho factor J. Biol. Chem. 276 2001 4182 4189
    • (2001) J. Biol. Chem. , vol.276 , pp. 4182-4189
    • Burgess, B.R.1    Richardson, J.P.2
  • 7
    • 0035861978 scopus 로고    scopus 로고
    • Mutational changes of conserved residues in the Q-loop region of transcription factor Rho greatly reduce secondary site RNA-binding
    • DOI 10.1006/jmbi.2000.5207
    • Wei R.R., and Richardson J.P. Mutational changes of conserved residues in the Q-loop region of transcription factor Rho greatly reduce secondary site RNA-binding J. Mol. Biol. 314 2001 1007 1015 (Pubitemid 34073065)
    • (2001) Journal of Molecular Biology , vol.314 , Issue.5 , pp. 1007-1015
    • Wei, R.R.1    Richardson, J.P.2
  • 8
    • 0037119488 scopus 로고    scopus 로고
    • Mutations in the Rho transcription termination factor that affect RNA tracking
    • Xu Y., Kohn H., and Widger W.R. Mutations in the Rho transcription termination factor that affect RNA tracking J. Biol. Chem. 277 2002 30023 30030
    • (2002) J. Biol. Chem. , vol.277 , pp. 30023-30030
    • Xu, Y.1    Kohn, H.2    Widger, W.R.3
  • 9
    • 0029565119 scopus 로고
    • Structural and functional dissections of transcription termination factor rho by random mutagenesis
    • DOI 10.1006/jmbi.1995.0658
    • Miwa Y., Horiguchi T., and Shigesada K. Structural and functional dissections of transcription termination factor Rho by random mutagenesis J. Mol. Biol. 254 1995 815 837 (Pubitemid 26006854)
    • (1995) Journal of Molecular Biology , vol.254 , Issue.5 , pp. 815-837
    • Miwa, Y.1    Horiguchi, T.2    Shigesada, K.3
  • 10
    • 33750477997 scopus 로고    scopus 로고
    • Structural Insights into RNA-Dependent Ring Closure and ATPase Activation by the Rho Termination Factor
    • DOI 10.1016/j.cell.2006.08.051, PII S0092867406012797
    • Skordalakes E., and Berger J.M. Structural insights into RNA-dependent ring closure and ATPase activation by the Rho termination factor Cell 127 2006 553 564 (Pubitemid 44647425)
    • (2006) Cell , vol.127 , Issue.3 , pp. 553-564
    • Skordalakes, E.1    Berger, J.M.2
  • 11
    • 70350344051 scopus 로고    scopus 로고
    • Running in reverse: The structural basis for translocation polarity in hexameric helicases
    • Thomsen N.D., and Berger J.M. Running in reverse: the structural basis for translocation polarity in hexameric helicases Cell 139 2009 523 534
    • (2009) Cell , vol.139 , pp. 523-534
    • Thomsen, N.D.1    Berger, J.M.2
  • 12
    • 0026027218 scopus 로고
    • A consensus motif common to all Rho-dependent prokaryotic transcription terminators
    • Alifano P., Rivellini F., Limauro D., Bruni C.B., and Carlomagno M.S. A consensus motif common to all Rho-dependent prokaryotic transcription terminators Cell 64 1991 553 563 (Pubitemid 121002971)
    • (1991) Cell , vol.64 , Issue.3 , pp. 553-563
    • Alifano, P.1    Rivellini, F.2    Limauro, D.3    Bruni, C.B.4    Carlomagno, M.S.5
  • 13
    • 0022431528 scopus 로고
    • RNA sequence and secondary structure requirements for rho-dependent transcription termination
    • Morgan W.D., Bear D.G., Litchman B.L., and von Hippel P.H. RNA sequence and secondary structure requirements for rho-dependent transcription termination Nucleic Acids Res. 13 1985 3739 3754
    • (1985) Nucleic Acids Res. , vol.13 , pp. 3739-3754
    • Morgan, W.D.1    Bear, D.G.2    Litchman, B.L.3    Von Hippel, P.H.4
  • 14
    • 33748767376 scopus 로고    scopus 로고
    • Rho-dependent terminators and transcription termination
    • Ciampi M.S. Rho-dependent terminators and transcription termination Microbiology 152 2006 2525 2528
    • (2006) Microbiology , vol.152 , pp. 2525-2528
    • Ciampi, M.S.1
  • 16
    • 0023655931 scopus 로고
    • Sequence elements essential for ρ-dependent transcription termination at λtR1
    • Chen C.Y., and Richardson J.P. Sequence elements essential for ρ-dependent transcription termination at λtR1 J. Biol. Chem. 262 1987 11292 11299
    • (1987) J. Biol. Chem. , vol.262 , pp. 11292-11299
    • Chen, C.Y.1    Richardson, J.P.2
  • 17
    • 0027274614 scopus 로고
    • Deletion analysis of the Escherichia coli rho-dependent transcription terminator trp t'
    • Zalatan F., Galloway-Salvo J., and Platt T. Deletion analysis of the Escherichia coli Rho-dependent transcription terminator trp t′ J. Biol. Chem. 268 1993 17051 17056 (Pubitemid 23236932)
    • (1993) Journal of Biological Chemistry , vol.268 , Issue.23 , pp. 17051-17056
    • Zalatan, F.1    Galloway-Salvo, J.2    Platt, T.3
  • 18
    • 0029831394 scopus 로고    scopus 로고
    • Rho-dependent termination of transcription is governed primarily by the upstream Rho utilization (rut) sequences of a terminator
    • DOI 10.1074/jbc.271.35.21597
    • Richardson L.V., and Richardson J.P. Rho-dependent termination of transcription is governed primarily by the upstream Rho utilization (rut) sequences of a terminator J. Biol. Chem. 271 1996 21597 21603 (Pubitemid 26293029)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.35 , pp. 21597-21603
    • Richardson, L.V.1    Richardson, J.P.2
  • 19
    • 0023898207 scopus 로고
    • Interactions of Escherichia coli transcription termination factor rho with RNA. II. Electron microscopy and nuclease protection experiments
    • Bear D.G., Hicks P.S., Escudero K.W., Andrews C.L., McSwiggen J.A., and von Hippel P.H. Interactions of Escherichia coli transcription termination factor rho with RNA. II. Electron microscopy and nuclease protection experiments J. Mol. Biol. 199 1988 623 635
    • (1988) J. Mol. Biol. , vol.199 , pp. 623-635
    • Bear, D.G.1    Hicks, P.S.2    Escudero, K.W.3    Andrews, C.L.4    McSwiggen, J.A.5    Von Hippel, P.H.6
  • 21
    • 74549191169 scopus 로고    scopus 로고
    • An allosteric mechanism of Rho-dependent transcription termination
    • Epshtein V., Dutta D., Wade J., and Evgeny N. An allosteric mechanism of Rho-dependent transcription termination Nature 463 2010 245 249
    • (2010) Nature , vol.463 , pp. 245-249
    • Epshtein, V.1    Dutta, D.2    Wade, J.3    Evgeny, N.4
  • 22
    • 79960395328 scopus 로고    scopus 로고
    • Bacterial transcription terminators: The RNA 3′-end chronicles
    • 10.1016/j.jmb.2011.03.036
    • Peters J.M., Vangeloff A.B., and Landick R. Bacterial transcription terminators: the RNA 3′-end chronicles J. Mol. Biol. 2011 10.1016/j.jmb.2011.03.036
    • (2011) J. Mol. Biol.
    • Peters, J.M.1    Vangeloff, A.B.2    Landick, R.3
  • 23
    • 0021739701 scopus 로고
    • Binding of rho factor to Escherichia coli RNA polymerase mediated by nusA protein
    • Schmidt M.C., and Chamberlin M.J. Binding of rho factor to Escherichia coli RNA polymerase mediated by nusA protein J. Bio. Chem. 259 1984 15000 15002 (Pubitemid 15191289)
    • (1984) Journal of Biological Chemistry , vol.259 , Issue.24 , pp. 15000-15002
    • Schmidt, M.C.1    Chamberlin, M.J.2
  • 24
    • 0026527997 scopus 로고
    • Requirement for E. coli NusG protein in factor-dependent transcription termination
    • Sullivan S.L., and Gottesman M.E. Requirement for E. coli NusG protein in factor-dependent transcription termination Cell 68 1992 989 995
    • (1992) Cell , vol.68 , pp. 989-995
    • Sullivan, S.L.1    Gottesman, M.E.2
  • 25
    • 12044255564 scopus 로고
    • Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcription
    • Li J., Mason S.W., and Greenblatt J. Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcription Genes Dev. 7 1993 161 172
    • (1993) Genes Dev. , vol.7 , pp. 161-172
    • Li, J.1    Mason, S.W.2    Greenblatt, J.3
  • 26
    • 78650418915 scopus 로고    scopus 로고
    • Interaction surface of the transcription terminator Rho required to form a complex with the C-terminal domain of the antiterminator NusG
    • Chalissery J., Muteeb G., Kalarickal N., Mohan S., Jisha V., and Sen R. Interaction surface of the transcription terminator Rho required to form a complex with the C-terminal domain of the antiterminator NusG J. Mol. Biol. 405 2011 49 64
    • (2011) J. Mol. Biol. , vol.405 , pp. 49-64
    • Chalissery, J.1    Muteeb, G.2    Kalarickal, N.3    Mohan, S.4    Jisha, V.5    Sen, R.6
  • 28
    • 34548667500 scopus 로고    scopus 로고
    • Transcription Termination Defective Mutants of Rho: Role of Different Functions of Rho in Releasing RNA from the Elongation Complex
    • DOI 10.1016/j.jmb.2007.06.013, PII S0022283607007838
    • Chalissery J., Banerjee S., Bandey I., and Sen R. Transcription termination defective mutants of Rho: role of different functions of Rho in releasing RNA from the elongation complex J. Mol. Biol. 371 2007 855 872 (Pubitemid 47411455)
    • (2007) Journal of Molecular Biology , vol.371 , Issue.4 , pp. 855-872
    • Chalissery, J.1    Banerjee, S.2    Bandey, I.3    Sen, R.4
  • 29
    • 0033582469 scopus 로고    scopus 로고
    • Activation of Rho-dependent transcription termination by NusG. Dependence on terminator location and acceleration of RNA release
    • Burns C.M., Nowatzke W.L., and Richardson J.P. Activation of Rho-dependent transcription termination by NusG. Dependence on terminator location and acceleration of RNA release J. Biol. Chem. 274 1999 5245 5251
    • (1999) J. Biol. Chem. , vol.274 , pp. 5245-5251
    • Burns, C.M.1    Nowatzke, W.L.2    Richardson, J.P.3
  • 30
    • 23944518352 scopus 로고    scopus 로고
    • Escherichia coli RNA polymerase mutations located near the upstream edge of an RNA:DNA hybrid and the beginning of the RNA-exit channel are defective for transcription antitermination by the N protein from lambdoid phage H-19B
    • DOI 10.1016/j.jmb.2005.06.052, PII S0022283605007230
    • Cheeran A., Suganthan R., Swapna G., Bandey I., Acharya S., Nagarajaram H.A., and Sen R. E. coli RNA polymerase mutations impaired for H19B N specific transcription antitermination are located close to the upstream edge of RNA:DNA hybrid and beginning of RNA exit channel of elongation complex J. Mol. Biol. 252 2005 28 43 (Pubitemid 41207439)
    • (2005) Journal of Molecular Biology , vol.352 , Issue.1 , pp. 28-43
    • Cheeran, A.1    Suganthan, R.B.2    Swapna, G.3    Bandey, I.4    Achary, M.S.5    Nagarajaram, H.A.6    Sen, R.7
  • 31
    • 0034533887 scopus 로고    scopus 로고
    • N-mediated transcription antitermination in lambdoid phage H-19B is characterized by alternative NUT RNA structures and a reduced requirement for host factors
    • DOI 10.1046/j.1365-2958.2000.02217.x
    • Neely N.M., and Friedman D.I. N-mediated transcription antitermination in lambdoid phage H-19B is characterized by alternative NUT RNA structures and a reduced requirement for host factors Mol. Microbiol. 38 2000 1074 1085 (Pubitemid 32009681)
    • (2000) Molecular Microbiology , vol.38 , Issue.5 , pp. 1074-1085
    • Neely, M.N.1    Friedman, D.I.2


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