-
1
-
-
0032582513
-
Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4
-
Nichols J, Zevnik B, Anastassiadis K, Niwa H, Klewe-Nebenius D, Chambers I, Schöler H, Smith A. Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4. Cell 1998, 95:379-391.
-
(1998)
Cell
, vol.95
, pp. 379-391
-
-
Nichols, J.1
Zevnik, B.2
Anastassiadis, K.3
Niwa, H.4
Klewe-Nebenius, D.5
Chambers, I.6
Schöler, H.7
Smith, A.8
-
2
-
-
0034028901
-
Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells.
-
Niwa H, Miyazaki J, Smith AG. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nature Genetics 2000, 24:372-376.
-
(2000)
Nature Genetics
, vol.24
, pp. 372-376
-
-
Niwa, H.1
Miyazaki, J.2
Smith, A.G.3
-
3
-
-
0037227099
-
Multipotent cell lineages in early mouse development depend on Sox2 function
-
Avilion AA, Nicolis SK, Pevny LH, Perez L, Vivian N, Lovell-Badge R. Multipotent cell lineages in early mouse development depend on Sox2 function. Gene and Development 2003, 17:126-140.
-
(2003)
Gene and Development
, vol.17
, pp. 126-140
-
-
Avilion, A.A.1
Nicolis, S.K.2
Pevny, L.H.3
Perez, L.4
Vivian, N.5
Lovell-Badge, R.6
-
4
-
-
0038143611
-
Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells
-
Chambers I, Colby D, Robertson M, Nichols J, Lee S, Tweedie S, Smith A. Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell 2003, 113:643-655.
-
(2003)
Cell
, vol.113
, pp. 643-655
-
-
Chambers, I.1
Colby, D.2
Robertson, M.3
Nichols, J.4
Lee, S.5
Tweedie, S.6
Smith, A.7
-
5
-
-
0037806031
-
The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells
-
Mitsui K, Tokuzawa Y, Itoh H, Segawa K, Murakami M, Takahashi K, Maruyama M, Maeda M, Yamanaka S. The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell 2003, 113:631-642.
-
(2003)
Cell
, vol.113
, pp. 631-642
-
-
Mitsui, K.1
Tokuzawa, Y.2
Itoh, H.3
Segawa, K.4
Murakami, M.5
Takahashi, K.6
Maruyama, M.7
Maeda, M.8
Yamanaka, S.9
-
6
-
-
0032127977
-
Self-renewal of pluripotent embryonic stem cells is mediated via activation of STAT3
-
Niwa H, Burdon T, Chambers I, Smith A. Self-renewal of pluripotent embryonic stem cells is mediated via activation of STAT3. Gene and Development 1998, 12:2048-2060.
-
(1998)
Gene and Development
, vol.12
, pp. 2048-2060
-
-
Niwa, H.1
Burdon, T.2
Chambers, I.3
Smith, A.4
-
7
-
-
0344845415
-
BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3
-
Ying QL, Nichols J, Chambers I, Smith A. BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3. Cell 2003, 115:281-292.
-
(2003)
Cell
, vol.115
, pp. 281-292
-
-
Ying, Q.L.1
Nichols, J.2
Chambers, I.3
Smith, A.4
-
8
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 2006, 126(4):663-676.
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
9
-
-
33746773659
-
Dissecting self-renewal in stem cells with RNA interference
-
Ivanova N, Dobrin R, Lu R, Kotenko I, Levorse J, DeCoste C, Schafer X, Lun Y, Lemischka IR. Dissecting self-renewal in stem cells with RNA interference. Nature 2006, 442(3):533-538.
-
(2006)
Nature
, vol.442
, Issue.3
, pp. 533-538
-
-
Ivanova, N.1
Dobrin, R.2
Lu, R.3
Kotenko, I.4
Levorse, J.5
DeCoste, C.6
Schafer, X.7
Lun, Y.8
Lemischka, I.R.9
-
10
-
-
34147117905
-
Zfx controls the self-renewal of embryonic and hematopoietic stem cells
-
Galan-Caridad JM, Harel S, Arenzana TL, Hou ZE, Doetsch FK, Mirny LA, Reizis B. Zfx controls the self-renewal of embryonic and hematopoietic stem cells. Cell 2007, 129:345-357.
-
(2007)
Cell
, vol.129
, pp. 345-357
-
-
Galan-Caridad, J.M.1
Harel, S.2
Arenzana, T.L.3
Hou, Z.E.4
Doetsch, F.K.5
Mirny, L.A.6
Reizis, B.7
-
11
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
Chen X, Xu H, Yuan P, Fang F, Huss M, Vega VB, Wong E, Orlov YL, Zhang W, Jiang J, Loh YH, Yeo HC, Yeo ZX, Narang V, Govindarajan KR, Leong B, Shahab A, Ruan Y, Bourque G, Sung WK, Clarke ND, Wei CL, Ng HH. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 2008, 133:1106-1117.
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
Loh, Y.H.11
Yeo, H.C.12
Yeo, Z.X.13
Narang, V.14
Govindarajan, K.R.15
Leong, B.16
Shahab, A.17
Ruan, Y.18
Bourque, G.19
Sung, W.K.20
Clarke, N.D.21
Wei, C.L.22
Ng, H.H.23
more..
-
12
-
-
40749104852
-
An extended transcriptional network for pluripotency of embryonic stem cells
-
Kim J, Chu J, Shen X, Wang J, Orkin SH. An extended transcriptional network for pluripotency of embryonic stem cells. Cell 2008, 132:1049-1061.
-
(2008)
Cell
, vol.132
, pp. 1049-1061
-
-
Kim, J.1
Chu, J.2
Shen, X.3
Wang, J.4
Orkin, S.H.5
-
13
-
-
48449084118
-
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
-
Marson A, Levine SS, Cole MF, Frampton GM, Brambrink T, Johnstone S, Guenther MG, Johnston WK, Wernig M, Newman J, Calabrese JM, Dennis LM, Volkert TL, Gupta S, Love J, Hannett N, Sharp PA, Bartel DP, Jaenisch R, Young RA. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 2008, 134(3):521-533.
-
(2008)
Cell
, vol.134
, Issue.3
, pp. 521-533
-
-
Marson, A.1
Levine, S.S.2
Cole, M.F.3
Frampton, G.M.4
Brambrink, T.5
Johnstone, S.6
Guenther, M.G.7
Johnston, W.K.8
Wernig, M.9
Newman, J.10
Calabrese, J.M.11
Dennis, L.M.12
Volkert, T.L.13
Gupta, S.14
Love, J.15
Hannett, N.16
Sharp, P.A.17
Bartel, D.P.18
Jaenisch, R.19
Young, R.A.20
more..
-
15
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
Cloonan N, Forrest ARR, Kolle G, Gardiner BBA, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nature Methods 2008, 5:613-619.
-
(2008)
Nature Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.R.2
Kolle, G.3
Gardiner, B.B.A.4
Faulkner, G.J.5
Brown, M.K.6
Taylor, D.F.7
Steptoe, A.L.8
Wani, S.9
Bethel, G.10
Robertson, A.J.11
Perkins, A.C.12
Bruce, S.J.13
Lee, C.C.14
Ranade, S.S.15
Peckham, H.E.16
Manning, J.M.17
McKernan, K.J.18
Grimmond, S.M.19
-
16
-
-
36749083429
-
A gene regulatory network in mouse embryonic stem cells
-
Zhou Q, Chipperfield H, Melton DA, Wong WH. A gene regulatory network in mouse embryonic stem cells. The Proceedings of the National Academy of Sciences of the United States of America 2007, 104(42):16438-16443.
-
(2007)
The Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.42
, pp. 16438-16443
-
-
Zhou, Q.1
Chipperfield, H.2
Melton, D.A.3
Wong, W.H.4
-
18
-
-
0033976586
-
TRANSFAC: An integrated system for gene expression regulation
-
Wingender E, Chen X, Hehl R, Karas H, Liebich I, Matys V, Meinhardt T, Prüß M, Reuter I, Schacherer F. TRANSFAC: An integrated system for gene expression regulation. Nucleic Acids Research 2000, 28:316-319.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 316-319
-
-
Wingender, E.1
Chen, X.2
Hehl, R.3
Karas, H.4
Liebich, I.5
Matys, V.6
Meinhardt, T.7
Prüß, M.8
Reuter, I.9
Schacherer, F.10
-
19
-
-
63249092765
-
Persistently activated STAT3 maintains constitutive NF-κB activity in tumors
-
Lee H, Herrmann A, Deng JH, Kujawski M, Niu G, Li Z, Forman S, Jove R, Pardoll DM, Yu H. Persistently activated STAT3 maintains constitutive NF-κB activity in tumors. Cancer Cell 2009, 15(4):283-293.
-
(2009)
Cancer Cell
, vol.15
, Issue.4
, pp. 283-293
-
-
Lee, H.1
Herrmann, A.2
Deng, J.H.3
Kujawski, M.4
Niu, G.5
Li, Z.6
Forman, S.7
Jove, R.8
Pardoll, D.M.9
Yu, H.10
-
20
-
-
0038324070
-
Regulation of Smad signaling through a differential recruitment of coactivators and corepressors by ZEB proteins
-
Postigo AA, Depp JL, Taylor JJ, Kroll KL. Regulation of Smad signaling through a differential recruitment of coactivators and corepressors by ZEB proteins. The EMBO Journal 2003, 22:2453-2462.
-
(2003)
The EMBO Journal
, vol.22
, pp. 2453-2462
-
-
Postigo, A.A.1
Depp, J.L.2
Taylor, J.J.3
Kroll, K.L.4
-
21
-
-
22244487659
-
Genetic regulation of stem cell origins in the mouse embryo
-
Ralston A, Rossant J. Genetic regulation of stem cell origins in the mouse embryo. Clinical Genetics 2005, 68:106-112.
-
(2005)
Clinical Genetics
, vol.68
, pp. 106-112
-
-
Ralston, A.1
Rossant, J.2
-
22
-
-
2542628846
-
Otx2 regulates the extent, identity and fate of neuronal progenitor domains in the ventral midbrain
-
Puelles E, Annino A, Tuorto F, Usiello A, Acampora D, Czerny T, Brodski C, Ang SL, Wurst W, Simeone A. Otx2 regulates the extent, identity and fate of neuronal progenitor domains in the ventral midbrain. Development 2004, 131(9):2037-2048.
-
(2004)
Development
, vol.131
, Issue.9
, pp. 2037-2048
-
-
Puelles, E.1
Annino, A.2
Tuorto, F.3
Usiello, A.4
Acampora, D.5
Czerny, T.6
Brodski, C.7
Ang, S.L.8
Wurst, W.9
Simeone, A.10
-
23
-
-
33745236681
-
Otx2 controls identity and fate of glutamatergic progenitors of the thalamus by repressing GABAergic differentiation
-
Puelles E, Acampora D, Gogoi R, Tuorto F, Papalia A, Guillemot F, Ang SL, Simeone A. Otx2 controls identity and fate of glutamatergic progenitors of the thalamus by repressing GABAergic differentiation. The Journal of Neuroscience 2006, 26(22):5955-5964.
-
(2006)
The Journal of Neuroscience
, vol.26
, Issue.22
, pp. 5955-5964
-
-
Puelles, E.1
Acampora, D.2
Gogoi, R.3
Tuorto, F.4
Papalia, A.5
Guillemot, F.6
Ang, S.L.7
Simeone, A.8
-
24
-
-
13944273471
-
P53 induces differentiation of mouse embryonic stem cells by suppressing Nanog expression
-
Lin T, Chao C, Saito S, Mazur SJ, Murphy ME, Appella E, Xu Y. p53 induces differentiation of mouse embryonic stem cells by suppressing Nanog expression. Nature Cell Biology 2004, 7:165-171.
-
(2004)
Nature Cell Biology
, vol.7
, pp. 165-171
-
-
Lin, T.1
Chao, C.2
Saito, S.3
Mazur, S.J.4
Murphy, M.E.5
Appella, E.6
Xu, Y.7
-
26
-
-
40249093059
-
A core Klf circuitry regulates self-renewal of embryonic stem cells
-
Jiang J, Chan YS, Loh YH, Cai J, Tong GQ, Lim CA, Robson P, Zhong S, Ng HH. A core Klf circuitry regulates self-renewal of embryonic stem cells. Nature Cell Biology 2008, 10:353-360.
-
(2008)
Nature Cell Biology
, vol.10
, pp. 353-360
-
-
Jiang, J.1
Chan, Y.S.2
Loh, Y.H.3
Cai, J.4
Tong, G.Q.5
Lim, C.A.6
Robson, P.7
Zhong, S.8
Ng, H.H.9
-
27
-
-
70450270857
-
Oct4 and LIF/STAT3 additively induce Krüppel factors to sustain embryonic stem cell self-renewal
-
Hall J, Guo G, Wray J, Eyres I, Nichols J, Grotewold L, Morfopoulou S, Humphreys P, Mansfield W, Walker R, Tomlinson S, Smith A. Oct4 and LIF/STAT3 additively induce Krüppel factors to sustain embryonic stem cell self-renewal. Cell Stem Cell 2009, 5(6):597-609.
-
(2009)
Cell Stem Cell
, vol.5
, Issue.6
, pp. 597-609
-
-
Hall, J.1
Guo, G.2
Wray, J.3
Eyres, I.4
Nichols, J.5
Grotewold, L.6
Morfopoulou, S.7
Humphreys, P.8
Mansfield, W.9
Walker, R.10
Tomlinson, S.11
Smith, A.12
-
28
-
-
0035115278
-
Activation of the Notch-regulated transcription factor CBF1/RBP-Jκ through the 13SE1A oncoprotein
-
Ansieau S, Strobl LJ, Leutz A. Activation of the Notch-regulated transcription factor CBF1/RBP-Jκ through the 13SE1A oncoprotein. Gene and Development 2001, 15:380-385.
-
(2001)
Gene and Development
, vol.15
, pp. 380-385
-
-
Ansieau, S.1
Strobl, L.J.2
Leutz, A.3
-
29
-
-
16844366556
-
RBPjκ-dependent Notch function regulates Gata2 and is essential for the formation of intra-embryonic hematopoietic cells
-
Robert-Moreno A, Espinosa L, de la Pompa JL, Bigas A. RBPjκ-dependent Notch function regulates Gata2 and is essential for the formation of intra-embryonic hematopoietic cells. Development 2005, 132:1117-1126.
-
(2005)
Development
, vol.132
, pp. 1117-1126
-
-
Robert-Moreno, A.1
Espinosa, L.2
de la Pompa, J.L.3
Bigas, A.4
-
30
-
-
34247264419
-
Zic3 is required for maintenance of pluripotency in embryonic stem cells
-
Lim LS, Loh YH, Zhang W, Li Y, Chen X, Wang Y, Bakre M, Ng HH, Stanton LW. Zic3 is required for maintenance of pluripotency in embryonic stem cells. Molecular Biology of the Cell 2007, 18:1348-1358.
-
(2007)
Molecular Biology of the Cell
, vol.18
, pp. 1348-1358
-
-
Lim, L.S.1
Loh, Y.H.2
Zhang, W.3
Li, Y.4
Chen, X.5
Wang, Y.6
Bakre, M.7
Ng, H.H.8
Stanton, L.W.9
-
31
-
-
43449100341
-
REST maintains self-renewal and pluripotency of embryonic stem cells
-
Singh SK, Kagalwala MN, Parker-Thornburg J, Adams H, Majumder S. REST maintains self-renewal and pluripotency of embryonic stem cells. Nature 2008, 453(7192):223-227.
-
(2008)
Nature
, vol.453
, Issue.7192
, pp. 223-227
-
-
Singh, S.K.1
Kagalwala, M.N.2
Parker-Thornburg, J.3
Adams, H.4
Majumder, S.5
-
32
-
-
47249118465
-
Extracting sequence features to predict protein-DNA interactions: a comparative study
-
Zhou Q, Liu JS. Extracting sequence features to predict protein-DNA interactions: a comparative study. Nucleic Acids Research 2008, 36(12):4137-4148.
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.12
, pp. 4137-4148
-
-
Zhou, Q.1
Liu, J.S.2
-
33
-
-
55749094855
-
An integrated software system for analyzing ChIP-chip and ChIP-seq data
-
Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH. An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nature Biotechnology 2008, 26:1293-1300.
-
(2008)
Nature Biotechnology
, vol.26
, pp. 1293-1300
-
-
Ji, H.1
Jiang, H.2
Ma, W.3
Johnson, D.S.4
Myers, R.M.5
Wong, W.H.6
-
34
-
-
33845661128
-
A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors
-
Ji H, Vokes SA, Wong WH. A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors. Nucleic Acids Research 2006, 34(21):e146.
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.21
-
-
Ji, H.1
Vokes, S.A.2
Wong, W.H.3
-
35
-
-
0003443397
-
Density estimation for statistics and data analysis
-
Chapman and Hall/CRC
-
Silverman BW. Density estimation for statistics and data analysis. 1986, Chapman and Hall/CRC.
-
(1986)
-
-
Silverman, B.W.1
-
36
-
-
0038005018
-
DAVID: Database for annotation, visualization, and integrated discovery
-
Dennis G, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA. DAVID: Database for annotation, visualization, and integrated discovery. Genome Biology 2003, 4:R60.
-
(2003)
Genome Biology
, vol.4
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
38
-
-
59649083954
-
A role for Sox2 in the generation of microtubule-associated protein 2-positive cells from microglia
-
Nonaka H, Niidome T, Shinozuka Y, Akaike A, Kihara T, Sugimoto H. A role for Sox2 in the generation of microtubule-associated protein 2-positive cells from microglia. Biochemical and Biophysical Research Communications 2009, 380:60-64.
-
(2009)
Biochemical and Biophysical Research Communications
, vol.380
, pp. 60-64
-
-
Nonaka, H.1
Niidome, T.2
Shinozuka, Y.3
Akaike, A.4
Kihara, T.5
Sugimoto, H.6
-
39
-
-
58149378334
-
Genome-wide analysis reveals Sall4 to be a major regulator of pluripotency in murine-embryonic stem cells
-
Yang J, Chai L, Fowles TC, Alipio Z, Xu D, Fink LM, Ward DC, Ma Y. Genome-wide analysis reveals Sall4 to be a major regulator of pluripotency in murine-embryonic stem cells. The Proceedings of the National Academy of Sciences of the United States of America 2008, 105(50):19756-19761.
-
(2008)
The Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.50
, pp. 19756-19761
-
-
Yang, J.1
Chai, L.2
Fowles, T.C.3
Alipio, Z.4
Xu, D.5
Fink, L.M.6
Ward, D.C.7
Ma, Y.8
|