A molecular phylogeny of the tamarins (genus Saguinus) based on five nuclear sequence data from regions containing Alu insertions

American Journal of Physical Anthropology

Volumn 146, Issue 3, 2011, Pages 385-391

  Da Cunha, Divino Bruno ^a   Monteiro, Eliene ^a   Vallinoto, Marcelo ^a   Sampaio, Iracilda ^a   Ferrari, Stephen F ^b   Schneider, Horacio ^a  

^a FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^b FEDERAL UNIVERSITY OF SERGIPE   (Brazil)

Author keywords

Amazonian primates; Callitrichinae; Cebidae; nuclear DNA

Indexed keywords

CELL NUCLEUS DNA; MITOCHONDRIAL DNA;

ALU SEQUENCE; ARTICLE; BRAZIL; CALLITRICHINAE; CEBIDAE; COLOMBIA; DNA SEQUENCE; EVOLUTION; GENETIC DISTANCE; GENOME; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIMATE; SAGUINUS; SINGLE NUCLEOTIDE POLYMORPHISM;

ALU ELEMENTS; ANIMALS; BAYES THEOREM; DNA; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; PHYLOGENY; SAGUINUS;

EID: 80054100753     PISSN: 00029483     EISSN: 10968644     Source Type: Journal    
DOI: 10.1002/ajpa.21587     Document Type: Article

References (42)

1. Araripe J, Tagliaro CH, Rego PS, Sampaio I, Ferrari SF, Schneider H,. 2008. Molecular phylogenetics of large-bodied tamarins, Saguinus spp. (Primates, Platyrrhini). Zool Scripta 37: 461-467.
2. Arnold ML,. 2009. Reticulate evolution and humans. Oxford: Oxford University Press.
3. Arnold ML, Meyer A,. 2006. Natural hybridization in primates: one evolutionary mechanism. Zoology 109: 261-276. (Pubitemid 44572717)
4. Ayres JM, Clutton-Brock TH,. 1992. River boundaries and species range size in Amazonian primates. Am Nat 140: 531-537.
5. Batzer MA, Deininger PL,. 2002. Alu repeats and human genomic diversity. Nat Rev Genet 3: 370-379. (Pubitemid 34506718)
6. Brown WM, George M, Wilson AC,. 1979. Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci USA 76: 1967-1971. (Pubitemid 9207037)
7. Canavez FC, Moreira MAM, Simon F, Parham P, Seuanez HN,. 1999. Phylogenetic relationships of the callitrichinae (Platyrrhini, Primates) based on β2-microglobulin DNA sequences. Am J Primatol 48: 225-236. (Pubitemid 29275969)
8. Cropp SJ, Larson A, Cheverud JM,. 1999. Historical biogeography of tamarins, genus Saguinus: the molecular phylogenetic evidence. Am J Phys Anthropol 108: 65-89. (Pubitemid 29029819)
9. Drummond A, Rambaut A,. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
10. Farris JS, Kallersjo M, Kluge AG, Bult CJ,. 1995. Constructing a significance test for incongruence. Syst Biol 44: 570-572.
11. Felsenstein J,. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
12. Ferrari SF, 2004. Biogeography of Amazonian primates. In:, Chiarello AG, and, Mendes SL, editors. A Primatologia no Brasil-8. Santa Teresa: Sociedade Brasileira de Primatologia. p 101-122.
13. Hall TA,. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
14. Hamdi H, Nishio H, Zielinski R, Dugaiczyk A,. 1999. Origin and phylogenetic distribution of Alu DNA repeats: irreversible events in the evolution of primates. J Mol Biol 289: 861-871. (Pubitemid 29306655)
15. Hershkovitz P,. 1977. Living New World monkeys (Platyrrhini), with an introduction to primates. Chicago: University of Chicago Press.
16. Hillis DM,. 1999. SINEs of the perfect character. Proc Natl Acad Sci USA 96: 9979-9981. (Pubitemid 29422491)
17. Huelsenbeck JP, Ronquist F,. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. (Pubitemid 32851390)
18. Jacobs SC, Larson A, Cheverud JM,. 1995. Phylogenetic relationships and orthogenetic evolution of coat color among tamarins (Genus Saguinus). Syst Biol 44: 515-532. (Pubitemid 126021226)
19. Mapes RW,. 2009. Past and present provenance of the Amazon River drainage basin. (Ph.D. Thesis): University of North Carolina.
20. Mapes RW, Coleman DS, Nogueira ACR, Housh TB,. 2004. How far do zircons travel? Evaluating the significance of detrital zircon provenance using the modern Amazon River fluvial system. Geological Society of America Abstracts with Programs, Vol. 36, p 78.
21. Matauschek C, Roos C, Heymann EW,. 2011. Mitochondrial phylogeny of tamarins (Saguinus. Hoffmannsegg 1807) with taxonomic and biogeographic implications for the S. nigricollis species group. Am J Phys Anthropol 144: 564-574.
22. Meireles C, Sampaio I, Schneider H, Ferrari SF, Coimbra AF, Pissinatti A, Schneider MPC,. 1997. A comparative study of eleven protein systems in tamarins, genus Saguinus (Platyrrhini, Callitrichinae). Brazil J Genet 20: 13-19. (Pubitemid 27156662)
23. Miyamoto MM,. 1999. Molecular systematics: perfect SINES of evolutionary history? Curr Biol 9: 816-819.
24. Moore AJ, Cheverud JM,. 1992. Systematics of the Saguinus oedipus group of the bare-face tamarins: evidence from facial morphology. Am J Phys Anthropol 89: 73-84.
25. Natori M, Hanihara T,. 1992. Variations in dental measurements between Saguinus species and their systematic relationships. Folia Primatologica 58: 84-92.
26. Opazo JC, Wildman DE, Prychitko T, Johnson RM, Goodman M,. 2006. Phylogenetic relationships and divergence times among New World monkeys (Platyrrhini, Primates). Mol Phylogen Evol 40: 274-280. (Pubitemid 43903642)
27. Posada D,. 2008. jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256. (Pubitemid 351882013)
28. Posada D, Buckley TR,. 2004. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Syst Biol 53: 793-808. (Pubitemid 39568279)
29. Ray DA, Xing J, Hedges DJ, Hall MA, Laborde ME, Anders BA, White BR, Stoilova N, Fowlkes JD, Landry KE, Chemnick LG, Ryder OA, Batzer MA,. 2005. Alu insertion loci and platyrrhine primate phylogeny. Mol Phylogen Evol 35: 117-126. (Pubitemid 40281407)
30. Rossetti DF, Mann de Toledo PM, Goes AM,. 2005. New geological framework for Western Amazonia (Brazil) and implications for biogeography and evolution. Quat Res 63: 78-89. (Pubitemid 40046826)
31. Roy-Engel AM, Carroll ML, El-Sawy M, Salem AH, Garber RK, Nguyen SV, Deininger P, MA B,. 2002. Non-traditional Alu evolution and primate genomic diversity. J Mol Biol 316: 1033-1040. (Pubitemid 34729222)
32. Rylands AB, Coimbra-Filho AF, Mittermeier RA,. 1993. Systematics, geographic distribution, and some notes on the conservation status of the Callitrichidae. In:, Rylands AB, editor. Marmosets and tamarins: systematics, behaviour, and ecology. Oxford: Oxford University Press. p 11-77.
33. Rylands AB, Schneider H, Langguth A, Mittermeier RA, Groves CP, Rodríguez-Luna E,. 2000. An assessment of the diversity of New World primates. Neotrop Primates 8: 61-93.
34. Sambrook J, Fritsch EF, and Maniatis T,. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
35. Schneider H,. 2000. The current status of the New World monkey phylogeny. An Acad Bras Cienc 72: 165-172.
36. Shedlock A, Okada N,. 2000. SINE insertions: powerful tools for molecular systematic. Bioessayes 22: 148-160. (Pubitemid 30092081)
37. Slazay FS, and Delson E,. 1979. Evolutionary history of the primates. New York: Academic Press.
38. Swofford DL,. 2003. PAUP:Phylogenetic Analysis Using Parsimony (and other Methods). 4.0b10 ed. Sunderland, MA: Sinauer Associates.
39. Tagliaro CH, Schneider H, Sampaio I, Schneider MPC, Vallinoto M, Stanhope M,. 2005. Molecular phylogeny of the genus Saguinus (Platyrrhini, Primates) based on the ND1 mitochondrial gene and implications for conservation. Genet Mol Biol 28: 46-53. (Pubitemid 43084887)
40. Tanabe AS,. 2007. kakusan: a computer program to automate the selection of a nucleotide substitution model and the configuration of a mixed model on multilocus data. Mol Ecol Notes 7: 962-964. (Pubitemid 350059211)
41. Thompson JD, Higgins DG, Gibson TJ,. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673-4680. (Pubitemid 24354800)
42. Xia X, Xie Z,. 2001. DAMBE: data analysis in molecular biology and evolution. J Hered 92: 371-373. (Pubitemid 32848767)