메뉴 건너뛰기




Volumn 6, Issue 10, 2011, Pages

Reproducible cancer biomarker discovery in SELDI-TOF MS using different pre-processing algorithms

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; TUMOR MARKER;

EID: 80054090735     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0026294     Document Type: Article
Times cited : (8)

References (61)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold R, Mann M, (2003) Mass spectrometry-based proteomics. Nature 422: 198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 41649100689 scopus 로고    scopus 로고
    • Mining the plasma proteome for cancer biomarkers
    • Hanash SM, Pitteri SJ, Faca VM, (2008) Mining the plasma proteome for cancer biomarkers. Nature 452: 571-579.
    • (2008) Nature , vol.452 , pp. 571-579
    • Hanash, S.M.1    Pitteri, S.J.2    Faca, V.M.3
  • 3
    • 45549093377 scopus 로고    scopus 로고
    • Differentiating proteomic biomarkers in breast cancer by laser capture microdissection and MALDI MS
    • Sanders ME, Dias EC, Xu BJ, Mobley JA, Billheimer D, et al. (2008) Differentiating proteomic biomarkers in breast cancer by laser capture microdissection and MALDI MS. J Proteome Res 7: 1500-1507.
    • (2008) J Proteome Res , vol.7 , pp. 1500-1507
    • Sanders, M.E.1    Dias, E.C.2    Xu, B.J.3    Mobley, J.A.4    Billheimer, D.5
  • 4
    • 33845607725 scopus 로고    scopus 로고
    • Research progress in SELDI-TOF MS and its clinical applications
    • Cho WC, (2006) Research progress in SELDI-TOF MS and its clinical applications. Sheng Wu Gong Cheng Xue Bao 22: 871-876.
    • (2006) Sheng Wu Gong Cheng Xue Bao , vol.22 , pp. 871-876
    • Cho, W.C.1
  • 5
    • 13444282534 scopus 로고    scopus 로고
    • Outcome signature genes in breast cancer: is there a unique set?
    • Ein-Dor L, Kela I, Getz G, Givol D, Domany E, (2005) Outcome signature genes in breast cancer: is there a unique set? Bioinformatics 21: 171-178.
    • (2005) Bioinformatics , vol.21 , pp. 171-178
    • Ein-Dor, L.1    Kela, I.2    Getz, G.3    Givol, D.4    Domany, E.5
  • 6
    • 51749123784 scopus 로고    scopus 로고
    • Apparently low reproducibility of true differential expression discoveries in microarray studies
    • Zhang M, Yao C, Guo Z, Zou J, Zhang L, et al. (2008) Apparently low reproducibility of true differential expression discoveries in microarray studies. Bioinformatics 24: 2057-2063.
    • (2008) Bioinformatics , vol.24 , pp. 2057-2063
    • Zhang, M.1    Yao, C.2    Guo, Z.3    Zou, J.4    Zhang, L.5
  • 7
    • 45549105194 scopus 로고    scopus 로고
    • Reproducibility of mass spectrometry based protein profiles for diagnosis of breast cancer across clinical studies: a systematic review
    • Callesen AK, Vach W, Jorgensen PE, Cold S, Mogensen O, et al. (2008) Reproducibility of mass spectrometry based protein profiles for diagnosis of breast cancer across clinical studies: a systematic review. J Proteome Res 7: 1395-1402.
    • (2008) J Proteome Res , vol.7 , pp. 1395-1402
    • Callesen, A.K.1    Vach, W.2    Jorgensen, P.E.3    Cold, S.4    Mogensen, O.5
  • 8
    • 1542378202 scopus 로고    scopus 로고
    • Analysis of serum proteomic patterns for early cancer diagnosis: drawing attention to potential problems
    • Diamandis EP, (2004) Analysis of serum proteomic patterns for early cancer diagnosis: drawing attention to potential problems. J Natl Cancer Inst 96: 353-356.
    • (2004) J Natl Cancer Inst , vol.96 , pp. 353-356
    • Diamandis, E.P.1
  • 10
    • 33748031098 scopus 로고    scopus 로고
    • Experimental standards for high-throughput proteomics
    • Hogan JM, Higdon R, Kolker E, (2006) Experimental standards for high-throughput proteomics. OMICS 10: 152-157.
    • (2006) OMICS , vol.10 , pp. 152-157
    • Hogan, J.M.1    Higdon, R.2    Kolker, E.3
  • 11
    • 33846934658 scopus 로고    scopus 로고
    • Opportunities and limitations of SELDI-TOF-MS in biomedical research: practical advices
    • Poon TC, (2007) Opportunities and limitations of SELDI-TOF-MS in biomedical research: practical advices. Expert Rev Proteomics 4: 51-65.
    • (2007) Expert Rev Proteomics , vol.4 , pp. 51-65
    • Poon, T.C.1
  • 12
    • 77955477947 scopus 로고    scopus 로고
    • A review of experimental design best practices for proteomics based biomarker discovery: focus on SELDI-TOF
    • Caffrey RE, (2010) A review of experimental design best practices for proteomics based biomarker discovery: focus on SELDI-TOF. Methods Mol Biol 641: 167-183.
    • (2010) Methods Mol Biol , vol.641 , pp. 167-183
    • Caffrey, R.E.1
  • 13
    • 34548725468 scopus 로고    scopus 로고
    • Proteomics technologies and challenges
    • Cho WC, (2007) Proteomics technologies and challenges. Genomics Proteomics Bioinformatics 5: 77-85.
    • (2007) Genomics Proteomics Bioinformatics , vol.5 , pp. 77-85
    • Cho, W.C.1
  • 14
    • 62649094961 scopus 로고    scopus 로고
    • When one chip is not enough: augmenting the validity of SELDI-TOF proteomic profiles of clinical specimens
    • Kristina G, Radomir P, Eva B, Lenka D, Radek L, et al. (2009) When one chip is not enough: augmenting the validity of SELDI-TOF proteomic profiles of clinical specimens. Lab Chip 9: 1014-1017.
    • (2009) Lab Chip , vol.9 , pp. 1014-1017
    • Kristina, G.1    Radomir, P.2    Eva, B.3    Lenka, D.4    Radek, L.5
  • 15
    • 34147209189 scopus 로고    scopus 로고
    • Preanalytic influence of sample handling on SELDI-TOF serum protein profiles
    • Timms JF, Arslan-Low E, Gentry-Maharaj A, Luo Z, T'Jampens D, et al. (2007) Preanalytic influence of sample handling on SELDI-TOF serum protein profiles. Clin Chem 53: 645-656.
    • (2007) Clin Chem , vol.53 , pp. 645-656
    • Timms, J.F.1    Arslan-Low, E.2    Gentry-Maharaj, A.3    Luo, Z.4    T'Jampens, D.5
  • 16
    • 1842559788 scopus 로고    scopus 로고
    • Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments
    • Baggerly KA, Morris JS, Coombes KR, (2004) Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. Bioinformatics 20: 777-785.
    • (2004) Bioinformatics , vol.20 , pp. 777-785
    • Baggerly, K.A.1    Morris, J.S.2    Coombes, K.R.3
  • 17
    • 52949099571 scopus 로고    scopus 로고
    • Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data
    • Cruz-Marcelo A, Guerra R, Vannucci M, Li Y, Lau CC, et al. (2008) Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data. Bioinformatics 24: 2129-2136.
    • (2008) Bioinformatics , vol.24 , pp. 2129-2136
    • Cruz-Marcelo, A.1    Guerra, R.2    Vannucci, M.3    Li, Y.4    Lau, C.C.5
  • 18
    • 65349138192 scopus 로고    scopus 로고
    • Benchmarking currently available SELDI-TOF MS preprocessing techniques
    • Emanuele VA II, Gurbaxani BM, (2009) Benchmarking currently available SELDI-TOF MS preprocessing techniques. Proteomics 9: 1754-1762.
    • (2009) Proteomics , vol.9 , pp. 1754-1762
    • Emanuele II, V.A.1    Gurbaxani, B.M.2
  • 19
    • 39849093716 scopus 로고    scopus 로고
    • Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data
    • Meuleman W, Engwegen JY, Gast MC, Beijnen JH, Reinders MJ, et al. (2008) Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data. BMC Bioinformatics 9: 88.
    • (2008) BMC Bioinformatics , vol.9 , pp. 88
    • Meuleman, W.1    Engwegen, J.Y.2    Gast, M.C.3    Beijnen, J.H.4    Reinders, M.J.5
  • 20
    • 33748659203 scopus 로고    scopus 로고
    • Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
    • Du P, Kibbe WA, Lin SM, (2006) Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics 22: 2059-2065.
    • (2006) Bioinformatics , vol.22 , pp. 2059-2065
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 22
    • 13844322072 scopus 로고    scopus 로고
    • Lessons from controversy: ovarian cancer screening and serum proteomics
    • Ransohoff DF, (2005) Lessons from controversy: ovarian cancer screening and serum proteomics. J Natl Cancer Inst 97: 315-319.
    • (2005) J Natl Cancer Inst , vol.97 , pp. 315-319
    • Ransohoff, D.F.1
  • 23
    • 49649083648 scopus 로고    scopus 로고
    • The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
    • Shi L, Jones WD, Jensen RV, Harris SC, Perkins RG, et al. (2008) The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. BMC Bioinformatics 9 (Suppl 9): S10.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 9
    • Shi, L.1    Jones, W.D.2    Jensen, R.V.3    Harris, S.C.4    Perkins, R.G.5
  • 24
    • 78649297298 scopus 로고    scopus 로고
    • ProteoMiner and SELDI-TOF-MS: a robust and highly reproducible combination for biomarker discovery from whole blood serum
    • Frobel J, Hartwig S, Passlack W, Eckel J, Haas R, et al. (2010) ProteoMiner and SELDI-TOF-MS: a robust and highly reproducible combination for biomarker discovery from whole blood serum. Arch Physiol Biochem 116: 174-180.
    • (2010) Arch Physiol Biochem , vol.116 , pp. 174-180
    • Frobel, J.1    Hartwig, S.2    Passlack, W.3    Eckel, J.4    Haas, R.5
  • 25
    • 18744372755 scopus 로고    scopus 로고
    • SpecAlign-processing and alignment of mass spectra datasets
    • Wong JW, Cagney G, Cartwright HM, (2005) SpecAlign-processing and alignment of mass spectra datasets. Bioinformatics 21: 2088-2090.
    • (2005) Bioinformatics , vol.21 , pp. 2088-2090
    • Wong, J.W.1    Cagney, G.2    Cartwright, H.M.3
  • 26
    • 33645825183 scopus 로고    scopus 로고
    • Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
    • Ein-Dor L, Zuk O, Domany E, (2006) Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. Proc Natl Acad Sci U S A 103: 5923-5928.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 5923-5928
    • Ein-Dor, L.1    Zuk, O.2    Domany, E.3
  • 27
    • 0037114470 scopus 로고    scopus 로고
    • Power and sample size for DNA microarray studies
    • Lee ML, Whitmore GA, (2002) Power and sample size for DNA microarray studies. Stat Med 21: 3543-3570.
    • (2002) Stat Med , vol.21 , pp. 3543-3570
    • Lee, M.L.1    Whitmore, G.A.2
  • 28
    • 21444454257 scopus 로고    scopus 로고
    • False discovery rate, sensitivity and sample size for microarray studies
    • Pawitan Y, Michiels S, Koscielny S, Gusnanto A, Ploner A, (2005) False discovery rate, sensitivity and sample size for microarray studies. Bioinformatics 21: 3017-3024.
    • (2005) Bioinformatics , vol.21 , pp. 3017-3024
    • Pawitan, Y.1    Michiels, S.2    Koscielny, S.3    Gusnanto, A.4    Ploner, A.5
  • 29
    • 57049093234 scopus 로고    scopus 로고
    • Comparative optimism in models involving both classical clinical and gene expression information
    • Truntzer C, Maucort-Boulch D, Roy P, (2008) Comparative optimism in models involving both classical clinical and gene expression information. BMC Bioinformatics 9: 434.
    • (2008) BMC Bioinformatics , vol.9 , pp. 434
    • Truntzer, C.1    Maucort-Boulch, D.2    Roy, P.3
  • 30
    • 33747595466 scopus 로고    scopus 로고
    • Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies
    • Sun L, Craiu RV, Paterson AD, Bull SB, (2006) Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies. Genet Epidemiol 30: 519-530.
    • (2006) Genet Epidemiol , vol.30 , pp. 519-530
    • Sun, L.1    Craiu, R.V.2    Paterson, A.D.3    Bull, S.B.4
  • 31
    • 0036645099 scopus 로고    scopus 로고
    • Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men
    • Adam BL, Qu Y, Davis JW, Ward MD, Clements MA, et al. (2002) Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men. Cancer Res 62: 3609-3614.
    • (2002) Cancer Res , vol.62 , pp. 3609-3614
    • Adam, B.L.1    Qu, Y.2    Davis, J.W.3    Ward, M.D.4    Clements, M.A.5
  • 32
    • 11144355338 scopus 로고    scopus 로고
    • Pharmacoproteomic analysis of prechemotherapy and postchemotherapy plasma samples from patients receiving neoadjuvant or adjuvant chemotherapy for breast carcinoma
    • Pusztai L, Gregory BW, Baggerly KA, Peng B, Koomen J, et al. (2004) Pharmacoproteomic analysis of prechemotherapy and postchemotherapy plasma samples from patients receiving neoadjuvant or adjuvant chemotherapy for breast carcinoma. Cancer 100: 1814-1822.
    • (2004) Cancer , vol.100 , pp. 1814-1822
    • Pusztai, L.1    Gregory, B.W.2    Baggerly, K.A.3    Peng, B.4    Koomen, J.5
  • 34
    • 0142008803 scopus 로고    scopus 로고
    • A data-analytic strategy for protein biomarker discovery: profiling of high-dimensional proteomic data for cancer detection
    • Yasui Y, Pepe M, Thompson ML, Adam BL, Wright GL Jr, et al. (2003) A data-analytic strategy for protein biomarker discovery: profiling of high-dimensional proteomic data for cancer detection. Biostatistics 4: 449-463.
    • (2003) Biostatistics , vol.4 , pp. 449-463
    • Yasui, Y.1    Pepe, M.2    Thompson, M.L.3    Adam, B.L.4    Wright Jr., G.L.5
  • 35
    • 28544442576 scopus 로고    scopus 로고
    • Identification of biomarkers for breast cancer in nipple aspiration and ductal lavage fluid
    • Li J, Zhao J, Yu X, Lange J, Kuerer H, et al. (2005) Identification of biomarkers for breast cancer in nipple aspiration and ductal lavage fluid. Clin Cancer Res 11: 8312-8320.
    • (2005) Clin Cancer Res , vol.11 , pp. 8312-8320
    • Li, J.1    Zhao, J.2    Yu, X.3    Lange, J.4    Kuerer, H.5
  • 38
    • 67649205714 scopus 로고    scopus 로고
    • Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes
    • Zhang M, Zhang L, Zou J, Yao C, Xiao H, et al. (2009) Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes. Bioinformatics.
    • (2009) Bioinformatics
    • Zhang, M.1    Zhang, L.2    Zou, J.3    Yao, C.4    Xiao, H.5
  • 39
    • 70350451926 scopus 로고    scopus 로고
    • A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
    • Carvajal-Rodriguez A, de Una-Alvarez J, Rolan-Alvarez E, (2009) A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests. BMC Bioinformatics 10: 209.
    • (2009) BMC Bioinformatics , vol.10 , pp. 209
    • Carvajal-Rodriguez, A.1    de Una-Alvarez, J.2    Rolan-Alvarez, E.3
  • 41
    • 0001457509 scopus 로고
    • Some methods for classification and analysis of multivariate observations. Fifth Berkeley Symposium on Mathematical Statistics and Probability
    • Berkeley, University of California Press
    • MacQueen J, (1967) Some methods for classification and analysis of multivariate observations. Fifth Berkeley Symposium on Mathematical Statistics and Probability. Statistical Laboratory of the University of California Berkeley University of California Press pp. 281-297.
    • (1967) Statistical Laboratory of the University of California , pp. 281-297
    • MacQueen, J.1
  • 42
    • 0023453329 scopus 로고
    • Silhouettes: a graphical aid to the interpretation and validation of cluster analysis
    • Rousseeuw PJ, (1987) Silhouettes: a graphical aid to the interpretation and validation of cluster analysis. J Comput Appl Math 20: 53-65.
    • (1987) J Comput Appl Math , vol.20 , pp. 53-65
    • Rousseeuw, P.J.1
  • 43
    • 67349196123 scopus 로고    scopus 로고
    • A HUPO test sample study reveals common problems in mass spectrometry-based proteomics
    • Bell AW, Deutsch EW, Au CE, Kearney RE, Beavis R, et al. (2009) A HUPO test sample study reveals common problems in mass spectrometry-based proteomics. Nat Methods 6: 423-430.
    • (2009) Nat Methods , vol.6 , pp. 423-430
    • Bell, A.W.1    Deutsch, E.W.2    Au, C.E.3    Kearney, R.E.4    Beavis, R.5
  • 44
    • 67449092269 scopus 로고    scopus 로고
    • Clinical quantitation of prostate-specific antigen biomarker in the low nanogram/milliliter range by conventional bore liquid chromatography-tandem mass spectrometry (multiple reaction monitoring) coupling and correlation with ELISA tests
    • Fortin T, Salvador A, Charrier JP, Lenz C, Lacoux X, et al. (2009) Clinical quantitation of prostate-specific antigen biomarker in the low nanogram/milliliter range by conventional bore liquid chromatography-tandem mass spectrometry (multiple reaction monitoring) coupling and correlation with ELISA tests. Mol Cell Proteomics 8: 1006-1015.
    • (2009) Mol Cell Proteomics , vol.8 , pp. 1006-1015
    • Fortin, T.1    Salvador, A.2    Charrier, J.P.3    Lenz, C.4    Lacoux, X.5
  • 45
    • 33644528230 scopus 로고    scopus 로고
    • Clinical utility of serum HER2/neu in monitoring and prediction of progression-free survival in metastatic breast cancer patients treated with trastuzumab-based therapies
    • Esteva FJ, Cheli CD, Fritsche H, Fornier M, Slamon D, et al. (2005) Clinical utility of serum HER2/neu in monitoring and prediction of progression-free survival in metastatic breast cancer patients treated with trastuzumab-based therapies. Breast Cancer Res 7: R436-443.
    • (2005) Breast Cancer Res , vol.7 , pp. 436-443
    • Esteva, F.J.1    Cheli, C.D.2    Fritsche, H.3    Fornier, M.4    Slamon, D.5
  • 46
    • 77953246142 scopus 로고    scopus 로고
    • Single-molecule enzyme-linked immunosorbent assay detects serum proteins at subfemtomolar concentrations
    • Rissin DM, Kan CW, Campbell TG, Howes SC, Fournier DR, et al. (2010) Single-molecule enzyme-linked immunosorbent assay detects serum proteins at subfemtomolar concentrations. Nat Biotechnol 28: 595-599.
    • (2010) Nat Biotechnol , vol.28 , pp. 595-599
    • Rissin, D.M.1    Kan, C.W.2    Campbell, T.G.3    Howes, S.C.4    Fournier, D.R.5
  • 47
    • 70449353726 scopus 로고    scopus 로고
    • The proteomic analysis of human neonatal umbilical cord serum by mass spectrometry
    • Song HJ, Zhang P, Guo XJ, Liao LM, Zhou ZM, et al. (2009) The proteomic analysis of human neonatal umbilical cord serum by mass spectrometry. Acta Pharmacol Sin 30: 1550-1558.
    • (2009) Acta Pharmacol Sin , vol.30 , pp. 1550-1558
    • Song, H.J.1    Zhang, P.2    Guo, X.J.3    Liao, L.M.4    Zhou, Z.M.5
  • 48
    • 68549087355 scopus 로고    scopus 로고
    • Optimal analysis of complex protein mass spectra
    • Dijkstra M, Jansen RC, (2009) Optimal analysis of complex protein mass spectra. Proteomics 9: 3869-3876.
    • (2009) Proteomics , vol.9 , pp. 3869-3876
    • Dijkstra, M.1    Jansen, R.C.2
  • 49
    • 38049000719 scopus 로고    scopus 로고
    • The multiplicity problem in linkage analysis of gene expression data - the power of differentiating cis- and trans-acting regulators
    • Huang B, Rangrej J, Paterson AD, Sun L, (2007) The multiplicity problem in linkage analysis of gene expression data- the power of differentiating cis- and trans-acting regulators. BMC Proc 1 (Suppl 1): S142.
    • (2007) BMC Proc , vol.1 , Issue.SUPPL. 1
    • Huang, B.1    Rangrej, J.2    Paterson, A.D.3    Sun, L.4
  • 50
    • 37149012278 scopus 로고    scopus 로고
    • Prioritized subset analysis: improving power in genome-wide association studies
    • Li C, Li M, Lange EM, Watanabe RM, (2008) Prioritized subset analysis: improving power in genome-wide association studies. Hum Hered 65: 129-141.
    • (2008) Hum Hered , vol.65 , pp. 129-141
    • Li, C.1    Li, M.2    Lange, E.M.3    Watanabe, R.M.4
  • 51
    • 79952646862 scopus 로고    scopus 로고
    • Finding co-mutated genes and candidate cancer genes in cancer genomes by stratified false discovery rate control
    • Wang J, Zhang Y, Shen X, Zhu J, Zhang L, et al. (2011) Finding co-mutated genes and candidate cancer genes in cancer genomes by stratified false discovery rate control. Mol Biosyst 7: 1158-1166.
    • (2011) Mol Biosyst , vol.7 , pp. 1158-1166
    • Wang, J.1    Zhang, Y.2    Shen, X.3    Zhu, J.4    Zhang, L.5
  • 54
    • 60849109966 scopus 로고    scopus 로고
    • Standard operating procedures for serum and plasma collection: early detection research network consensus statement standard operating procedure integration working group
    • Tuck MK, Chan DW, Chia D, Godwin AK, Grizzle WE, et al. (2009) Standard operating procedures for serum and plasma collection: early detection research network consensus statement standard operating procedure integration working group. J Proteome Res 8: 113-117.
    • (2009) J Proteome Res , vol.8 , pp. 113-117
    • Tuck, M.K.1    Chan, D.W.2    Chia, D.3    Godwin, A.K.4    Grizzle, W.E.5
  • 55
    • 71049137289 scopus 로고    scopus 로고
    • Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma
    • Kuzyk MA, Smith D, Yang J, Cross TJ, Jackson AM, et al. (2009) Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Mol Cell Proteomics 8: 1860-1877.
    • (2009) Mol Cell Proteomics , vol.8 , pp. 1860-1877
    • Kuzyk, M.A.1    Smith, D.2    Yang, J.3    Cross, T.J.4    Jackson, A.M.5
  • 56
    • 50549094991 scopus 로고    scopus 로고
    • Advances in quantitative hepcidin measurements by time-of-flight mass spectrometry
    • Swinkels DW, Girelli D, Laarakkers C, Kroot J, Campostrini N, et al. (2008) Advances in quantitative hepcidin measurements by time-of-flight mass spectrometry. PLoS One 3: e2706.
    • (2008) PLoS One , vol.3
    • Swinkels, D.W.1    Girelli, D.2    Laarakkers, C.3    Kroot, J.4    Campostrini, N.5
  • 57
    • 62549163396 scopus 로고    scopus 로고
    • Papers on normalization, variable selection, classification or clustering of microarray data
    • Rocke DM, Ideker T, Troyanskaya O, Quackenbush J, Dopazo J, (2009) Papers on normalization, variable selection, classification or clustering of microarray data. Bioinformatics 25: 701-702.
    • (2009) Bioinformatics , vol.25 , pp. 701-702
    • Rocke, D.M.1    Ideker, T.2    Troyanskaya, O.3    Quackenbush, J.4    Dopazo, J.5
  • 58
    • 33646358230 scopus 로고    scopus 로고
    • A new type of stochastic dependence revealed in gene expression data
    • Klebanov L, Jordan C, Yakovlev A, (2006) A new type of stochastic dependence revealed in gene expression data. Stat Appl Genet Mol Biol 5: Article7.
    • (2006) Stat Appl Genet Mol Biol , vol.5
    • Klebanov, L.1    Jordan, C.2    Yakovlev, A.3
  • 59
    • 25444485444 scopus 로고    scopus 로고
    • The effects of normalization on the correlation structure of microarray data
    • Qiu X, Brooks AI, Klebanov L, Yakovlev N, (2005) The effects of normalization on the correlation structure of microarray data. BMC Bioinformatics 6: 120.
    • (2005) BMC Bioinformatics , vol.6 , pp. 120
    • Qiu, X.1    Brooks, A.I.2    Klebanov, L.3    Yakovlev, N.4
  • 60
    • 77949532152 scopus 로고    scopus 로고
    • Extracting consistent knowledge from highly inconsistent cancer gene data sources
    • Gong X, Wu R, Zhang Y, Zhao W, Cheng L, et al. (2010) Extracting consistent knowledge from highly inconsistent cancer gene data sources. BMC Bioinformatics 11: 76.
    • (2010) BMC Bioinformatics , vol.11 , pp. 76
    • Gong, X.1    Wu, R.2    Zhang, Y.3    Zhao, W.4    Cheng, L.5
  • 61
    • 61349182486 scopus 로고    scopus 로고
    • Recent developments in public proteomic MS repositories and pipelines
    • Mead JA, Bianco L, Bessant C, (2009) Recent developments in public proteomic MS repositories and pipelines. Proteomics 9: 861-881.
    • (2009) Proteomics , vol.9 , pp. 861-881
    • Mead, J.A.1    Bianco, L.2    Bessant, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.