Fluorescence protection assay: A novel homogeneous assay platform toward development of aptamer sensors for protein detection

Nucleic Acids Research

Volumn 39, Issue 18, 2011, Pages

  Wang, Hong Qi ^a   Wu, Zhan ^a   Tang, Li Juan ^a   Yu, Ru Qin ^a   Jiang, Jian Hui ^a  

^a HUNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; FLUORESCEIN ISOTHIOCYANATE; FLUORESCEIN ISOTHIOCYANATE ANTIBODY; IMMUNOGLOBULIN E; MONOCLONAL ANTIBODY; PROTEIN; UNCLASSIFIED DRUG;

ALLERGIC DISEASE; ANTIBODY LABELING; ARTICLE; ATOPY; BIOSENSOR; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; FLUORESCENCE ANALYSIS; FLUORESCENCE PROTECTION ASSAY; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DETERMINATION; PROTEIN PROTEIN INTERACTION; PROTEIN TARGETING;

APTAMERS, NUCLEOTIDE; BIOSENSING TECHNIQUES; FLUORESCENT DYES; FLUOROMETRY; IMMUNOGLOBULIN E; PROTEINS;

EID: 80054085670     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr559     Document Type: Article

References (38)

1. Chen, Z., Tabakman, S.M., Goodwin, A.P., Kattah, M.G., Daranciang, D., Wang, X.R., Zhang, G.Y., Li, X.L., Liu, Z., Utz, P.J. et al. (2008) Protein microarrays with carbon nanotubes as multicolor raman labels. Nat. Biotechnol., 26, 1285-1292.
2. Gao, L.Z., Zhuang, J., Nie, L., Zhang, J.B., Zhang, Y., Gu, N., Wang, T.H., Feng, J., Yang, D.L., Perrett, S. et al. (2007) Intrinsic peroxidase-like activity of ferromagnetic nanoparticles. Nat. Nanotechnol., 2, 577-583. (Pubitemid 47367542)
3. Liu, G.D., Lin, Y.Y., Wang, J., Wu, H., Wai, C.M. and Lin, Y.H. (2007) Disposable electrochemical immunosensor diagnosis device based on nanoparticle probe and immunochromatographic strip. Anal. Chem., 79, 7644-7653. (Pubitemid 47622391)
4. Shaikh, N.A., Ge, J., Zhao, Y.X., Walker, P. and Drebot, M. (2007) Development of a novel, rapid, and sensitive immunochromatographic strip assay specific for West Nile Virus (WNV) IgM and testing of its diagnostic accuracy in patients suspected of WNV infection. Clin. Chem., 53, 2031-2034. (Pubitemid 350036065)
5. Borisov, S.M. and Wolfbeis, O.S. (2008) Optical biosensors. Chem. Rev., 108, 423-461. (Pubitemid 351344446)
6. Backmann, N., Zahnd, C., Huber, F., Bietsch, A., Pluckthun, A., Lang, H.P., Guntherodt, H.J., Hegner, M. and Gerber, C. (2005) A label-free immunosensor array using single-chain antibody fragments. Proc. Natl Acad. Sci. USA, 102, 14587-14592. (Pubitemid 41457101)
7. Bachovchin, D.A., Brown, S.J., Rosen, H. and Cravatt, B.F. (2009) Identification of selective inhibitors of uncharacterized enzymes by high-throughput screening with fluorescent activity-based probes. Nat. Biotechnol., 27, 387-394.
8. Medintz, I.L., Clapp, A.R., Mattoussi, H., Goldman, E.R., Fisher, B. and Mauro, J.M. (2003) Self-assembled nanoscale biosensors based on quantum dot FRET donors. Nat. Mater., 2, 630-638.
9. Goldman, E.R., Medintz, I.L., Whitley, J.L., Hayhurst, A., Clapp, A.R., Tetsuo Uyeda, H., Deschamps, J.R., Lassman, M.E. and Mattoussi, H. (2005) A hybrid quantum dot-antibody fragment fluorescence resonance energy transfer-based TNT sensor. J. Am. Chem. Soc., 127, 6744-6751. (Pubitemid 40664182)
10. Huang, J. and Schreiber, S.L. (1997) A yeast genetic system for selecting small molecule inhibitors of protein-protein interactions in nanodroplets. Proc. Natl Acad. Sci. USA, 94, 13396-13401. (Pubitemid 28009592)
11. Ellington, A.D. and Szostak, J.W. (1990) In vitro selection of RNA molecules that bind specific ligands. Nature, 346, 818-822.
12. Tuerk, C. and Gold, L. (1990) Systematic evolution of ligands by exponential enrichment: rna ligands to bacteriophage t4 dna polymerase. Science, 249, 505-510.
13. Mukhopadhyay, R. (2005) Aptamers are ready for the spotlight. Anal. Chem., 77, 115A-118A.
14. Zhang, Y.L., Huang, Y., Jiang, J.H., Shen, G.L. and Yu, R.Q. (2007) Electrochemical aptasensor based on proximity-dependent surface hybridization assay for single-step, reusable, sensitive protein detection. J. Am. Chem. Soc., 129, 15448-15449.
15. Cho, E.J., Lee, J.W. and Ellington, A.D. (2009) Applications of aptamers as sensors. Annu. Rev. Anal. Chem., 2, 241-264.
16. Yang, C.J., Jockusch, S., Vicens, M., Turro, N.J. and Tan, W. (2005) Light-switching excimer probes for rapid protein monitoring in complex biological fluids. Proc. Natl Acad. Sci. USA, 102, 17278-17283. (Pubitemid 41740857)
17. Xia, F., Zuo, X., Yang, R., Xiao, Y., Kang, D., Vallée-Bé lisle, A., Gong, X., Heeger, A.J. and Plaxco, K.W. (2010) On the binding of cationic, water-soluble conjugated polymers to DNA: electrostatic and hydrophobic interactions. J. Am. Chem. Soc., 132, 1252-1254.
18. Nutiu, R. and Li, Y. (2003) Structure-switching signaling aptamers. J. Am. Chem. Soc., 125, 4771-4778. (Pubitemid 36505368)
19. Li, D., Shlyahovsky, B., Elbaz, J. and Willner, I. (2007) Amplified analysis of low-molecular-weight substrates or proteins by the self-assembly of DNAzyme-aptamer conjugates. J. Am. Chem. Soc., 129, 5804-5805. (Pubitemid 46748470)
20. Stojanovic, M.N., Prada, P.D. and Landry, D.W. (2000) Fluorescent sensors based on aptamer self-assembly. J. Am. Chem. Soc., 122, 11547-11548.
21. Zuo, X., Xiao, Y. and Plaxco, K.W. (2009) High specificity, electrochemical sandwich assays based on single aptamer sequences and suitable for the direct detection of small-molecule targets in blood and other complex matrices. J. Am. Chem. Soc., 131, 6944-6945.
22. Giusto, D.A.D., Wlassoff, W.A., Gooding, J.J., Messerle, B.A. and King, G.C. (2005) Proximity extension of circular DNA aptamers with real-time protein detection. Nucleic Acids Res., 33, e64.
23. Fredriksson, S., Gullberg, M., Jarvius, J., Olsson, C., Pietras, K., Gú stafsdó ttir, S.M., Östman, A. and Landegren, U. (2002) Protein detection using proximity-dependent DNA ligation assays. Nat. Biotechnol., 20, 473-477. (Pubitemid 34495933)
24. Shlyahovsky, B., Li, D., Weizmann, Y., Nowarski, R., Kotler, M. and Willner, I. (2007) Spotlighting of cocaine by an autonomous aptamer-based machine. J. Am. Chem. Soc., 129, 3814-3815. (Pubitemid 46595489)
25. Qiu, L.P., Wu, Z.S., Shen, G.L. and Yu, R.Q. (2011) Highly sensitive and selective bifunctional oligonucleotide probe for homogeneous parallel fluorescence detection of protein and nucleotide sequence. Anal. Chem., 83, 3050-3057.
26. Zhou, L., Ou, L.J., Chu, X., Shen, G.L. and Yu, R.Q. (2007) Aptamer-based rolling circle amplification: a platform for electrochemical detection of protein. Anal. Chem., 79, 7492-7500. (Pubitemid 47606117)
27. Yang, L., Fung, C.W., Cho, E.J. and Ellington, A.D. (2007) Real-time rolling circle amplification for protein detection. Anal. Chem., 79, 3320-3329. (Pubitemid 46717163)
28. Sutton, B.J. and Gould, H.J. (1993) The human IgE network. Nature, 366, 421-428. (Pubitemid 24013874)
29. Watt, R.M. and Voss, E.W. Jr (1977) Mechanism of quenching of fluorescein by anti-fluorescein IgG antibodies. Immunochemistry, 14, 533-541. (Pubitemid 8164270)
30. 2+. J. Am. Chem. Soc., 118, 3192-3201. (Pubitemid 26135509)
31. Zuk, R.F., Rowley, G.L. and Ullman, E.F. (1979) Fluorescence protection immunoassay:a new homogeneous assay technique. Clin. Chem., 25, 1554-1560. (Pubitemid 10240929)
32. Wu, Z.S., Lu, H., Liu, X., Hu, R., Zhou, H., Shen, G. and Yu, R.Q. (2010) Inhibitory effect of target binding on hairpin aptamer sticky-end pairing-induced gold nanoparticle assembly for light-up colorimetric protein assay. Anal. Chem., 82, 3890-3898.
33. Jiang, Y., Fang, X. and Bai, C. (2004) Signaling aptamer/protein binding by a molecular light switch complex. Anal. Chem., 76, 5230-5235. (Pubitemid 39180356)
34. German, I., Buchanan, D.D. and Kennedy, R.T. (1998) Aptamers as ligands in affinity probe capillary electrophoresis. Anal. Chem., 70, 4540-4545.
35. Wu, Z., Zhen, Z., Jiang, J.H., Shen, G.L. and Yu, R.Q. (2009) Terminal protection of small-molecule-linked DNA for sensitive electrochemical detection of protein binding via selective carbon nanotube assembly. J. Am. Chem. Soc., 131, 12325-12332.
36. Gould, H.J., Sutton, B.J., Beavil, A.J., Beavil, R.L., McCloskey, N., Coker, H.A., Fear, D. and Smurthwaite, L. (2003) The biology of IgE and the basis of allergic disease. Annu. Rev. Immunol., 21, 579-628. (Pubitemid 37174542)
37. Liss, M., Petersen, B., Wolf, H. and Prohaska, E. (2002) An aptamer-based quartz crystal protein biosensor. Anal. Chem., 74, 4488-4495. (Pubitemid 35006438)
38. Gokulrangan, G., Unruh, J.R., Holub, D.F., Ingram, B., Johnson, C.K. and Wilson, G.S. (2005) DNA Aptamer-based bioanalysis of IgE by fluorescence anisotropy. Anal. Chem., 77, 1963-1970. (Pubitemid 40463809)