Molecular evolution of the H6 subtype influenza a viruses from poultry in eastern China from 2002 to 2010

Virology Journal

Volumn 8, Issue , 2011, Pages

  Zhao, Guo ^a   Lu, Xinlun ^a   Gu, Xiaobing ^a   Zhao, Kunkun ^a   Song, Qingqing ^a   Pan, Jinjin ^a   Xu, Quangang ^a   Duan, Zhiqiang ^a   Peng, Daxin ^a   Hu, Shunlin ^a   Wang, Xiaoquan ^a   Liu, Xiufan ^a  

^a YANGZHOU UNIVERSITY   (China)

Author keywords

H6 influenza viruses; molecular evolution; phylogenetic analysis; poultry

Indexed keywords

HEMAGGLUTININ; VIRUS RNA;

ANTIGENICITY; ARTICLE; CHICKEN; CHINA; DOMESTIC ANIMAL; DUCK; GENE POOL; GENETIC REASSORTMENT; GENETIC VARIABILITY; GOOSE; INFLUENZA VIRUS A; INFLUENZA VIRUS A H6; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; POULTRY; VIRUS ISOLATION; ANIMAL; AVIAN INFLUENZA; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; PREVALENCE; VIROLOGY;

ANAS PLATYRHYNCHOS; AVES; INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE;

ANIMALS; CHINA; CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; GENOTYPE; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POULTRY; PREVALENCE; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

EID: 80053970947     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-8-470     Document Type: Article

References (24)

1. Molecular evolution of H6 influenza viruses from poultry in Southeastern China: prevalence of H6N1 influenza viruses possessing seven A/Hong Kong/156/97 (H5N1)-like genes in poultry. Chin PS, Hoffmann E, Webby R, Webster RG, Guan Y, Peiris M, Shortridge KF, J Virol 2002 76 507 516 10.1128/JVI.76.2.507-516.2002 11752141 (Pubitemid 34033349)
2. Characterization of the influenza A virus gene pool in avian species in southern China: was H6N1 a derivative or a precursor of H5N1? Hoffmann E, Stech J, Leneva I, Krauss S, Scholtissek C, Chin PS, Peiris M, Shortridge KF, Webster RG, J Virol 2000 74 6309 6315 10.1128/JVI.74.14.6309-6315.2000 10864640 (Pubitemid 30429795)
3. Avian-to-human transmission of H9N2 subtype influenza A viruses: relationship between H9N2 and H5N1 human isolates. Lin YP, Shaw M, Gregory V, Cameron K, Lim W, Klimov A, Subbarao K, Guan Y, Krauss S, Shortridge K, Webster R, Cox N, Hay A, Proc Natl Acad Sci USA 2000 97 9654 9658 10920197 (Pubitemid 30650831)
4. Human infection with influenza H9N2. Peiris M, Yuen KY, Leung CW, Chan KH, Ip PL, Lai RW, Orr WK, Shortridge KF, Lancet 1999 354 916 917 10.1016/S0140-6736(99)03311-5 10489954 (Pubitemid 29424025)
5. The nucleoprotein as a possible major factor in determining host specificity of influenza H3N2 viruses. Scholtissek C, Burger H, Kistner O, Shortridge KF, Virology 1985 147 287 294 10.1016/0042-6822(85)90131-X 2416114 (Pubitemid 16172175)
6. Genetic and pathogenic characterization of H6N1 avian influenza viruses isolated in Taiwan between 1972 and 2005. Lee MS, Chang PC, Shien JH, Cheng MC, Chen CL, Shieh HK, Avian Dis 2006 50 561 571 10.1637/7640-050106R.1 17274295 (Pubitemid 46127333)
7. Establishment of an H6N2 influenza virus lineage in domestic ducks in southern China. Huang K, Bahl J, Fan XH, Vijaykrishna D, Cheung CL, Webby RJ, Webster RG, Chen H, Smith GJ, Peiris JS, Guan Y, J Virol 2010 84 6978 6986 10.1128/JVI.00256-10 20463062
8. Establishment of influenza A virus (H6N1) in minor poultry species in southern China. Cheung CL, Vijaykrishna D, Smith GJ, Fan XH, Zhang JX, Bahl J, Duan L, Huang K, Tai H, Wang J, Poon LL, Peiris JS, Chen H, Guan Y, J Virol 2007 81 10402 10412 10.1128/JVI.01157-07 17652385 (Pubitemid 47463314)
9. Reassortment and interspecies transmission of North American H6N2 influenza viruses. Webby RJ, Woolcock PR, Krauss SL, Webster RG, Virology 2002 295 44 53 10.1006/viro.2001.1341 12033764
10. Novel Reassortant Highly Pathogenic Avian Influenza (H5N5) Viruses in Domestic Ducks, China. Gu M, Liu W, Cao Y, Peng D, Wang X, Wan H, Zhao G, Xu Q, Zhang W, Song Q, Li Y, Liu X, Emerg Infect Dis 2011 17 1060 1063 10.3201/eid1706.101406 21749770
11. Influenza virus hemagglutinin with multibasic cleavage site is activated by furin, a subtilisin-like endoprotease. Stieneke-Grober A, Vey M, Angliker H, Shaw E, Thomas G, Roberts C, Klenk HD, Garten W, EMBO J 1992 11 2407 2414 1628614
12. X-ray structures of H5 avian and H9 swine influenza virus hemagglutinins bound to avian and human receptor analogs. Ha Y, Stevens DJ, Skehel JJ, Wiley DC, Proc Natl Acad Sci USA 2001 98 11181 11186 10.1073/pnas.201401198 11562490 (Pubitemid 32928703)
13. How to overcome resistance of influenza A viruses against adamantane derivatives. Scholtissek C, Quack G, Klenk HD, Webster RG, Antiviral Res 1998 37 83 95 10.1016/S0166-3542(97)00061-2 9588841 (Pubitemid 28186299)
14. Emergence of amantadine-resistant influenza A viruses: epidemiological study. Suzuki H, Saito R, Masuda H, Oshitani H, Sato M, Sato I, J Infect Chemother 2003 9 195 200 10.1007/s10156-003-0262-6 14513385 (Pubitemid 37288281)
15. Molecular correlates of influenza A H5N1 virus pathogenesis in mice. Katz JM, Lu X, Tumpey TM, Smith CB, Shaw MW, Subbarao K, J Virol 2000 74 10807 10810 10.1128/JVI.74.22.10807-10810.2000 11044127
16. Residue 627 of PB2 is a determinant of cold sensitivity in RNA replication of avian influenza viruses. Massin P, van der Werf S, Naffakh N, J Virol 2001 75 5398 5404 10.1128/JVI.75.11.5398-5404.2001 11333924 (Pubitemid 32448565)
17. Molecular basis of replication of duck H5N1 influenza viruses in a mammalian mouse model. Li Z, Chen H, Jiao P, Deng G, Tian G, Li Y, Hoffmann E, Webster RG, Matsuoka Y, Yu K, J Virol 2005 79 12058 12064 10.1128/JVI.79.18. 12058-12064.2005 16140781 (Pubitemid 41279322)
18. Molecular characterization of highly pathogenic H5N1 avian influenza A viruses isolated from raccoon dogs in China. Qi X, Li X, Rider P, Fan W, Gu H, Xu L, Yang Y, Lu S, Wang H, Liu F, PLoS One 2009 4 4682 10.1371/journal.pone. 0004682 19270752
19. Phylogenetic analyses of type A influenza genes in natural reservoir species in North America reveals genetic variation. Spackman E, Stallknecht DE, Slemons RD, Winker K, Suarez DL, Scott M, Swayne DE, Virus Res 2005 114 89 100 10.1016/j.virusres.2005.05.013 16039745 (Pubitemid 41586601)
20. Gene flow and competitive exclusion of avian influenza A virus in natural reservoir hosts. Bahl J, Vijaykrishna D, Holmes EC, Smith GJ, Guan Y, Virology 2009 390 289 297 10.1016/j.virol.2009.05.002 19501380
21. The evolutionary genetics and emergence of avian influenza viruses in wild birds. Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, Nolting J, Swayne DE, Runstadler JA, Happ GM, Senne DA, Wang R, Slemons RD, Holmes EC, Taubenberger JK, PLoS Pathog 2008 4 1000076 10.1371/journal.ppat. 1000076 18516303 (Pubitemid 351811513)
22. Identification and subtyping of avian influenza viruses by reverse transcription-PCR. Lee MS, Chang PC, Shien JH, Cheng MC, Shieh HK, J Virol Methods 2001 97 13 22 10.1016/S0166-0934(01)00301-9 11483213 (Pubitemid 32718737)
23. A reverse transcription-PCR for subtyping of the neuraminidase of avian influenza viruses. Qiu BF, Liu WJ, Peng DX, Hu SL, Tang YH, Liu XF, J Virol Methods 2009 155 193 198 10.1016/j.jviromet.2008.10.001 18984006
24. Universal primer set for the full-length amplification of all influenza A viruses. Hoffmann E, Stech J, Guan Y, Webster RG, Perez DR, Arch Virol 2001 146 2275 2289 10.1007/s007050170002 11811679 (Pubitemid 34682391)