메뉴 건너뛰기




Volumn 412, Issue 48, 2011, Pages 6634-6652

Comparing and aggregating partially resolved trees

Author keywords

Aggregation; Computational biology; Consensus; Hausdorff distance; Phylogenetic trees; Quartet distance; Triplet distance

Indexed keywords

COMPUTATIONAL BIOLOGY; CONSENSUS; HAUSDORFF DISTANCE; PHYLOGENETIC TREES; QUARTET DISTANCE; TRIPLET DISTANCE;

EID: 80053938817     PISSN: 03043975     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tcs.2011.08.027     Document Type: Article
Times cited : (35)

References (50)
  • 1
    • 0000090670 scopus 로고
    • N-trees as nestings: Complexity, similarity, and consensus
    • E.N. Adams III. N-trees as nestings: complexity, similarity, and consensus Journal of Classification 3 2 1986 299 317
    • (1986) Journal of Classification , vol.3 , Issue.2 , pp. 299-317
    • Adams III, E.N.1
  • 2
    • 34848818026 scopus 로고    scopus 로고
    • Aggregating inconsistent information: Ranking and clustering
    • DOI 10.1145/1060590.1060692, STOC'05: Proceedings of the 37th Annual ACM Symposium on Theory of Computing
    • N. Ailon, M. Charikar, and A. Newman Aggregating inconsistent information: ranking and clustering STOC '05: Proceedings of the thirty-seventh annual ACM symposium on Theory of Computing 2005 ACM Press New York, NY, USA 684 693 (Pubitemid 43098641)
    • (2005) Proceedings of the Annual ACM Symposium on Theory of Computing , pp. 684-693
    • Ailon, N.1    Charikar, M.2    Newman, A.3
  • 3
    • 0347512294 scopus 로고    scopus 로고
    • Subtree transfer operations and their induced metrics on evolutionary trees
    • B. Allen, and M. Steel Subtree transfer operations and their induced metrics on evolutionary trees Annals of Combinatorics 5 2001 1 13
    • (2001) Annals of Combinatorics , vol.5 , pp. 1-13
    • Allen, B.1    Steel, M.2
  • 6
    • 0012257673 scopus 로고
    • Voting schemes for which it can be difficult to tell who won the election
    • J.J. Bartholdi, C.A. Tovey, and M.A. Trick Voting schemes for which it can be difficult to tell who won the election Social Choice and Welfare 6 1989
    • (1989) Social Choice and Welfare , vol.6
    • Bartholdi, J.J.1    Tovey, C.A.2    Trick, M.A.3
  • 9
    • 39049179285 scopus 로고    scopus 로고
    • Multipolar consensus for phylogenetic trees
    • C. Bonnard, V. Berry, and N. Lartillot Multipolar consensus for phylogenetic trees Systematic Biololgy 55 5 2006 837 843
    • (2006) Systematic Biololgy , vol.55 , Issue.5 , pp. 837-843
    • Bonnard, C.1    Berry, V.2    Lartillot, N.3
  • 10
    • 15244342170 scopus 로고    scopus 로고
    • Computing the quartet distance in time O (n log n)
    • G.S. Brodal, R. Fagerberg, and C.N.S. Pedersen Computing the quartet distance in time O (n log n) Algorithmica 38 2 2003 377 395
    • (2003) Algorithmica , vol.38 , Issue.2 , pp. 377-395
    • Brodal, G.S.1    Fagerberg, R.2    Pedersen, C.N.S.3
  • 12
    • 1642519173 scopus 로고    scopus 로고
    • A classification of consensus methods for phylogenetics
    • M. Janowitz, F.-J. Lapointe, F. McMorris, B.B. Mirkin, F. Roberts, Discrete Mathematics and Theoretical Computer Science American Mathematical Society Providence, RI
    • D. Bryant A classification of consensus methods for phylogenetics M. Janowitz, F.-J. Lapointe, F. McMorris, B.B. Mirkin, F. Roberts, Bioconsensus Discrete Mathematics and Theoretical Computer Science vol.~61 2003 American Mathematical Society Providence, RI 163 185
    • (2003) Bioconsensus , vol.61 , pp. 163-185
    • Bryant, D.1
  • 13
    • 77951296610 scopus 로고    scopus 로고
    • New results on optimizing rooted triplets consistency
    • J. Byrka, S. Guillemot, and J. Jansson New results on optimizing rooted triplets consistency Discrete Applied Mathematics 158 11 2010 1136 1147
    • (2010) Discrete Applied Mathematics , vol.158 , Issue.11 , pp. 1136-1147
    • Byrka, J.1    Guillemot, S.2    Jansson, J.3
  • 15
    • 33745007116 scopus 로고    scopus 로고
    • Discriminating supported and unsupported relationships in supertrees using triplets
    • J.A. Cotton, C.S. Slater, and M. Wilkinson Discriminating supported and unsupported relationships in supertrees using triplets Systematic Biology 55 2 2006 345 350
    • (2006) Systematic Biology , vol.55 , Issue.2 , pp. 345-350
    • Cotton, J.A.1    Slater, C.S.2    Wilkinson, M.3
  • 16
    • 41349115911 scopus 로고    scopus 로고
    • Quantifying the potential utility of phylogenetic characters
    • J.A. Cotton, and M. Wilkinson Quantifying the potential utility of phylogenetic characters Taxon 57 1 2008 1 6
    • (2008) Taxon , vol.57 , Issue.1 , pp. 1-6
    • Cotton, J.A.1    Wilkinson, M.2
  • 18
    • 0030311519 scopus 로고    scopus 로고
    • The triples distance for rooted bifurcating phylogenetic trees
    • D.E. Critchlow, D.K. Pearl, and C. Qian The triples distance for rooted bifurcating phylogenetic trees Systematic Biology 45 3 1996 323 334
    • (1996) Systematic Biology , vol.45 , Issue.3 , pp. 323-334
    • Critchlow, D.E.1    Pearl, D.K.2    Qian, C.3
  • 19
    • 84962997608 scopus 로고
    • Analysis of quartet dissimilarity measures between undirected phylogenetic trees
    • W.H.E. Day Analysis of quartet dissimilarity measures between undirected phylogenetic trees Systematic Zoology 35 3 1986 325 333
    • (1986) Systematic Zoology , vol.35 , Issue.3 , pp. 325-333
    • Day, W.H.E.1
  • 21
    • 8444222732 scopus 로고    scopus 로고
    • Prospects for building the tree of life from large sequence databases
    • DOI 10.1126/science.1102036
    • A.C. Driskell, C. Ané, J.G. Burleigh, M.M. McMahon, B.C. O'Meara, and M.J. Sanderson Prospects for building the tree of life from large sequence databases Science 306 5699 2004 1172 1174 (Pubitemid 39488993)
    • (2004) Science , vol.306 , Issue.5699 , pp. 1172-1174
    • Driskell, A.C.1    Ane, C.2    Burleig, J.G.3    McMahon, M.M.4    O'Meara, B.C.5    Sanderson, M.J.6
  • 25
    • 0041563636 scopus 로고
    • Optimal evolutionary tree comparison by sparse dynamic programming
    • Piscataway, NJ IEEE Computer Society Press
    • M. Farach, and M. Thorup Optimal evolutionary tree comparison by sparse dynamic programming Proc. 35th Annual Symposium on Foundations of Computer Science Piscataway, NJ 1994 IEEE Computer Society Press 770 779
    • (1994) Proc. 35th Annual Symposium on Foundations of Computer Science , pp. 770-779
    • Farach, M.1    Thorup, M.2
  • 29
    • 0032315457 scopus 로고    scopus 로고
    • Computing the local consensus of trees
    • PII S0097539795287642
    • S. Kannan, T. Warnow, and S. Yooseph Computing the local consensus of trees SIAM Journal of Computing 27 6 1998 1695 1724 (Pubitemid 128691188)
    • (1998) SIAM Journal on Computing , vol.27 , Issue.6 , pp. 1695-1724
    • Kannan, S.1    Warnow, T.2    Yooseph, S.3
  • 30
    • 0347752674 scopus 로고    scopus 로고
    • An even Faster and More Unifying Algorithm for Comparing Trees via Unbalanced Bipartite Matchings
    • DOI 10.1006/jagm.2001.1163
    • M.-Y. Kao, T.-W. Lam, W.-K. Sung, and H.-F. Ting An even faster and more unifying algorithm for comparing trees via unbalanced bipartite matchings Journal of Algorithms 40 2 2001 212 233 (Pubitemid 33667212)
    • (2001) Journal of Algorithms , vol.40 , Issue.2 , pp. 212-233
    • Kao, M.-Y.1    Lam, T.-W.2    Sung, W.-K.3    Ting, H.-F.4
  • 31
    • 0001450923 scopus 로고
    • Mathematics without numbers
    • J.G. Kemeny Mathematics without numbers Daedalus 88 1959 577 591
    • (1959) Daedalus , vol.88 , pp. 577-591
    • Kemeny, J.G.1
  • 32
    • 18444374444 scopus 로고    scopus 로고
    • An improved algorithm for the maximum agreement subtree problem
    • DOI 10.1016/j.ipl.2005.02.005, PII S0020019005000499
    • C.-M. Lee, L.-J. Hung, M.-S. Chang, C.-B. Shen, and C.-Y. Tang An improved algorithm for the maximum agreement subtree problem Information Processing Letters 94 5 2005 211 216 (Pubitemid 40643286)
    • (2005) Information Processing Letters , vol.94 , Issue.5 , pp. 211-216
    • Lee, C.-M.1    Hung, L.-J.2    Chang, M.-S.3    Shen, C.-B.4    Tang, C.-Y.5
  • 33
    • 0024940670 scopus 로고
    • Reconstructing character evolution on polytomous cladograms
    • W.P. Maddison Reconstructing character evolution on polytomous cladograms Cladistics 5 1989 365 377
    • (1989) Cladistics , vol.5 , pp. 365-377
    • Maddison, W.P.1
  • 34
    • 0006671093 scopus 로고
    • A view of some consensus methods for trees
    • J. Felsenstein, Springer-Verlag
    • F.R. McMorris, D.B. Meronk, and D.A. Neumann A view of some consensus methods for trees J. Felsenstein, Numerical Taxonomy 1983 Springer-Verlag 122 125
    • (1983) Numerical Taxonomy , pp. 122-125
    • McMorris, F.R.1    Meronk, D.B.2    Neumann, D.A.3
  • 37
    • 77954209722 scopus 로고    scopus 로고
    • Supertriplets: A triplet-based supertree approach to phylogenomics
    • ISMB 2010
    • V. Ranwez, A. Criscuolo, and E.J. Douzery Supertriplets: a triplet-based supertree approach to phylogenomics Bioinfomatics 26 ISMB 2010 2010 i115 i123
    • (2010) Bioinfomatics , vol.26
    • Ranwez, V.1    Criscuolo, A.2    Douzery, E.J.3
  • 38
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • DOI 10.1016/0025-5564(81)90043-2
    • D.F. Robinson, and L.R. Foulds Comparison of phylogenetic trees Mathematical Biosciences 53 1981 131 147 (Pubitemid 11129084)
    • (1981) Mathematical Biosciences , vol.53 , Issue.1-2 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 39
    • 80053039877 scopus 로고    scopus 로고
    • Ph.D. thesis, University of Montpellier II, Montpellier, France, December 2009
    • C. Scornavacca, Supertree methods for phylogenomics, Ph.D. thesis, University of Montpellier II, Montpellier, France, December 2009.
    • Supertree Methods for Phylogenomics
    • Scornavacca, C.1
  • 40
  • 41
    • 0042601470 scopus 로고    scopus 로고
    • Oxford Lecture Series in Mathematics Oxford University Press Oxford
    • C. Semple, and M. Steel Phylogenetics Oxford Lecture Series in Mathematics 2003 Oxford University Press Oxford
    • (2003) Phylogenetics
    • Semple, C.1    Steel, M.2
  • 44
    • 12044252586 scopus 로고
    • Distributions of tree comparison metrics some new results
    • M. Steel, and D. Penny Distributions of tree comparison metrics some new results Systematic Biology 42 2 1993 126 141
    • (1993) Systematic Biology , vol.42 , Issue.2 , pp. 126-141
    • Steel, M.1    Penny, D.2
  • 46
    • 80053990757 scopus 로고    scopus 로고
    • Computing the quartet distance between evolutionary trees of bounded degree
    • D. Sankoff, L. Wang, F. Chin, Advances in Bioinformatics and Computational Biology Imperial College Press
    • M. Stissing, C.N.S. Pedersen, T. Mailund, G.S. Brodal, and R. Fagerberg Computing the quartet distance between evolutionary trees of bounded degree D. Sankoff, L. Wang, F. Chin, APBC Advances in Bioinformatics and Computational Biology vol.~5 2007 Imperial College Press 101 110
    • (2007) APBC , vol.5 , pp. 101-110
    • Stissing, M.1    Pedersen, C.N.S.2    Mailund, T.3    Brodal, G.S.4    Fagerberg, R.5
  • 47
    • 11244353178 scopus 로고    scopus 로고
    • Statistically based postprocessing of phylogenetic analysis by clustering
    • C. Stockham, L.-S. Wang, T. Warnow, Statistically based postprocessing of phylogenetic analysis by clustering, in: ISMB, 2002, pp. 285293.
    • (2002) ISMB , pp. 285-293
    • Stockham, C.1    Wang, L.-S.2    Warnow, T.3
  • 50
    • 0030038509 scopus 로고    scopus 로고
    • Majority-rule reduced consensus trees and their use in bootstrapping
    • M. Wilkinson Majority-rule reduced consensus trees and their use in bootstrapping Molecular Biology and Evolution 13 3 1996 437 444 (Pubitemid 26066095)
    • (1996) Molecular Biology and Evolution , vol.13 , Issue.3 , pp. 437-444
    • Wilkinson, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.